Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LVT	23542	2024-02-17	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.72	0.0	0.04	13.01	0.00	2.198	12.57	0.00	5.5	94.3	0.1	0.26	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	7LVK	23539	2024-02-29	2021-02-25	2.2	2.31	—	2.4	0.009	0.92	8.0	0.06	23.29	0.02	1.324	2.41	0.81	5.1	94.8	0.2	-2.34	0.64	0.86	5.37	2.4	0.004	0.67	0.0	0.04	23.38	0.01	1.013	5.67	2.42	4.7	95.2	0.1	-0.30	0.96	0.67	0.89	5.14	151436	3222	63	3016	181	2716	58704	logfile
✔	7NNP	12482	2024-02-15	2021-02-25	3.2	2.99	3.18	3.2	0.006	0.96	0.0	0.05	16.85	0.01	2.223	5.43	0.00	3.5	96.5	0.0	-0.72	0.67	0.82	2.17	3.2	0.002	0.55	0.0	0.04	16.18	0.00	2.179	9.41	1.75	2.9	97.1	0.0	0.88	0.31	0.69	0.85	1.88	11096	1456	6	0	11	0	0	logfile
✔	7E7D	30999	2024-02-20	2021-02-25	3.2	3.39	—	3.3	0.009	1.02	1.0	0.09	14.43	0.01	2.140	6.77	3.69	2.8	97.2	0.0	-1.75	0.82	0.84	3.05	3.3	0.003	0.57	0.0	0.04	14.48	0.00	2.162	6.06	1.88	3.3	96.7	0.0	0.24	0.53	0.82	0.86	2.71	26509	3240	38	0	86	0	0	logfile
✔	7NNT	12483	2024-02-13	2021-02-25	3.4	3.53	3.51	3.5	0.005	0.66	0.0	0.05	13.72	0.00	2.218	6.31	0.00	2.2	97.8	0.0	-0.55	0.67	0.82	2.48	3.5	0.005	0.59	0.0	0.04	15.56	0.00	2.214	8.57	2.05	3.2	96.8	0.0	0.24	0.29	0.68	0.84	1.99	7666	979	4	0	0	0	0	logfile
✔	7NNU	12484	2024-02-13	2021-02-25	2.7	2.67	2.73	2.8	0.007	0.79	0.0	0.05	14.02	0.01	2.251	4.56	0.00	2.1	97.9	0.0	-0.65	0.68	0.87	3.53	2.7	0.007	0.67	0.0	0.05	16.37	0.01	2.155	9.31	2.04	2.3	97.7	0.0	1.31	0.84	0.69	0.89	3.16	7724	982	8	0	0	35	0	logfile
✔	7E7B	30998	2024-02-20	2021-02-25	2.6	2.79	—	2.7	0.011	0.95	3.0	0.07	14.73	0.02	2.198	4.93	5.49	3.6	96.4	0.0	-2.02	0.83	0.87	4.58	2.7	0.002	0.55	0.0	0.04	14.46	0.00	2.102	4.53	1.46	2.6	97.4	0.0	-0.23	0.43	0.82	0.88	4.22	27363	3306	48	0	99	36	0	logfile
✔	7NNH	12477	2024-02-13	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.003	0.97	0.0	0.05	17.08	0.00	2.079	25.51	2.89	20.5	79.4	0.2	-2.40	1.11	0.74	0.79	—	5299	637	1	0	0	0	0	logfile
✔	7LV8	23529	2024-02-15	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.12	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.004	0.59	0.0	0.03	27.54	0.00	2.232	9.32	1.50	1.7	98.3	0.0	2.06	0.58	0.70	0.79	1.09	10651	764	10	242	0	0	0	logfile
✔	7LV9	23530	2024-02-14	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.07	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.003	0.63	0.0	0.03	28.57	0.00	2.194	16.76	0.00	2.5	97.5	0.0	1.84	1.51	0.90	0.84	—	8238	581	8	190	0	0	0	logfile
✔	7E6T	30996	2024-02-15	2021-02-24	3.0	3.54	—	3.5	0.003	0.55	0.0	0.04	14.78	0.00	1.853	4.71	0.36	2.0	98.0	0.0	0.77	0.64	0.75	1.72	3.5	0.003	0.56	0.0	0.04	15.25	0.00	2.177	4.79	1.45	3.4	96.6	0.0	-0.38	1.22	0.67	0.82	2.56	12741	1591	4	0	12	0	0	logfile
✔	7LV0	23528	2024-02-25	2021-02-23	3.2	3.59	—	3.2	0.012	1.25	0.0	0.10	23.31	0.02	1.414	29.31	3.83	19.0	79.0	2.0	-4.79	0.81	0.82	1.87	3.2	0.005	0.75	0.0	0.04	23.60	0.01	2.022	18.34	7.76	14.6	85.3	0.1	-2.80	0.48	0.81	0.84	1.23	147330	5851	60	4734	0	0	0	logfile
✔	7LUV	23527	2024-02-17	2021-02-23	3.7	4.02	—	3.6	0.007	0.80	0.0	0.05	9.84	0.00	2.050	10.92	0.05	9.6	90.1	0.3	-4.47	0.76	0.79	2.90	3.6	0.003	0.63	0.0	0.04	13.45	0.00	2.201	7.77	1.35	6.0	94.0	0.0	0.34	0.89	0.77	0.83	2.03	18773	2168	6	0	210	0	0	logfile
✔	7NMN	12466	2024-02-16	2021-02-23	3.6	3.69	—	3.7	0.010	1.16	4.0	0.08	14.03	0.01	2.361	15.56	0.88	6.0	94.0	0.0	-1.43	0.67	0.83	2.39	3.6	0.003	0.56	0.0	0.04	16.58	0.00	2.242	8.90	2.65	3.5	96.5	0.0	1.89	0.62	0.66	0.83	1.36	15436	1876	4	0	0	0	0	logfile
✔	7LUC	23520	2024-02-21	2021-02-22	3.21	2.30	3.37	2.1	0.004	0.73	0.0	0.05	15.74	0.01	1.937	16.21	3.51	3.5	96.5	0.0	-1.82	0.66	0.61	1.85	2.1	0.003	0.67	0.0	0.04	16.80	0.00	2.067	14.70	4.42	4.9	95.1	0.0	-0.09	0.48	0.71	0.70	1.46	21288	2754	15	0	0	0	0	logfile
✔	7LUE	23521	2024-02-16	2021-02-22	2.9	3.08	—	3.1	0.003	0.49	0.0	0.04	10.43	0.00	2.200	5.63	0.86	1.7	98.3	0.0	0.33	0.73	0.82	3.96	3.0	0.005	0.59	0.0	0.05	15.31	0.00	2.196	9.30	4.32	2.6	97.4	0.0	0.02	0.43	0.72	0.83	3.58	15018	1947	9	0	0	0	0	logfile
✔	7NL9	12461	2024-02-17	2021-02-22	2.86	2.98	—	3.0	0.003	0.47	0.0	0.04	13.12	0.00	2.173	6.61	0.00	2.5	97.5	0.0	1.60	0.68	0.86	2.20	3.0	0.004	0.52	0.0	0.04	15.60	0.00	1.933	6.61	1.23	2.0	98.0	0.0	3.45	0.41	0.68	0.88	2.43	18756	1269	15	0	0	0	9500	logfile
✔	7NLL	12465	2024-02-13	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	15.47	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.004	0.64	0.0	0.04	14.76	0.00	2.202	7.43	5.94	2.8	97.1	0.2	-0.30	1.57	0.82	0.87	3.49	5056	656	6	0	2	0	0	logfile
✔	7LUA	23519	2024-02-24	2021-02-21	4.7	5.59	4.78	4.1	0.015	1.97	9.0	0.12	20.57	0.02	2.541	0.91	2.85	9.1	89.8	1.1	-2.53	0.78	0.67	—	3.8	0.004	0.71	0.0	0.04	12.37	0.00	1.913	17.31	0.17	11.2	88.7	0.1	-2.48	0.66	0.87	0.81	—	42495	2650	56	0	139	0	20105	logfile
✔	7E5Z	30995	2024-02-17	2021-02-21	3.6	3.29	3.74	3.5	0.005	0.91	1.0	0.05	15.30	0.01	1.908	21.03	0.57	10.2	89.7	0.1	-6.25	0.83	0.78	1.73	3.5	0.003	0.62	0.0	0.04	15.96	0.00	2.011	14.58	1.43	10.1	89.8	0.1	-2.47	1.39	0.83	0.80	1.57	19054	1312	4	0	10	0	8810	logfile

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