Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E5R	30993	2024-02-24	2021-02-20	3.6	4.15	—	3.6	0.004	0.68	0.0	0.05	13.50	0.01	1.953	18.81	0.37	9.1	90.7	0.2	-4.12	0.78	0.67	1.38	3.6	0.004	0.65	0.0	0.04	15.07	0.00	2.081	14.40	2.10	8.3	91.7	0.0	-1.87	0.66	0.83	0.80	1.51	40683	5262	36	0	30	0	0	logfile
✔	7E5S	30994	2024-02-23	2021-02-20	3.6	4.22	—	3.6	0.012	1.41	23.0	0.10	10.85	0.01	1.513	21.26	1.35	4.5	95.2	0.3	0.70	0.65	0.46	0.87	3.5	0.004	0.67	0.0	0.04	13.34	0.00	2.140	14.70	1.76	4.8	95.1	0.1	-0.30	1.45	0.83	0.79	1.71	38916	5038	31	0	24	0	0	logfile
✔	7LTo	23517	2024-02-13	2021-02-19	3.2	3.37	—	3.3	0.003	0.71	0.0	0.05	15.41	0.00	2.232	11.24	3.25	9.1	90.9	0.0	-4.26	0.71	0.77	2.73	3.3	0.003	0.67	0.0	0.04	16.97	0.00	2.188	8.03	4.67	7.4	92.6	0.0	-0.52	1.16	0.70	0.79	2.12	4754	605	2	0	0	0	0	logfile
✔	7NL0	12453	2024-02-15	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.74	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.004	0.59	0.0	0.03	29.63	0.00	2.212	11.00	2.07	3.0	97.0	0.0	2.45	0.27	0.77	0.81	2.84	11363	755	10	262	0	0	0	logfile
✔	7NKU	12448	2024-02-19	2021-02-19	3.4	3.03	—	3.1	0.008	0.94	0.0	0.05	15.33	0.01	1.986	17.36	0.00	9.2	90.8	0.0	-0.63	0.74	0.77	1.90	3.1	0.003	0.74	0.0	0.04	17.72	0.01	1.273	14.44	3.63	7.0	93.0	0.0	0.24	0.64	0.73	0.79	1.25	25332	3252	12	0	18	0	0	logfile
✔	7NKY	12450	2024-02-25	2021-02-19	3.2	3.33	—	3.3	0.006	0.97	0.0	0.05	20.48	0.01	1.982	6.56	0.02	4.9	95.1	0.0	-0.29	0.81	0.73	1.11	3.3	0.004	0.64	0.0	0.04	21.11	0.00	2.006	14.01	2.17	4.0	96.0	0.0	0.51	0.52	0.83	0.79	1.40	51842	5734	34	302	10	0	0	logfile
✔	7NKX	12449	2024-02-25	2021-02-19	2.9	3.17	—	3.2	0.008	1.17	2.0	0.06	19.72	0.01	1.950	7.11	0.10	5.5	94.5	0.0	-0.66	0.83	0.76	1.50	3.1	0.008	0.81	0.0	0.05	21.26	0.01	1.265	18.98	2.99	5.3	94.7	0.0	-0.33	1.20	0.84	0.80	1.72	49720	5506	33	283	11	0	0	logfile
✔	7LT3	23510	2024-02-21	2021-02-18	4.6	3.52	—	4.3	0.012	1.33	34.0	0.08	16.23	0.01	2.017	25.52	1.63	10.7	89.2	0.1	-2.30	0.59	0.56	—	2.0	0.003	0.74	0.0	0.04	15.39	0.00	2.061	17.66	0.00	5.8	94.2	0.0	-0.41	1.37	0.60	0.65	—	93244	11261	22	122	42	0	0	logfile
✔	7NKK	12442	2024-02-16	2021-02-18	3.6	3.81	—	3.5	0.003	0.51	0.0	0.04	13.87	0.00	2.157	11.16	0.00	3.3	96.7	0.0	1.95	0.75	0.80	1.78	3.5	0.003	0.55	0.0	0.04	15.16	0.00	2.028	12.48	0.50	2.0	98.0	0.0	3.38	0.90	0.75	0.80	1.84	16671	1143	12	0	0	0	8376	logfile
✔	7NKi	12440	2024-02-20	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	14.26	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.004	0.69	0.0	0.04	14.72	0.01	1.866	21.82	0.00	6.4	93.6	0.0	-1.05	2.35	0.80	0.65	—	28775	1794	6	23	0	0	13868	logfile
✔	7NKJ	12441	2024-02-24	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	17.26	0.00	1.958	2.88	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.54	0.0	0.04	17.05	0.00	1.772	2.88	0.88	1.7	98.2	0.1	1.21	0.13	0.80	0.90	5.95	45605	2945	20	0	11	516	22478	logfile
✔	7LSS	23507	2024-02-18	2021-02-18	3.72	4.30	3.76	4.0	0.011	1.11	2.0	0.06	12.45	0.01	1.993	1.15	0.00	4.9	95.1	0.0	-0.63	0.76	0.78	3.19	4.0	0.005	0.66	0.0	0.05	13.01	0.00	2.153	6.71	1.33	4.4	95.6	0.0	0.42	1.56	0.78	0.83	2.27	20582	2783	14	0	42	0	0	logfile
✔	7NKH	12439	2024-02-24	2021-02-18	2.78	2.86	—	2.8	0.002	0.50	0.0	0.04	15.10	0.00	2.013	3.97	0.00	2.1	97.8	0.1	1.32	0.84	0.88	4.82	2.8	0.004	0.50	0.0	0.04	15.57	0.00	1.730	4.01	0.42	2.1	97.8	0.1	1.35	0.23	0.84	0.90	4.60	45277	2959	18	0	11	16	22565	logfile
✔	7NKQ	12446	2024-02-14	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.76	0.00	2.004	6.87	0.87	2.4	97.6	0.0	2.34	0.33	0.82	0.84	2.51	10621	714	8	0	0	0	5312	logfile
✔	7NKN	12444	2024-02-16	2021-02-18	2.71	2.61	—	2.8	0.003	0.47	0.0	0.04	13.52	0.00	2.078	5.11	0.00	2.6	97.4	0.0	1.75	0.69	0.86	3.48	2.8	0.004	0.53	0.0	0.04	14.92	0.00	2.076	5.70	0.62	1.8	98.2	0.0	3.60	0.90	0.70	0.88	2.84	16846	1156	12	0	0	0	8457	logfile
✔	7NKA	12435	2024-02-20	2021-02-17	4.07	4.20	—	4.1	0.004	0.67	0.0	0.04	14.26	0.00	1.908	8.61	0.00	4.0	96.0	0.0	-0.66	0.63	0.51	—	4.1	0.004	0.67	0.0	0.04	14.98	0.00	1.880	14.50	0.00	6.0	94.0	0.0	-0.48	1.92	0.74	0.70	—	28778	1796	6	23	0	0	13868	logfile
✔	7NJL	12382	2024-02-18	2021-02-17	2.71	2.49	—	2.2	0.003	0.51	0.0	0.04	15.07	0.00	2.057	6.48	0.00	2.4	97.6	0.0	1.54	0.85	0.86	3.77	2.2	0.003	0.53	0.0	0.04	16.31	0.00	1.746	6.94	0.75	2.7	97.3	0.0	1.54	0.33	0.86	0.88	3.71	74775	4944	31	0	11	16	37414	logfile
✔	7NJM	12387	2024-02-18	2021-02-17	2.84	2.63	—	2.7	0.003	0.50	0.0	0.04	15.19	0.00	1.935	6.68	0.00	2.7	97.3	0.0	1.41	0.85	0.86	3.49	2.7	0.003	0.51	0.0	0.04	16.47	0.00	1.733	6.58	0.81	2.6	97.4	0.0	1.45	0.89	0.86	0.88	3.33	74611	4932	31	0	11	16	37328	logfile
✔	7NJT	12422	2024-02-16	2021-02-17	2.75	2.94	—	2.8	0.003	0.48	0.0	0.04	13.47	0.00	2.239	6.01	0.00	2.7	97.3	0.0	2.22	0.66	0.87	2.39	2.8	0.004	0.53	0.0	0.04	15.38	0.00	2.124	5.40	1.16	1.7	98.3	0.0	3.86	0.39	0.66	0.89	1.96	16475	1122	12	0	0	0	8352	logfile
✔	7NJV	12424	2024-02-16	2021-02-17	2.9	2.81	—	2.9	0.003	0.60	0.0	0.04	13.58	0.00	2.179	6.55	0.00	2.5	97.5	0.0	2.26	0.65	0.88	2.67	2.9	0.004	0.52	0.0	0.04	15.57	0.00	2.141	6.31	1.68	1.5	98.5	0.0	4.13	0.36	0.65	0.90	2.23	16463	1118	13	0	1	0	8337	logfile

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