Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LWQ	23554	2024-02-17	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	3.0	0.10	13.59	0.01	2.519	0.05	1.18	6.6	93.1	0.4	-1.34	0.77	0.79	2.74	3.6	0.006	0.70	0.0	0.05	14.80	0.00	2.097	8.60	1.85	5.1	94.9	0.0	-0.24	1.25	0.78	0.82	2.16	19273	2425	7	0	29	0	0	logfile
✔	7LWo	23552	2024-02-19	2021-03-01	2.85	3.02	—	3.0	0.013	1.79	6.0	0.09	12.48	0.01	2.511	0.09	0.59	4.5	95.1	0.3	-0.78	0.72	0.80	3.55	3.0	0.003	0.60	0.0	0.04	14.75	0.00	2.108	4.52	1.61	2.4	97.4	0.1	0.56	0.60	0.69	0.83	3.23	23556	2980	9	0	36	0	0	logfile
✔	7LWL	23549	2024-02-19	2021-03-01	2.84	3.04	—	3.0	0.013	1.79	2.0	0.10	12.81	0.01	2.505	0.04	0.53	4.2	95.6	0.2	-0.78	0.72	0.83	4.07	3.0	0.003	0.61	0.0	0.05	14.73	0.00	2.158	5.22	1.22	3.0	97.0	0.0	0.55	0.61	0.73	0.84	3.27	23847	3003	6	0	30	0	0	logfile
✔	7E8F	31017	2024-02-14	2021-03-01	3.18	2.62	2.95	2.6	0.005	0.68	0.0	0.05	13.86	0.01	2.157	8.95	0.00	7.6	92.4	0.0	-1.64	0.68	0.81	4.24	2.6	0.004	0.64	0.0	0.04	15.23	0.00	2.155	9.01	2.51	6.7	93.3	0.0	-0.96	1.10	0.66	0.81	3.89	8768	1134	8	0	0	0	0	logfile
✔	7E82	31008	2024-02-22	2021-02-28	3.3	3.67	—	3.7	0.003	0.48	3.0	0.04	10.35	0.00	2.059	8.70	1.92	4.2	95.8	0.0	0.97	0.65	0.83	1.86	3.7	0.003	0.59	0.0	0.04	15.16	0.00	2.004	10.26	3.45	3.5	96.5	0.0	1.12	1.45	0.64	0.85	1.75	101606	13625	67	0	75	0	0	logfile
✔	7NPT	12520	2024-02-14	2021-02-28	3.27	3.21	3.16	3.2	0.007	1.19	0.0	0.05	14.11	0.01	2.338	2.91	0.00	1.8	98.2	0.0	-1.66	0.55	0.72	3.44	3.2	0.003	0.59	0.0	0.04	15.78	0.00	1.998	6.51	1.08	2.8	97.2	0.0	0.55	1.47	0.57	0.76	2.08	8609	552	3	0	0	0	4288	logfile
✔	7NPW	12524	2024-02-14	2021-02-28	3.99	4.53	—	4.3	0.003	0.67	0.0	0.04	13.77	0.00	2.290	12.91	0.00	3.3	96.7	0.0	0.92	0.52	0.76	1.58	4.3	0.003	0.76	0.0	0.04	16.39	0.00	2.233	16.72	3.60	4.2	95.8	0.0	0.69	0.61	0.56	0.82	1.37	9723	1278	3	0	0	0	0	logfile
✔	7E81	31007	2024-02-13	2021-02-28	4.5	6.05	—	4.7	0.007	0.83	12.0	0.05	13.14	0.00	2.027	10.57	2.21	6.7	92.7	0.6	-3.63	0.65	0.66	—	4.6	0.004	0.73	0.0	0.04	12.93	0.00	2.065	23.60	0.00	3.0	97.0	0.0	-0.41	1.87	0.71	0.85	—	57178	7397	68	0	154	0	0	logfile
✔	7E80	31006	2024-02-14	2021-02-28	3.67	4.02	—	3.9	0.003	0.50	4.0	0.04	10.46	0.00	2.066	8.31	1.97	4.4	95.6	0.0	0.97	0.74	0.84	1.76	3.9	0.003	0.63	2.0	0.04	13.44	0.00	1.991	11.31	2.81	4.2	95.8	0.0	0.95	0.42	0.74	0.84	1.66	114468	15296	77	0	75	0	0	logfile
✔	7NPS	12518	2024-02-13	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.002	0.58	0.0	0.05	12.87	0.00	1.954	3.00	0.60	2.1	97.9	0.0	0.01	0.68	0.83	0.83	2.23	55350	3732	9	0	0	0	27681	logfile
✔	7E7Z	31005	2024-02-13	2021-02-28	3.2	3.35	2.96	3.4	0.002	0.51	0.0	0.04	13.40	0.00	2.240	9.87	0.00	5.6	94.4	0.0	-0.12	0.63	0.81	1.86	3.4	0.003	0.53	0.0	0.04	15.26	0.00	2.272	8.22	2.82	5.8	94.2	0.0	1.62	0.42	0.55	0.80	1.80	7808	992	4	0	0	0	0	logfile
✔	7NPU	12521	2024-02-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.58	0.0	0.04	12.52	0.00	1.928	8.00	0.00	2.7	97.3	0.0	1.77	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	7E83	31009	2024-02-15	2021-02-28	3.1	3.20	2.96	3.3	0.003	0.61	0.0	0.04	15.41	0.00	2.153	7.05	0.00	9.0	90.7	0.3	-0.08	0.71	0.80	3.01	3.2	0.003	0.61	0.0	0.04	17.08	0.00	2.188	8.18	0.96	8.1	91.6	0.3	0.25	0.48	0.69	0.82	2.72	12704	1544	8	0	0	0	0	logfile
✔	7E84	31010	2024-02-18	2021-02-28	3.1	3.20	3.04	3.3	0.002	0.53	0.0	0.04	14.85	0.00	2.263	6.57	0.00	7.0	92.8	0.2	-0.03	0.62	0.67	3.16	3.2	0.004	0.61	0.0	0.04	16.50	0.00	2.206	9.34	1.58	7.5	92.4	0.2	0.61	0.49	0.67	0.76	2.52	20580	2548	8	0	0	0	0	logfile
✔	7LW1	23544	2024-02-24	2021-02-27	2.9	2.87	—	2.9	0.014	2.11	8.0	0.12	16.96	0.02	1.890	2.59	1.00	4.4	95.4	0.1	-1.68	0.60	0.76	3.82	2.9	0.005	0.72	0.0	0.11	16.96	0.00	1.880	8.08	2.47	3.7	96.3	0.0	0.38	1.26	0.59	0.79	2.88	45792	2976	8	0	16	0	22704	logfile
✔	7E7S	31003	2024-02-13	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.4	0.002	0.54	0.0	0.04	15.94	0.00	2.211	8.64	1.26	3.2	96.8	0.0	1.44	1.28	0.65	0.82	0.60	7884	1020	1	0	2	0	0	logfile
✔	7LVT	23542	2024-02-17	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.72	0.0	0.04	13.01	0.00	2.198	12.57	0.00	5.5	94.3	0.1	0.26	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	7LVV	23543	2024-02-18	2021-02-26	3.25	4.06	—	3.8	0.013	1.80	32.0	0.12	23.62	0.01	1.705	20.26	13.97	10.3	88.4	1.3	-4.96	0.83	0.74	1.48	3.7	0.003	0.68	0.0	0.04	21.49	0.00	2.141	10.65	2.14	3.6	96.3	0.0	-0.59	1.04	0.84	0.81	1.75	21020	2312	12	110	6	0	0	logfile
✔	7E7i	31000	2024-02-16	2021-02-26	3.3	3.44	—	3.4	0.011	1.16	1.0	0.06	18.45	0.01	1.593	13.82	1.82	15.3	84.0	0.8	-4.06	0.71	0.84	3.18	3.4	0.003	0.72	0.0	0.04	16.70	0.00	2.152	7.07	2.77	10.8	89.1	0.1	-1.77	0.43	0.71	0.84	1.86	15724	2011	4	0	19	0	0	logfile
✔	7NPF	12515	2024-02-20	2021-02-26	4.5	4.54	—	4.5	0.004	0.92	0.0	0.05	19.23	0.01	1.998	18.50	0.47	8.9	91.0	0.1	-3.00	0.42	0.61	—	4.5	0.004	0.86	0.0	0.05	18.16	0.01	1.855	22.87	0.12	6.6	93.4	0.0	-1.25	1.71	0.44	0.65	—	26773	3224	18	98	16	0	0	logfile

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