Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ST4	40757	2024-02-25	2023-05-09	2.35	2.44	2.34	2.4	0.004	0.58	0.0	0.05	15.89	0.00	1.956	4.13	0.03	3.5	96.5	0.0	0.04	0.78	0.82	4.20	2.4	0.003	0.67	0.0	0.04	15.43	0.00	1.913	4.35	1.01	3.3	96.7	0.0	0.25	1.15	0.76	0.86	4.20	50159	3143	22	0	18	7	24869	logfile
✔	8oZD	17305	2024-02-16	2023-05-09	3.89	4.28	3.82	4.0	0.003	0.59	0.0	0.04	16.89	0.00	2.178	13.09	0.00	4.7	94.8	0.5	-0.29	0.77	0.74	0.95	4.0	0.003	0.69	0.0	0.04	18.40	0.00	2.123	17.24	2.50	5.2	94.5	0.3	-0.41	1.51	0.78	0.77	0.86	16001	1782	8	68	0	0	0	logfile
✔	8oZF	17307	2024-02-22	2023-05-09	3.73	4.14	3.95	3.8	0.006	0.75	0.0	0.04	16.97	0.01	2.112	13.75	0.00	4.9	94.8	0.4	-0.84	0.72	0.71	0.70	3.9	0.003	0.68	0.0	0.04	18.46	0.00	2.160	15.11	1.60	5.2	94.5	0.3	-0.80	0.68	0.73	0.73	0.69	32076	3564	18	136	2	0	0	logfile
✔	8JBG	36145	2024-02-14	2023-05-08	2.8	2.88	2.76	2.9	0.002	0.54	0.0	0.04	17.54	0.00	2.106	9.23	4.36	3.9	96.1	0.0	-0.10	0.67	0.82	2.97	2.9	0.002	0.58	0.0	0.04	17.59	0.00	2.134	9.17	2.94	4.0	96.0	0.0	0.95	0.30	0.65	0.83	2.76	8750	1139	6	0	0	0	0	logfile
✔	8SSA	40749	2024-02-21	2023-05-08	3.88	4.18	3.96	4.1	0.010	1.32	0.0	0.06	14.93	0.01	2.213	6.33	1.00	11.4	87.6	1.0	-5.19	0.70	0.77	2.06	4.1	0.004	0.78	0.0	0.04	16.24	0.00	2.060	17.53	2.40	10.2	89.6	0.2	-1.29	1.27	0.69	0.74	1.50	30888	3840	10	0	13	0	0	logfile
✔	8SS3	40742	2024-02-17	2023-05-08	3.21	3.40	3.30	3.4	0.047	1.90	0.0	0.69	28.24	0.01	2.123	11.20	0.52	7.6	91.7	0.7	-6.01	0.62	0.80	3.60	3.4	0.006	1.29	0.0	0.14	22.12	0.00	2.140	9.62	3.40	7.7	92.0	0.3	-0.28	1.30	0.67	0.88	3.35	19887	2280	12	0	65	0	0	logfile
✔	8SS8	40747	2024-02-20	2023-05-08	2.81	3.02	2.88	3.0	0.016	1.43	0.0	0.18	15.64	0.01	2.255	3.89	1.33	7.1	92.2	0.7	-4.85	0.72	0.81	3.89	3.0	0.003	0.74	0.0	0.05	16.37	0.00	2.188	8.60	2.54	5.6	94.3	0.2	0.12	1.13	0.74	0.83	3.40	28487	3514	12	0	26	11	0	logfile
✔	8oZ6	17299	2024-02-22	2023-05-08	3.97	4.30	4.11	4.0	0.005	0.73	0.0	0.04	16.73	0.01	2.093	14.91	0.00	5.0	94.7	0.3	-1.10	0.67	0.58	0.41	4.0	0.003	0.74	0.0	0.04	18.74	0.00	2.016	23.80	2.66	6.6	93.2	0.2	-1.27	1.45	0.69	0.64	0.26	32004	3564	16	136	0	0	0	logfile
✔	8SS2	40741	2024-02-21	2023-05-08	3.58	3.90	3.68	3.9	0.025	1.64	0.0	0.36	18.88	0.01	2.176	7.42	0.80	15.0	84.3	0.7	-5.79	0.75	0.82	2.74	3.9	0.003	0.93	0.0	0.08	17.32	0.00	2.119	11.03	2.09	11.4	88.4	0.2	-1.73	1.43	0.74	0.82	1.82	31146	3802	12	0	35	0	0	logfile
✔	8SSB	40750	2024-02-17	2023-05-08	3.66	3.93	3.74	3.9	0.009	1.55	0.0	0.06	17.48	0.01	2.258	7.33	0.72	11.4	87.4	1.2	-5.92	0.67	0.77	1.98	3.8	0.004	0.84	0.0	0.04	17.41	0.01	2.068	19.00	3.63	10.5	89.3	0.2	-1.24	3.73	0.70	0.82	1.73	19048	2304	12	0	29	0	0	logfile
✔	8SS5	40744	2024-02-16	2023-05-08	3.56	3.87	3.72	3.8	0.006	1.22	0.0	0.06	11.20	0.01	2.218	3.90	0.24	10.6	88.3	1.1	-5.78	0.57	0.74	2.01	3.8	0.006	0.79	0.0	0.05	15.22	0.01	2.129	12.48	2.43	12.3	87.4	0.4	-1.48	2.42	0.63	0.75	1.94	15637	1998	5	0	1	0	0	logfile
✔	8SS9	40748	2024-02-16	2023-05-08	2.72	2.88	2.72	2.9	0.014	1.36	0.0	0.23	17.97	0.01	2.329	4.43	0.36	3.9	95.8	0.3	-4.92	0.67	0.78	3.56	2.9	0.004	0.82	0.0	0.06	18.38	0.00	2.039	7.98	2.38	4.6	95.4	0.0	0.49	2.84	0.70	0.82	3.37	16319	1986	12	0	26	15	0	logfile
✔	8JAU	36134	2024-02-17	2023-05-07	3.22	3.52	3.25	3.6	0.004	0.52	0.0	0.04	14.40	0.00	2.183	7.18	0.05	4.0	96.0	0.0	-0.99	0.70	0.75	3.31	3.5	0.004	0.54	0.0	0.04	16.34	0.00	2.183	10.22	1.78	4.7	95.3	0.0	0.36	0.40	0.71	0.85	2.83	17064	2096	11	0	1	0	0	logfile
✔	8JAS	36133	2024-02-24	2023-05-07	3.54	3.87	3.64	3.8	0.002	0.54	0.0	0.04	14.77	0.00	2.033	8.47	0.02	3.3	96.7	0.0	-1.27	0.75	0.76	1.64	3.8	0.006	0.70	0.0	0.04	16.93	0.00	1.881	16.65	2.15	4.6	95.4	0.0	0.02	0.65	0.76	0.82	1.21	39287	4842	25	0	8	0	0	logfile
✔	8JAR	36132	2024-02-17	2023-05-07	3.3	3.63	3.32	3.6	0.004	0.54	0.0	0.04	14.40	0.00	2.172	7.43	0.00	3.4	96.6	0.0	-0.87	0.74	0.81	2.67	3.6	0.004	0.55	0.0	0.04	16.50	0.00	2.129	11.33	1.70	3.5	96.5	0.0	0.44	0.92	0.74	0.85	2.28	16841	2071	11	0	1	0	0	logfile
✔	8JB0	36139	2024-02-21	2023-05-07	4.2	4.12	4.27	3.8	0.003	0.62	0.0	0.04	16.01	0.00	2.196	13.62	0.09	2.8	97.0	0.2	2.31	0.76	0.79	—	3.8	0.004	0.62	0.0	0.04	16.48	0.00	2.097	12.51	0.06	3.3	96.6	0.2	2.23	0.52	0.77	0.81	—	31387	3858	48	0	36	0	0	logfile
✔	8JAV	36135	2024-02-24	2023-05-07	3.44	3.78	3.50	3.7	0.004	0.53	0.0	0.04	14.99	0.00	2.067	7.56	0.00	4.1	95.9	0.0	-1.39	0.76	0.78	1.97	3.7	0.003	0.61	0.0	0.04	16.94	0.00	2.124	13.26	1.73	4.0	96.0	0.0	0.39	0.98	0.79	0.83	1.45	39339	4846	26	0	8	0	0	logfile
✔	8JAX	36137	2024-02-21	2023-05-07	3.27	3.67	3.22	3.4	0.005	0.83	0.0	0.04	18.67	0.00	1.139	7.77	0.36	2.4	97.4	0.2	3.04	0.82	0.90	1.34	3.4	0.004	0.63	0.0	0.03	18.98	0.00	2.074	7.47	3.23	2.4	97.4	0.2	3.73	0.28	0.83	0.91	1.27	31889	3858	48	0	36	0	0	logfile
✔	8JAL	36129	2024-02-17	2023-05-06	3.3	3.48	3.27	3.4	0.003	0.63	0.0	0.04	14.49	0.00	2.255	7.12	0.00	3.2	96.8	0.0	-1.29	0.71	0.77	2.72	3.4	0.004	0.58	0.0	0.04	16.50	0.00	2.200	10.85	1.44	3.9	96.1	0.0	0.80	0.47	0.77	0.87	2.19	17226	2115	11	0	1	0	0	logfile
✔	8JAJ	36127	2024-02-25	2023-05-06	3.9	4.09	3.79	3.8	0.002	0.51	0.0	0.04	12.66	0.00	2.064	6.03	0.00	3.2	96.6	0.2	0.70	0.52	0.74	0.61	3.8	0.003	0.61	0.0	0.04	14.87	0.00	2.122	7.32	1.53	4.2	95.4	0.4	-0.06	1.69	0.56	0.86	1.59	47664	6312	12	0	0	0	0	logfile

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