Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JAJ	36127	2024-02-25	2023-05-06	3.9	4.09	3.79	3.8	0.002	0.51	0.0	0.04	12.66	0.00	2.064	6.03	0.00	3.2	96.6	0.2	0.70	0.52	0.74	0.61	3.8	0.003	0.61	0.0	0.04	14.87	0.00	2.122	7.32	1.53	4.2	95.4	0.4	-0.06	1.69	0.56	0.86	1.59	47664	6312	12	0	0	0	0	logfile
✔	8JAQ	36131	2024-02-24	2023-05-06	3.26	3.56	3.32	3.5	0.003	0.55	0.0	0.04	14.20	0.00	2.028	9.03	0.07	3.6	96.4	0.0	-1.58	0.72	0.74	2.88	3.5	0.003	0.57	0.0	0.04	16.41	0.00	2.024	12.96	1.59	4.1	95.9	0.0	0.20	0.94	0.75	0.79	2.08	39233	4833	26	0	8	0	0	logfile
✔	8SR2	40718	2024-02-24	2023-05-05	2.36	2.47	2.36	2.6	0.015	1.49	6.0	0.06	25.58	0.01	1.592	38.17	12.85	8.5	90.1	1.4	-0.97	0.63	0.62	2.14	2.4	0.004	0.65	0.0	0.04	19.80	0.00	1.864	47.79	5.03	6.8	93.1	0.1	0.44	1.50	0.72	0.74	2.67	22961	2577	27	0	69	401	76	logfile
✔	8SR0	40716	2024-02-15	2023-05-05	3.53	3.69	3.52	3.6	0.005	0.80	2.0	0.05	14.06	0.01	2.139	9.79	0.34	8.0	92.0	0.0	-2.68	0.70	0.72	2.32	3.6	0.004	0.64	0.0	0.04	14.67	0.00	2.157	9.01	1.53	10.7	89.3	0.0	-2.28	0.46	0.71	0.73	2.28	11414	816	8	0	2	0	5426	logfile
✔	8JA7	36125	2024-02-15	2023-05-05	3.02	3.83	3.16	3.5	0.004	0.63	0.0	0.04	13.42	0.00	2.158	15.41	0.00	4.8	95.2	0.0	-3.10	0.71	0.86	2.48	3.5	0.003	0.62	0.0	0.04	14.94	0.00	2.142	13.48	1.97	4.7	95.3	0.0	-0.48	0.94	0.69	0.87	2.01	13601	1784	6	0	2	0	0	logfile
✔	8JA0	36123	2024-02-15	2023-05-05	3.52	3.71	3.53	3.6	0.002	0.57	0.0	0.04	20.78	0.00	2.187	9.41	0.00	5.6	93.7	0.6	-0.68	0.73	0.79	1.35	3.6	0.003	0.59	0.0	0.04	20.57	0.00	2.179	9.84	2.51	6.3	93.4	0.4	-0.32	0.31	0.73	0.80	1.77	11291	1114	3	115	0	0	0	logfile
✔	8SRM	40735	2024-02-13	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.006	0.64	0.0	0.04	5.47	0.00	2.070	5.40	0.00	7.2	92.8	0.0	-0.25	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	8J9X	36118	2024-02-16	2023-05-05	3.0	4.16	3.04	3.3	0.003	0.59	0.0	0.04	17.55	0.00	2.224	10.24	0.29	4.8	95.2	0.0	0.43	0.92	0.84	1.64	3.4	0.003	0.61	0.0	0.04	18.75	0.00	2.055	13.36	0.81	6.2	93.8	0.0	0.49	0.58	0.93	0.89	2.41	13890	1556	10	60	4	0	0	logfile
✔	8JAF	36126	2024-02-13	2023-05-05	3.1	2.18	3.07	1.5	0.008	0.97	0.0	0.05	12.50	0.01	2.237	17.42	0.87	7.3	92.7	0.0	-2.04	0.64	0.56	4.02	1.9	0.004	0.69	0.0	0.04	13.15	0.01	2.231	14.27	2.91	5.6	94.4	0.0	-1.42	0.46	0.66	0.58	2.61	3862	549	4	0	0	0	0	logfile
✔	8J9Z	36120	2024-02-15	2023-05-05	3.13	3.40	3.17	3.4	0.002	0.41	0.0	0.04	16.68	0.00	2.177	4.52	0.15	2.2	97.8	0.0	1.31	0.68	0.81	3.00	3.4	0.003	0.46	0.0	0.04	17.10	0.00	2.140	5.30	2.60	1.8	98.2	0.0	1.02	0.27	0.72	0.85	2.88	12154	1494	2	0	0	0	0	logfile
✔	8SR4	40719	2024-02-24	2023-05-05	3.12	3.59	3.15	3.4	0.005	0.78	0.0	0.05	14.00	0.00	1.413	19.10	2.19	7.2	92.1	0.7	0.06	0.65	0.76	2.76	3.4	0.004	0.76	1.0	0.04	15.54	0.00	1.889	11.77	1.87	5.3	94.6	0.1	0.84	0.82	0.73	0.85	2.71	20907	2577	15	0	9	0	0	logfile
✔	8J9W	36117	2024-02-16	2023-05-05	2.76	3.63	2.76	3.1	0.005	0.84	3.0	0.05	18.06	0.01	2.175	8.03	0.07	4.3	95.7	0.0	-1.21	0.88	0.80	1.55	3.1	0.003	0.66	0.0	0.04	18.15	0.00	2.123	12.67	1.84	4.5	95.4	0.1	0.13	1.01	0.89	0.81	1.60	13841	1550	9	60	4	0	0	logfile
✔	8SR5	40720	2024-02-23	2023-05-05	3.22	3.44	3.27	3.4	0.006	0.78	0.0	0.05	13.26	0.00	1.949	13.27	0.77	5.8	93.8	0.4	0.25	0.64	0.82	2.68	3.4	0.003	0.59	0.0	0.04	14.99	0.00	2.043	10.10	1.54	5.0	95.0	0.0	0.57	0.76	0.69	0.88	2.56	18588	2310	12	0	6	0	0	logfile
✔	8SRP	40737	2024-02-14	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.005	0.66	0.0	0.04	28.48	0.00	2.215	11.24	6.07	9.0	91.0	0.0	-0.49	0.91	0.75	0.73	2.60	9516	849	14	214	0	0	0	logfile
✔	8J9Y	36119	2024-02-15	2023-05-05	3.16	3.43	3.20	3.5	0.002	0.50	0.0	0.04	15.11	0.00	2.167	5.43	0.76	2.2	97.8	0.0	0.63	0.70	0.82	2.44	3.5	0.003	0.47	0.0	0.04	15.71	0.00	2.176	6.00	2.37	2.2	97.8	0.0	1.41	1.01	0.71	0.84	2.92	12154	1494	2	0	0	0	0	logfile
✔	8SRo	40736	2024-02-13	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.59	0.0	0.03	25.89	0.00	2.372	7.58	3.14	7.7	92.3	0.0	-0.84	0.91	0.65	0.79	2.78	4132	345	8	72	0	0	0	logfile
✔	8SR1	40717	2024-02-24	2023-05-05	2.18	2.37	2.20	2.3	0.009	1.11	0.0	0.05	22.92	0.01	1.795	20.32	3.93	6.0	93.5	0.5	0.61	0.68	0.66	2.68	2.3	0.004	0.72	0.0	0.05	20.15	0.00	1.950	15.50	2.19	5.0	94.8	0.3	0.58	0.66	0.78	0.78	2.63	22854	2577	27	0	66	351	0	logfile
✔	8SQW	40714	2024-02-24	2023-05-04	2.16	2.29	2.17	2.2	0.009	1.09	1.0	0.05	22.73	0.01	1.642	19.09	4.12	6.1	93.3	0.6	0.57	0.75	0.76	3.81	2.2	0.003	0.66	0.0	0.05	19.63	0.00	1.960	11.84	2.51	4.7	95.0	0.3	0.72	0.54	0.81	0.85	4.27	22850	2577	27	0	66	353	0	logfile
✔	8SQN	40711	2024-02-13	2023-05-04	3.89	4.20	3.98	4.1	0.003	0.60	0.0	0.05	15.80	0.01	1.927	12.10	0.29	4.5	95.5	0.0	-0.99	0.65	0.72	1.62	4.1	0.005	0.68	0.0	0.05	16.14	0.00	1.887	14.07	4.16	4.9	95.1	0.0	-1.14	1.28	0.67	0.73	1.86	56304	3677	18	0	9	0	27807	logfile
✔	8SQJ	40707	2024-02-19	2023-05-04	3.06	3.29	3.09	3.3	0.006	0.51	0.0	0.04	16.18	0.00	1.600	3.63	3.69	3.9	96.1	0.0	-0.63	0.69	0.83	4.24	3.3	0.002	0.48	0.0	0.04	17.11	0.00	1.992	3.51	2.67	3.1	96.9	0.0	0.31	0.60	0.71	0.84	3.85	26044	1486	16	85	3	139	12389	logfile

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