Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NKC	12437	2024-02-20	2021-02-17	4.46	4.76	—	4.6	0.004	0.72	0.0	0.04	14.45	0.01	1.795	9.79	0.25	4.3	95.7	0.1	-0.76	0.51	0.30	—	4.7	0.003	0.65	0.0	0.04	14.70	0.00	1.890	17.89	0.00	6.2	93.8	0.0	-0.76	1.91	0.63	0.51	—	28788	1795	6	23	0	0	13868	logfile
✔	7NKB	12436	2024-02-16	2021-02-17	2.9	3.02	—	2.9	0.004	0.50	0.0	0.04	13.12	0.00	2.057	6.86	0.00	2.0	98.0	0.0	1.81	0.73	0.86	2.90	2.9	0.005	0.56	0.0	0.04	15.04	0.00	2.059	7.63	1.63	1.6	98.4	0.0	3.36	0.38	0.74	0.88	2.76	16769	1150	12	0	0	0	8429	logfile
✔	7NJ7	12375	2024-02-20	2021-02-16	4.82	5.23	—	4.8	0.004	0.73	1.0	0.04	14.45	0.01	1.907	8.72	0.19	4.3	95.7	0.0	-0.72	0.74	0.46	—	4.9	0.002	0.60	0.0	0.04	14.23	0.00	1.874	16.32	0.00	4.0	96.0	0.0	-0.47	2.33	0.82	0.63	—	28818	1797	6	23	0	0	13868	logfile
✔	7NJ5	12373	2024-02-20	2021-02-16	4.63	4.97	—	4.6	0.004	0.73	1.0	0.05	14.35	0.01	1.907	8.73	0.32	4.3	95.7	0.0	-0.71	0.75	0.49	—	4.7	0.003	0.62	0.0	0.04	14.70	0.00	1.988	17.15	0.00	3.8	96.2	0.0	-0.57	2.35	0.83	0.67	—	28806	1800	6	23	0	0	13868	logfile
✔	7LRE	23496	2024-02-14	2021-02-16	2.76	3.85	2.75	3.2	0.003	0.44	0.0	0.04	7.41	0.00	2.301	3.48	0.22	1.6	98.4	0.0	2.20	0.80	0.83	4.37	3.2	0.002	0.48	0.0	0.04	9.63	0.00	2.317	4.15	0.44	1.8	98.0	0.2	2.43	1.10	0.82	0.89	3.56	8144	1004	4	0	2	0	0	logfile
✔	7LRD	23495	2024-02-16	2021-02-16	3.22	4.04	3.18	3.2	0.003	0.48	0.0	0.04	7.75	0.00	1.795	4.48	0.25	1.3	98.7	0.0	2.71	0.82	0.76	2.88	3.3	0.007	0.65	0.0	0.04	10.70	0.00	1.940	9.27	0.89	2.6	97.4	0.0	2.22	1.19	0.90	0.88	2.73	14346	1766	8	0	8	0	0	logfile
✔	7LRC	23494	2024-02-13	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	8.07	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.58	0.0	0.04	11.41	0.00	1.994	9.18	1.20	0.4	99.6	0.0	3.64	0.54	0.76	0.86	3.04	6202	762	6	0	6	0	0	logfile
✔	7E51	30989	2024-02-19	2021-02-16	3.23	3.40	—	3.4	0.005	0.69	0.0	0.05	14.04	0.00	2.055	9.93	0.00	6.1	93.7	0.2	-3.14	0.81	0.84	2.86	3.4	0.002	0.51	0.0	0.04	15.32	0.00	2.020	8.82	1.19	3.4	96.6	0.0	0.59	1.56	0.81	0.86	2.05	25032	3384	16	0	24	0	0	logfile
✔	7E4X	30988	2024-02-19	2021-02-15	3.08	3.19	—	3.1	0.006	0.61	3.0	0.05	13.52	0.00	2.196	9.87	0.00	6.9	92.9	0.2	-3.25	0.79	0.85	3.13	3.1	0.003	0.69	1.0	0.04	15.07	0.00	1.883	9.45	1.63	4.0	96.0	0.1	0.16	0.38	0.79	0.86	2.83	24936	3384	8	0	0	0	0	logfile
✔	7E4T	30987	2024-02-18	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	14.09	0.00	2.278	6.50	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.003	0.52	0.0	0.04	16.37	0.00	2.149	6.12	2.66	1.7	98.3	0.0	2.77	1.22	0.70	0.85	3.08	22276	2656	8	0	24	0	0	logfile
✔	7LQV	23489	2024-02-21	2021-02-15	3.25	3.89	3.38	3.6	0.003	0.56	0.0	0.04	13.96	0.00	2.020	4.78	0.06	5.4	94.6	0.0	-0.41	0.78	0.77	1.95	3.7	0.004	0.60	0.0	0.04	14.75	0.00	2.155	9.44	1.40	6.7	93.3	0.0	-0.61	0.48	0.79	0.81	1.82	31274	3980	12	0	28	0	0	logfile
✔	7NJ3	12371	2024-02-20	2021-02-15	4.48	4.72	—	4.6	0.004	0.70	1.0	0.05	14.40	0.00	1.907	8.92	0.38	4.2	95.8	0.0	-0.73	0.57	0.36	—	4.6	0.003	0.66	0.0	0.04	14.39	0.00	1.832	17.23	0.00	6.0	94.0	0.0	-1.08	2.77	0.71	0.61	—	28778	1795	6	23	0	0	13868	logfile
✔	7LQW	23490	2024-02-19	2021-02-15	4.47	7.28	4.96	4.6	0.003	0.79	1.0	0.05	13.53	0.00	0.911	5.63	0.12	4.6	95.4	0.1	-1.27	0.78	0.64	—	4.7	0.004	0.72	0.0	0.04	13.00	0.00	2.108	24.09	0.12	8.3	91.6	0.1	-1.43	1.44	0.87	0.83	—	25332	3374	8	0	26	0	0	logfile
✔	7LR0	23493	2024-02-24	2021-02-15	3.81	4.01	—	4.0	0.013	1.33	0.0	0.06	16.17	0.01	2.053	5.09	0.00	11.4	88.3	0.3	-4.75	0.60	0.79	2.46	4.0	0.003	0.61	0.0	0.04	16.48	0.00	1.928	15.29	1.79	9.3	90.7	0.0	-1.09	1.64	0.60	0.81	1.94	42849	2584	8	0	33	0	20936	logfile
✔	7NJ0	12368	2024-02-16	2021-02-14	3.6	3.25	—	3.6	0.005	0.66	0.0	0.04	13.21	0.00	2.196	6.69	0.00	8.9	91.1	0.0	-2.82	0.74	0.83	2.02	3.6	0.003	0.58	0.0	0.04	15.75	0.00	2.116	7.27	2.49	4.8	95.1	0.1	0.66	0.63	0.76	0.82	1.30	14330	1818	4	0	1	0	0	logfile
✔	7NiW	12367	2024-02-15	2021-02-14	3.8	3.54	—	3.7	0.015	1.29	0.0	0.07	17.10	0.01	2.078	27.93	2.44	15.5	84.3	0.2	-5.23	0.66	0.80	1.64	3.8	0.004	0.97	1.0	0.04	16.82	0.00	2.069	11.02	4.13	4.3	95.7	0.1	-0.70	1.29	0.63	0.75	1.09	12477	1585	4	0	8	0	0	logfile
✔	7NiV	12366	2024-02-16	2021-02-14	3.6	3.27	—	3.4	0.008	1.04	0.0	0.06	15.58	0.01	2.197	22.51	0.89	9.6	90.3	0.0	-5.19	0.53	0.62	1.53	3.4	0.004	0.72	0.0	0.04	16.27	0.00	2.073	14.08	3.57	7.1	92.9	0.0	-1.64	0.86	0.51	0.58	0.97	15724	2020	6	0	8	0	0	logfile
✔	7NiU	12365	2024-02-16	2021-02-14	4.2	3.68	—	3.5	0.008	1.01	0.0	0.05	16.08	0.01	2.110	34.12	1.67	14.7	85.0	0.2	-5.18	0.57	0.58	—	3.5	0.003	0.69	0.0	0.04	14.55	0.00	2.136	13.82	0.12	6.3	93.7	0.0	-1.75	2.21	0.56	0.56	—	15495	2015	6	0	2	0	0	logfile
✔	7NJ1	12369	2024-02-15	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.74	0.0	0.04	16.38	0.00	2.144	10.58	2.72	6.6	93.3	0.1	0.75	0.56	0.77	0.77	2.27	11096	1501	2	0	0	0	0	logfile
✔	7LQG	23485	2024-02-15	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.32	163.0	0.30	24.12	0.02	1.769	115.03	20.14	35.2	64.8	0.0	-8.00	1.14	0.67	0.87	3.69	12096	1152	144	0	0	0	0	logfile

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