Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JD4	36175	2024-02-15	2023-05-12	2.9	3.04	2.81	3.0	0.003	0.53	0.0	0.04	13.24	0.00	2.289	6.36	0.20	3.6	96.4	0.0	-0.19	0.70	0.79	1.70	3.0	0.004	0.63	0.0	0.04	14.55	0.00	2.141	9.27	1.93	4.8	95.2	0.1	0.35	2.18	0.73	0.85	2.45	10674	1494	4	0	3	0	0	logfile
✔	8JD0	36171	2024-02-15	2023-05-12	3.3	3.56	3.24	3.5	0.004	0.49	0.0	0.04	13.56	0.00	2.278	5.98	0.10	4.3	95.7	0.0	0.18	0.66	0.69	1.55	3.5	0.003	0.58	0.0	0.04	14.15	0.00	2.207	9.65	2.59	5.7	94.3	0.0	-0.95	0.41	0.70	0.79	2.32	11264	1532	4	0	12	0	0	logfile
✔	8JD3	36174	2024-02-16	2023-05-12	3.3	3.50	3.27	3.5	0.004	0.53	0.0	0.10	13.40	0.00	2.210	6.60	0.13	4.0	96.0	0.0	-0.23	0.62	0.64	1.75	3.5	0.005	0.66	0.0	0.04	15.01	0.00	2.141	10.15	3.27	6.2	93.8	0.0	-0.78	0.54	0.65	0.70	1.67	15770	2148	7	0	5	0	0	logfile
✔	8JCU	36165	2024-02-15	2023-05-12	2.8	3.00	2.76	3.2	0.003	0.54	0.0	0.18	14.09	0.00	2.268	5.39	0.00	4.1	95.9	0.0	0.18	0.63	0.74	2.60	3.1	0.003	0.58	0.0	0.04	14.50	0.00	2.175	6.52	2.00	4.4	95.6	0.0	-0.12	0.45	0.64	0.78	2.62	10830	1527	4	0	4	0	0	logfile
✔	8SUG	40765	2024-02-14	2023-05-12	4.2	4.70	4.24	4.6	0.002	0.73	0.0	0.04	13.57	0.00	2.137	16.90	0.13	8.4	91.3	0.3	-2.39	0.51	0.77	—	4.6	0.003	0.76	0.0	0.04	13.56	0.00	2.032	20.36	0.24	9.4	90.4	0.2	-0.50	0.86	0.51	0.78	—	113355	15972	33	0	0	0	0	logfile
✔	8JD6	36177	2024-02-17	2023-05-12	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.11	0.00	2.218	12.40	0.35	5.9	94.0	0.0	-0.74	0.62	0.65	0.86	3.4	0.003	0.62	0.0	0.04	16.03	0.00	2.096	15.33	3.92	7.4	92.5	0.0	-1.23	1.59	0.67	0.73	1.30	17192	2312	8	0	1	0	0	logfile
✔	8JD5	36176	2024-02-17	2023-05-12	3.6	3.48	—	3.5	0.005	0.64	1.0	0.04	14.13	0.00	2.201	9.27	0.39	6.7	93.2	0.1	-0.84	0.62	0.68	1.58	3.5	0.003	0.66	0.0	0.04	15.06	0.00	2.144	10.47	2.97	7.8	92.2	0.0	-0.98	0.58	0.69	0.73	1.63	18028	2389	8	0	10	0	0	logfile
✔	8JCH	36162	2024-02-24	2023-05-11	2.7	3.42	2.84	3.2	0.002	0.54	0.0	0.04	18.22	0.00	2.031	8.60	2.29	4.3	95.7	0.0	0.88	0.81	0.82	1.90	3.2	0.003	0.59	0.0	0.04	18.25	0.00	2.017	8.90	2.40	4.6	95.4	0.0	0.62	0.45	0.79	0.82	2.06	42732	5119	26	99	11	0	0	logfile
✔	8SUB	40763	2024-02-14	2023-05-11	2.89	3.11	3.05	3.1	0.005	0.70	0.0	0.05	15.08	0.00	1.948	2.94	0.00	5.8	94.2	0.0	-1.48	0.71	0.84	3.31	3.2	0.002	0.59	1.0	0.04	16.93	0.00	2.008	3.79	1.37	4.1	95.9	0.0	-0.50	1.27	0.71	0.84	2.54	61226	7611	34	0	22	0	0	logfile
✔	8JCE	36159	2024-02-24	2023-05-11	2.41	2.93	2.39	2.7	0.005	0.75	0.0	0.05	20.04	0.00	2.023	2.67	0.59	1.9	98.1	0.0	-0.35	0.83	0.91	4.82	2.7	0.004	1.04	5.0	0.05	18.46	0.00	1.942	2.37	0.52	2.9	97.0	0.1	0.22	0.88	0.82	0.90	4.32	44304	5448	36	0	36	588	0	logfile
✔	8STE	40759	2024-02-13	2023-05-10	3.34	3.55	3.29	3.5	0.005	0.69	0.0	0.04	14.38	0.00	1.979	10.65	0.00	6.2	93.8	0.0	-0.32	0.57	0.80	2.57	3.5	0.003	0.64	0.0	0.04	16.23	0.00	2.281	9.04	2.07	5.4	94.6	0.0	-0.10	1.18	0.57	0.83	2.22	5816	712	4	0	2	0	0	logfile
✔	8ST4	40757	2024-02-25	2023-05-09	2.35	2.44	2.34	2.4	0.004	0.58	0.0	0.05	15.89	0.00	1.956	4.13	0.03	3.5	96.5	0.0	0.04	0.78	0.82	4.20	2.4	0.003	0.67	0.0	0.04	15.43	0.00	1.913	4.35	1.01	3.3	96.7	0.0	0.25	1.15	0.76	0.86	4.20	50159	3143	22	0	18	7	24869	logfile
✔	8oZi	17310	2024-02-22	2023-05-09	3.22	3.45	3.30	3.4	0.005	0.77	0.0	0.14	17.64	0.00	2.121	10.71	0.00	4.8	94.7	0.5	-0.91	0.70	0.77	1.97	3.4	0.004	0.62	0.0	0.04	18.54	0.00	2.123	12.71	1.85	5.5	94.3	0.2	-0.64	0.47	0.70	0.80	2.07	32092	3564	18	136	2	0	0	logfile
✔	8oZF	17307	2024-02-22	2023-05-09	3.73	4.14	3.95	3.8	0.006	0.75	0.0	0.04	16.97	0.01	2.112	13.75	0.00	4.9	94.8	0.4	-0.84	0.72	0.71	0.70	3.9	0.003	0.68	0.0	0.04	18.46	0.00	2.160	15.11	1.60	5.2	94.5	0.3	-0.80	0.68	0.73	0.73	0.69	32076	3564	18	136	2	0	0	logfile
✔	8ST2	40755	2024-02-24	2023-05-09	2.94	3.08	2.94	3.0	0.005	0.55	0.0	0.04	15.40	0.00	1.820	5.13	0.00	3.9	96.1	0.0	0.11	0.77	0.85	3.34	3.0	0.003	0.52	0.0	0.04	15.27	0.00	2.054	4.73	1.08	3.7	96.3	0.0	0.30	0.45	0.76	0.85	3.21	44184	2741	20	0	19	8	21937	logfile
✔	8oZC	17304	2024-02-13	2023-05-09	4.0	4.25	4.05	4.0	0.002	0.62	0.0	0.04	13.40	0.00	2.124	14.20	0.00	6.7	92.9	0.3	-1.97	0.70	0.62	—	4.1	0.003	0.76	0.0	0.05	16.06	0.00	2.095	20.69	2.69	8.0	91.7	0.2	-2.28	1.27	0.72	0.66	—	7478	913	2	0	0	0	0	logfile
✔	8oZG	17308	2024-02-22	2023-05-09	3.37	3.80	3.75	3.8	0.006	0.73	0.0	0.04	17.23	0.01	2.177	12.91	0.03	5.2	94.5	0.3	-0.80	0.67	0.76	1.57	3.8	0.003	0.62	0.0	0.04	18.37	0.00	2.067	13.77	1.66	5.2	94.6	0.1	-0.46	1.32	0.67	0.78	1.86	32077	3564	18	136	3	0	0	logfile
✔	8oZD	17305	2024-02-16	2023-05-09	3.89	4.28	3.82	4.0	0.003	0.59	0.0	0.04	16.89	0.00	2.178	13.09	0.00	4.7	94.8	0.5	-0.29	0.77	0.74	0.95	4.0	0.003	0.69	0.0	0.04	18.40	0.00	2.123	17.24	2.50	5.2	94.5	0.3	-0.41	1.51	0.78	0.77	0.86	16001	1782	8	68	0	0	0	logfile
✔	8ST3	40756	2024-02-25	2023-05-09	2.93	3.08	2.92	3.0	0.005	0.55	0.0	0.04	15.96	0.00	1.807	5.01	0.07	4.3	95.7	0.0	0.15	0.78	0.86	3.82	3.0	0.004	0.54	0.0	0.04	15.57	0.00	1.886	5.40	0.94	3.6	96.3	0.0	0.32	0.48	0.77	0.86	3.77	50327	3155	20	0	21	7	24962	logfile
✔	8SSZ	40752	2024-02-25	2023-05-09	2.64	2.33	2.60	2.5	0.004	0.60	0.0	0.06	14.25	0.00	1.984	5.25	0.00	4.4	95.6	0.0	0.55	0.71	0.82	3.44	2.5	0.005	0.59	0.0	0.06	15.32	0.00	1.974	4.46	1.12	4.4	95.6	0.0	0.46	0.52	0.70	0.82	3.35	51441	3246	22	0	24	7	25319	logfile

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