Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P2L	17369	2024-02-24	2023-05-16	2.68	3.61	2.85	3.3	0.010	1.60	47.0	0.11	13.68	0.01	2.486	1.07	0.56	2.8	97.2	0.0	-1.64	0.78	0.67	2.92	3.3	0.004	0.79	0.0	0.04	15.28	0.00	2.063	13.13	1.09	3.9	96.1	0.0	0.82	0.79	0.82	0.86	1.89	40776	5152	24	0	8	0	0	logfile
✔	8JEC	36185	2024-02-17	2023-05-15	3.1	3.61	3.15	3.5	0.002	0.40	0.0	0.04	9.75	0.00	2.196	4.85	1.03	4.1	95.8	0.1	0.28	0.70	0.82	2.48	3.5	0.003	0.58	0.0	0.04	12.63	0.00	2.214	7.46	1.42	4.6	95.3	0.1	1.78	0.47	0.72	0.84	1.67	19680	2632	4	0	0	0	0	logfile
✔	8P2D	17361	2024-02-14	2023-05-15	2.59	2.21	2.59	2.0	0.002	0.51	0.0	0.04	12.79	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	2.0	0.003	0.67	0.0	0.04	16.03	0.00	2.060	13.60	2.45	6.9	93.1	0.0	-1.11	1.31	0.73	0.67	1.67	8793	1087	4	0	4	0	0	logfile
✔	8SV8	40782	2024-02-14	2023-05-15	3.38	3.59	—	3.5	0.004	0.72	0.0	0.04	16.38	0.01	2.199	10.96	0.54	5.5	94.4	0.1	-0.43	0.82	0.85	1.72	3.5	0.002	0.57	0.0	0.04	16.91	0.00	2.149	10.03	2.36	4.7	95.2	0.1	0.36	0.94	0.84	0.88	1.46	10208	1299	5	0	1	0	0	logfile
✔	8P28	17359	2024-02-18	2023-05-15	2.77	2.35	2.80	2.1	0.005	0.64	0.0	0.05	13.73	0.00	1.795	6.79	2.15	10.0	89.8	0.2	-1.36	0.78	0.77	3.56	2.1	0.004	0.68	0.0	0.04	15.95	0.00	1.895	8.32	3.45	7.2	92.8	0.0	-0.73	0.42	0.80	0.80	2.74	21141	2584	8	0	16	0	0	logfile
✔	8P27	17358	2024-02-14	2023-05-15	2.73	2.25	2.73	2.1	0.004	0.55	0.0	0.04	12.49	0.00	1.936	6.22	5.43	8.3	91.7	0.0	-2.06	0.79	0.77	3.73	2.1	0.004	0.63	0.0	0.05	16.46	0.00	1.872	8.40	5.74	8.0	92.0	0.0	-1.64	0.47	0.81	0.79	3.03	8810	1089	4	0	4	0	0	logfile
✔	8P2C	17360	2024-02-18	2023-05-15	2.59	2.23	2.67	2.0	0.003	0.49	0.0	0.04	13.17	0.00	1.935	5.71	2.68	6.8	93.0	0.1	-0.71	0.81	0.80	3.52	2.0	0.003	0.59	0.0	0.04	16.48	0.00	1.989	7.50	1.79	6.1	93.8	0.0	-0.30	0.57	0.82	0.81	2.95	21173	2588	8	0	16	0	0	logfile
✔	8P23	17357	2024-02-15	2023-05-14	3.17	2.45	3.19	2.2	0.004	0.69	2.0	0.05	13.20	0.01	2.090	5.91	4.71	5.8	93.7	0.5	-0.94	0.75	0.75	3.06	2.2	0.004	0.68	0.0	0.04	15.34	0.00	2.084	7.65	3.22	7.0	92.7	0.4	-0.58	0.55	0.78	0.79	2.53	11399	1401	4	0	6	0	0	logfile
✔	8JDA	36076	2024-02-13	2023-05-13	3.67	3.84	3.41	3.8	0.004	0.78	0.0	0.04	14.02	0.00	2.176	14.34	0.14	5.7	94.2	0.1	-1.44	0.58	0.70	0.59	3.8	0.003	0.71	0.0	0.04	16.24	0.00	2.230	14.94	3.00	4.5	95.5	0.0	-0.18	0.45	0.57	0.70	0.59	6526	848	2	0	0	0	0	logfile
✔	8SUR	40776	2024-02-18	2023-05-13	3.1	3.44	3.20	3.4	0.007	0.85	8.0	0.08	14.51	0.01	1.256	7.20	0.65	3.9	95.7	0.4	1.04	0.57	0.79	3.03	3.4	0.005	0.60	1.0	0.05	15.06	0.00	1.824	7.15	1.30	3.9	95.8	0.2	1.05	1.05	0.57	0.84	3.22	23085	1417	6	0	15	0	11381	logfile
✔	8SUX	40779	2024-02-17	2023-05-13	2.93	3.14	2.96	3.2	0.003	0.53	0.0	0.04	15.61	0.00	2.166	3.82	0.00	4.0	96.0	0.0	-0.31	0.56	0.70	2.87	3.2	0.002	0.54	0.0	0.04	17.92	0.00	2.120	5.71	2.31	3.6	96.4	0.0	-0.51	0.49	0.64	0.79	2.34	18101	2231	10	0	4	0	0	logfile
✔	8JD9	36077	2024-02-16	2023-05-13	2.87	3.05	2.89	3.1	0.002	0.56	0.0	0.04	13.88	0.01	2.162	9.02	0.06	5.2	94.4	0.3	1.03	0.64	0.78	1.95	3.1	0.004	0.62	0.0	0.04	16.30	0.01	2.124	11.22	1.85	5.3	94.4	0.3	1.08	1.14	0.65	0.81	1.62	14725	1870	3	0	2	0	0	logfile
✔	8JCU	36165	2024-02-15	2023-05-12	2.8	3.00	2.76	3.2	0.003	0.54	0.0	0.18	14.09	0.00	2.268	5.39	0.00	4.1	95.9	0.0	0.18	0.63	0.74	2.60	3.1	0.003	0.58	0.0	0.04	14.50	0.00	2.175	6.52	2.00	4.4	95.6	0.0	-0.12	0.45	0.64	0.78	2.62	10830	1527	4	0	4	0	0	logfile
✔	8SUG	40765	2024-02-14	2023-05-12	4.2	4.70	4.24	4.6	0.002	0.73	0.0	0.04	13.57	0.00	2.137	16.90	0.13	8.4	91.3	0.3	-2.39	0.51	0.77	—	4.6	0.003	0.76	0.0	0.04	13.56	0.00	2.032	20.36	0.24	9.4	90.4	0.2	-0.50	0.86	0.51	0.78	—	113355	15972	33	0	0	0	0	logfile
✔	8JD1	36172	2024-02-15	2023-05-12	3.7	3.87	3.63	3.8	0.002	0.50	0.0	0.04	12.60	0.00	2.228	6.47	0.21	6.8	93.2	0.0	-0.72	0.66	0.71	1.21	3.8	0.003	0.66	0.0	0.04	14.51	0.00	2.159	12.34	2.66	7.4	92.6	0.0	-0.98	1.21	0.65	0.69	1.44	10766	1508	4	0	7	0	0	logfile
✔	8JD0	36171	2024-02-15	2023-05-12	3.3	3.56	3.24	3.5	0.004	0.49	0.0	0.04	13.56	0.00	2.278	5.98	0.10	4.3	95.7	0.0	0.18	0.66	0.69	1.55	3.5	0.003	0.58	0.0	0.04	14.15	0.00	2.207	9.65	2.59	5.7	94.3	0.0	-0.95	0.41	0.70	0.79	2.32	11264	1532	4	0	12	0	0	logfile
✔	8JCV	36166	2024-02-15	2023-05-12	3.4	3.66	3.32	3.6	0.003	0.56	0.0	0.19	14.87	0.00	2.300	7.05	0.11	4.5	95.5	0.0	1.15	0.67	0.72	1.48	3.6	0.004	0.63	0.0	0.04	14.84	0.00	2.209	9.56	2.15	6.3	93.7	0.0	0.46	0.53	0.70	0.79	1.91	10667	1514	4	0	4	0	0	logfile
✔	8JD3	36174	2024-02-16	2023-05-12	3.3	3.50	3.27	3.5	0.004	0.53	0.0	0.10	13.40	0.00	2.210	6.60	0.13	4.0	96.0	0.0	-0.23	0.62	0.64	1.75	3.5	0.005	0.66	0.0	0.04	15.01	0.00	2.141	10.15	3.27	6.2	93.8	0.0	-0.78	0.54	0.65	0.70	1.67	15770	2148	7	0	5	0	0	logfile
✔	8JD4	36175	2024-02-15	2023-05-12	2.9	3.04	2.81	3.0	0.003	0.53	0.0	0.04	13.24	0.00	2.289	6.36	0.20	3.6	96.4	0.0	-0.19	0.70	0.79	1.70	3.0	0.004	0.63	0.0	0.04	14.55	0.00	2.141	9.27	1.93	4.8	95.2	0.1	0.35	2.18	0.73	0.85	2.45	10674	1494	4	0	3	0	0	logfile
✔	8JD2	36173	2024-02-15	2023-05-12	2.8	2.97	2.79	3.0	0.002	0.44	0.0	0.04	14.98	0.00	2.213	4.22	0.20	4.9	95.1	0.0	-0.38	0.66	0.79	3.20	3.0	0.003	0.53	0.0	0.04	14.43	0.00	2.137	6.08	3.23	6.1	93.9	0.0	-0.12	0.41	0.64	0.81	2.94	10730	1501	4	0	2	0	0	logfile

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