Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E8i	31020	2024-02-16	2021-03-01	3.1	3.57	—	3.5	0.005	0.74	0.0	0.05	24.65	0.00	2.216	7.94	0.00	3.3	96.7	0.0	-2.84	0.74	0.78	2.22	3.5	0.004	0.59	0.0	0.04	26.47	0.00	2.215	9.25	2.10	3.8	96.2	0.0	0.75	0.51	0.74	0.80	1.92	15271	1176	12	290	0	0	0	logfile
✔	7LWJ	23547	2024-02-19	2021-03-01	3.24	3.45	—	3.3	0.014	1.83	2.0	0.10	13.35	0.01	2.482	0.34	0.84	7.0	92.8	0.2	-1.78	0.70	0.68	1.83	3.3	0.003	0.64	0.0	0.04	14.71	0.00	2.145	9.87	1.80	3.7	96.3	0.0	-0.60	0.72	0.72	0.72	1.26	23840	3003	6	0	30	0	0	logfile
✔	7LWS	23555	2024-02-19	2021-03-01	3.22	3.43	—	3.4	0.014	1.80	4.0	0.11	12.96	0.01	2.517	0.10	0.95	4.7	95.0	0.3	-1.08	0.74	0.82	3.71	3.4	0.003	0.60	0.0	0.04	14.18	0.00	2.222	5.10	1.34	3.2	96.8	0.1	0.61	0.66	0.74	0.84	2.96	24320	3000	24	0	63	0	0	logfile
✔	7E8H	31019	2024-02-24	2021-03-01	4.5	4.06	4.44	3.7	0.002	0.62	0.0	0.04	14.21	0.00	2.089	18.26	0.00	6.9	93.0	0.1	-0.78	0.73	0.62	—	3.7	0.003	0.65	0.0	0.04	14.28	0.00	2.118	20.71	0.00	8.1	91.9	0.0	-1.10	0.43	0.78	0.73	—	44894	5576	12	0	0	0	0	logfile
✔	7LWM	23550	2024-02-19	2021-03-01	2.83	3.01	—	3.0	0.013	1.78	4.0	0.09	12.75	0.01	2.518	0.13	0.59	5.3	94.4	0.4	-0.71	0.72	0.84	4.08	3.0	0.003	0.60	0.0	0.04	14.61	0.00	2.183	4.71	1.42	3.4	96.6	0.1	0.53	0.62	0.72	0.85	3.35	23571	2980	9	0	37	0	0	logfile
✔	7LWW	23559	2024-02-19	2021-03-01	3.0	3.20	—	3.2	0.014	1.78	5.0	0.10	12.61	0.01	2.511	0.09	0.55	5.3	94.4	0.3	-0.82	0.75	0.84	3.87	3.2	0.006	0.67	0.0	0.05	14.54	0.00	2.128	5.91	1.65	3.3	96.7	0.0	0.42	1.24	0.79	0.87	3.12	23786	2982	18	0	50	0	0	logfile
✔	7LWV	23558	2024-02-19	2021-03-01	3.12	3.33	—	3.3	0.013	1.78	4.0	0.10	12.53	0.01	2.510	0.06	0.63	4.8	94.9	0.3	-0.77	0.76	0.84	3.95	3.3	0.004	0.62	0.0	0.05	14.32	0.00	2.117	4.48	1.45	3.2	96.8	0.0	0.43	1.23	0.77	0.86	3.19	23561	2980	6	0	34	0	0	logfile
✔	7E89	31012	2024-02-19	2021-03-01	4.0	3.26	3.98	3.2	0.003	0.63	0.0	0.04	14.52	0.00	2.182	19.49	0.04	10.2	89.8	0.0	-2.11	0.70	0.66	—	3.2	0.003	0.66	0.0	0.04	16.70	0.00	2.172	18.89	2.35	10.0	90.0	0.0	-2.29	0.65	0.70	0.66	—	23528	2916	4	0	0	0	0	logfile
✔	7LWU	23557	2024-02-19	2021-03-01	3.22	3.45	—	3.4	0.013	1.77	3.0	0.10	12.68	0.01	2.528	0.13	0.94	5.5	94.3	0.2	-0.75	0.74	0.83	3.14	3.4	0.003	0.59	0.0	0.04	13.95	0.00	2.188	4.45	1.89	3.2	96.8	0.0	0.65	1.22	0.75	0.86	2.89	23576	2980	6	0	35	0	0	logfile
✔	7LWi	23546	2024-02-19	2021-03-01	3.07	3.28	—	3.2	0.013	1.78	1.0	0.10	13.05	0.01	2.478	0.08	1.07	5.3	94.4	0.2	-1.20	0.73	0.79	3.51	3.2	0.004	0.64	0.0	0.04	14.56	0.00	2.133	6.77	1.83	4.0	96.0	0.0	0.07	0.67	0.73	0.81	2.56	23847	3003	6	0	30	0	0	logfile
✔	7LWP	23553	2024-02-19	2021-03-01	3.01	3.22	—	3.2	0.013	1.80	8.0	0.10	13.46	0.01	2.498	0.06	1.14	5.6	93.9	0.5	-1.08	0.74	0.81	3.01	3.2	0.003	0.58	0.0	0.04	14.35	0.00	2.177	4.92	1.30	3.6	96.4	0.0	0.53	1.24	0.76	0.84	2.69	23499	2982	6	0	31	0	0	logfile
✔	7LWT	23556	2024-02-19	2021-03-01	3.19	3.41	—	3.4	0.014	1.78	1.0	0.10	12.48	0.01	2.527	0.11	0.90	5.1	94.6	0.3	-0.82	0.76	0.84	3.87	3.4	0.004	0.62	0.0	0.04	14.03	0.00	2.159	4.44	1.77	3.4	96.5	0.1	0.60	1.23	0.77	0.84	3.17	23759	2980	15	0	48	0	0	logfile
✔	7LWN	23551	2024-02-19	2021-03-01	2.94	3.14	—	3.1	0.013	1.77	4.0	0.09	12.61	0.01	2.516	0.15	0.87	4.6	95.1	0.3	-0.76	0.74	0.83	3.80	3.1	0.006	0.68	0.0	0.05	14.79	0.00	2.147	5.77	1.73	3.2	96.8	0.0	0.07	0.60	0.76	0.83	3.13	23570	2980	11	0	37	0	0	logfile
✔	7E8G	31018	2024-02-19	2021-03-01	4.5	3.95	4.35	3.7	0.003	0.59	0.0	0.04	13.53	0.00	2.124	16.97	0.08	8.2	91.7	0.1	-1.30	0.79	0.72	—	3.7	0.002	0.59	0.0	0.04	13.82	0.00	2.144	12.36	0.00	8.5	91.4	0.1	-1.34	1.76	0.79	0.70	—	23528	2916	4	0	0	0	0	logfile
✔	7E87	31011	2024-02-15	2021-03-01	3.4	2.60	3.28	3.4	0.003	0.65	0.0	0.04	13.86	0.00	2.111	13.52	0.00	7.0	93.0	0.0	-0.03	0.60	0.77	1.57	3.4	0.003	0.67	0.0	0.04	16.44	0.00	2.166	13.70	3.00	6.7	93.3	0.0	0.41	1.17	0.60	0.79	1.25	13304	1664	8	0	0	0	0	logfile
✔	7LWL	23549	2024-02-19	2021-03-01	2.84	3.04	—	3.0	0.013	1.79	2.0	0.10	12.81	0.01	2.505	0.04	0.53	4.2	95.6	0.2	-0.78	0.72	0.83	4.07	3.0	0.003	0.61	0.0	0.05	14.73	0.00	2.158	5.22	1.22	3.0	97.0	0.0	0.55	0.61	0.73	0.84	3.27	23847	3003	6	0	30	0	0	logfile
✔	7E8C	31014	2024-02-24	2021-03-01	3.16	2.56	3.11	2.5	0.006	0.98	3.0	0.06	16.36	0.01	1.508	13.70	9.23	7.7	92.0	0.3	-1.93	0.71	0.70	2.21	2.4	0.004	0.67	0.0	0.04	15.87	0.00	2.115	12.50	2.95	6.6	93.3	0.1	-0.85	0.67	0.74	0.76	2.31	40225	5218	21	0	0	0	0	logfile
✔	7E8B	31013	2024-02-23	2021-03-01	4.2	3.74	4.28	3.8	0.003	0.61	0.0	0.04	14.23	0.00	2.120	15.19	0.05	7.3	92.7	0.0	-1.09	0.67	0.65	—	3.6	0.004	0.68	0.0	0.05	14.47	0.00	2.126	18.76	0.00	9.0	91.0	0.0	-1.20	0.55	0.67	0.67	—	36832	4580	8	0	0	0	0	logfile
✔	7E8D	31015	2024-02-16	2021-03-01	2.8	3.12	—	3.0	0.011	0.73	0.0	0.05	28.75	0.00	2.070	7.62	1.95	5.1	94.8	0.1	-0.71	0.83	0.87	3.74	2.9	0.004	0.63	0.0	0.04	28.87	0.00	2.111	8.48	1.58	4.6	95.4	0.0	0.91	0.28	0.85	0.90	3.19	14852	983	11	344	4	0	0	logfile
✔	7LWo	23552	2024-02-19	2021-03-01	2.85	3.02	—	3.0	0.013	1.79	6.0	0.09	12.48	0.01	2.511	0.09	0.59	4.5	95.1	0.3	-0.78	0.72	0.80	3.55	3.0	0.003	0.60	0.0	0.04	14.75	0.00	2.108	4.52	1.61	2.4	97.4	0.1	0.56	0.60	0.69	0.83	3.23	23556	2980	9	0	36	0	0	logfile

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