Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJS	12417	2024-02-18	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.98	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.98	0.00	1.662	4.71	1.30	2.6	97.4	0.0	1.76	0.23	0.86	0.90	4.21	74642	4932	31	0	11	16	37346	logfile
✔	7NJQ	12407	2024-02-18	2021-02-17	2.67	2.56	—	2.2	0.004	0.52	0.0	0.04	14.82	0.00	1.901	5.62	0.00	2.1	97.8	0.1	1.78	0.85	0.87	4.10	2.2	0.004	0.62	0.0	0.04	15.99	0.00	1.702	6.38	0.78	2.4	97.5	0.1	1.49	0.32	0.86	0.89	4.12	74669	4936	31	0	11	16	37357	logfile
✔	7NK1	12428	2024-02-20	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	14.32	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.004	0.67	0.0	0.04	14.72	0.00	1.873	21.16	0.00	6.0	94.0	0.0	-0.98	1.61	0.61	0.40	—	28747	1791	6	23	0	0	13868	logfile
✔	7NJN	12392	2024-02-18	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.88	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.005	0.54	0.0	0.04	16.07	0.00	1.670	6.96	0.68	2.4	97.5	0.1	1.45	0.89	0.86	0.89	3.88	74548	4927	31	0	11	16	37299	logfile
✔	7NK2	12429	2024-02-20	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	14.37	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.004	0.69	0.0	0.04	14.51	0.00	1.824	19.86	0.00	6.7	93.3	0.0	-1.01	4.60	0.73	0.67	—	28776	1794	6	23	0	0	13868	logfile
✔	7NJR	12412	2024-02-18	2021-02-17	2.56	2.54	—	2.4	0.004	0.52	0.0	0.04	14.80	0.00	1.940	5.25	0.00	3.0	96.9	0.1	1.36	0.85	0.87	4.22	2.4	0.004	0.51	0.0	0.04	15.82	0.00	1.713	5.36	0.62	2.9	97.1	0.1	1.67	0.88	0.86	0.89	4.03	74587	4930	31	0	11	16	37321	logfile
✔	7NJM	12387	2024-02-18	2021-02-17	2.84	2.63	—	2.7	0.003	0.50	0.0	0.04	15.19	0.00	1.935	6.68	0.00	2.7	97.3	0.0	1.41	0.85	0.86	3.49	2.7	0.003	0.51	0.0	0.04	16.47	0.00	1.733	6.58	0.81	2.6	97.4	0.0	1.45	0.89	0.86	0.88	3.33	74611	4932	31	0	11	16	37328	logfile
✔	7NJK	12377	2024-02-18	2021-02-17	2.52	2.49	—	2.2	0.004	0.51	0.0	0.04	14.88	0.00	2.061	4.73	0.00	2.4	97.6	0.1	1.64	0.85	0.87	4.35	2.2	0.003	0.50	0.0	0.04	15.86	0.00	1.779	5.39	0.31	2.3	97.6	0.0	1.79	1.68	0.86	0.89	4.09	74650	4934	31	0	11	16	37359	logfile
✔	7NKA	12435	2024-02-20	2021-02-17	4.07	4.20	—	4.1	0.004	0.67	0.0	0.04	14.26	0.00	1.908	8.61	0.00	4.0	96.0	0.0	-0.66	0.63	0.51	—	4.1	0.004	0.67	0.0	0.04	14.98	0.00	1.880	14.50	0.00	6.0	94.0	0.0	-0.48	1.92	0.74	0.70	—	28778	1796	6	23	0	0	13868	logfile
✔	7NKC	12437	2024-02-20	2021-02-17	4.46	4.76	—	4.6	0.004	0.72	0.0	0.04	14.45	0.01	1.795	9.79	0.25	4.3	95.7	0.1	-0.76	0.51	0.30	—	4.7	0.003	0.65	0.0	0.04	14.70	0.00	1.890	17.89	0.00	6.2	93.8	0.0	-0.76	1.91	0.63	0.51	—	28788	1795	6	23	0	0	13868	logfile
✔	7LS9	23506	2024-02-21	2021-02-17	3.42	3.90	3.53	3.8	0.005	0.89	9.0	0.06	12.84	0.01	2.232	4.37	0.00	3.0	97.0	0.0	-0.75	0.81	0.75	2.14	3.8	0.003	0.60	0.0	0.04	13.65	0.00	2.213	8.65	2.32	2.7	97.3	0.0	0.05	2.21	0.85	0.82	2.10	32226	4002	33	0	75	0	0	logfile
✔	7NJP	12402	2024-02-18	2021-02-17	2.84	2.89	—	2.7	0.003	0.50	0.0	0.04	14.73	0.00	2.035	6.55	0.00	2.3	97.7	0.0	1.92	0.86	0.86	3.44	2.7	0.003	0.51	0.0	0.04	15.65	0.00	1.793	6.78	0.36	2.4	97.5	0.0	1.83	0.91	0.86	0.88	3.31	74554	4929	31	0	11	16	37305	logfile
✔	7NJo	12397	2024-02-18	2021-02-17	2.92	2.77	—	2.7	0.004	0.53	0.0	0.04	15.21	0.00	2.080	8.25	0.00	2.9	97.1	0.0	1.46	0.85	0.85	3.17	2.6	0.004	0.56	0.0	0.04	16.59	0.00	1.710	9.06	0.91	2.7	97.3	0.0	1.58	0.35	0.86	0.87	3.11	74641	4934	31	0	11	16	37345	logfile
✔	7NJL	12382	2024-02-18	2021-02-17	2.71	2.49	—	2.2	0.003	0.51	0.0	0.04	15.07	0.00	2.057	6.48	0.00	2.4	97.6	0.0	1.54	0.85	0.86	3.77	2.2	0.003	0.53	0.0	0.04	16.31	0.00	1.746	6.94	0.75	2.7	97.3	0.0	1.54	0.33	0.86	0.88	3.71	74775	4944	31	0	11	16	37414	logfile
✔	7NKD	12438	2024-02-14	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.004	0.49	0.0	0.04	15.33	0.00	2.121	7.64	0.39	1.4	98.6	0.0	2.89	0.91	0.85	0.84	2.45	9555	643	8	0	0	0	4768	logfile
✔	7NJT	12422	2024-02-16	2021-02-17	2.75	2.94	—	2.8	0.003	0.48	0.0	0.04	13.47	0.00	2.239	6.01	0.00	2.7	97.3	0.0	2.22	0.66	0.87	2.39	2.8	0.004	0.53	0.0	0.04	15.38	0.00	2.124	5.40	1.16	1.7	98.3	0.0	3.86	0.39	0.66	0.89	1.96	16475	1122	12	0	0	0	8352	logfile
✔	7NJX	12426	2024-02-16	2021-02-17	4.32	4.37	—	4.1	0.003	0.52	0.0	0.04	14.39	0.00	2.028	13.09	0.00	5.8	94.2	0.0	1.56	0.60	0.76	—	4.2	0.003	0.55	0.0	0.04	14.38	0.00	1.946	13.70	0.00	3.2	96.8	0.0	3.70	0.47	0.60	0.76	—	16426	1118	12	0	0	0	8337	logfile
✔	7NJV	12424	2024-02-16	2021-02-17	2.9	2.81	—	2.9	0.003	0.60	0.0	0.04	13.58	0.00	2.179	6.55	0.00	2.5	97.5	0.0	2.26	0.65	0.88	2.67	2.9	0.004	0.52	0.0	0.04	15.57	0.00	2.141	6.31	1.68	1.5	98.5	0.0	4.13	0.36	0.65	0.90	2.23	16463	1118	13	0	1	0	8337	logfile
✔	7NJW	12425	2024-02-16	2021-02-17	3.67	3.61	—	3.8	0.003	0.50	0.0	0.04	14.13	0.00	2.178	7.79	0.00	3.2	96.8	0.0	2.21	0.62	0.82	1.69	3.8	0.003	0.52	0.0	0.04	15.48	0.00	2.146	8.52	0.78	2.3	97.7	0.0	4.19	0.40	0.62	0.82	1.89	16426	1118	12	0	0	0	8337	logfile
✔	7NJY	12427	2024-02-16	2021-02-17	2.94	2.86	—	2.9	0.003	0.47	0.0	0.04	13.38	0.00	2.202	4.99	0.00	2.8	97.2	0.0	2.11	0.64	0.87	2.98	3.0	0.004	0.54	0.0	0.04	15.71	0.00	2.117	5.24	0.78	1.9	98.1	0.0	4.16	0.40	0.64	0.89	2.52	16426	1118	12	0	0	0	8337	logfile

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