Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SQJ	40707	2024-02-19	2023-05-04	3.06	3.29	3.09	3.3	0.006	0.51	0.0	0.04	16.18	0.00	1.600	3.63	3.69	3.9	96.1	0.0	-0.63	0.69	0.83	4.24	3.3	0.002	0.48	0.0	0.04	17.11	0.00	1.992	3.51	2.67	3.1	96.9	0.0	0.31	0.60	0.71	0.84	3.85	26044	1486	16	85	3	139	12389	logfile
✔	8J9N	36111	2024-02-14	2023-05-04	3.5	2.42	3.55	2.2	0.004	0.87	0.0	0.05	13.71	0.01	2.245	6.81	0.00	6.0	94.0	0.0	-1.50	0.74	0.72	2.30	2.2	0.004	0.71	0.0	0.04	16.12	0.00	2.087	11.87	3.78	6.3	93.7	0.0	-0.58	0.39	0.74	0.72	1.99	8483	1107	5	0	0	0	0	logfile
✔	8SQW	40714	2024-02-24	2023-05-04	2.16	2.29	2.17	2.2	0.009	1.09	1.0	0.05	22.73	0.01	1.642	19.09	4.12	6.1	93.3	0.6	0.57	0.75	0.76	3.81	2.2	0.003	0.66	0.0	0.05	19.63	0.00	1.960	11.84	2.51	4.7	95.0	0.3	0.72	0.54	0.81	0.85	4.27	22850	2577	27	0	66	353	0	logfile
✔	8oYi	17287	2024-02-24	2023-05-04	2.19	2.47	2.31	2.4	0.009	1.05	3.0	0.05	22.70	0.00	1.958	19.64	4.53	5.5	93.6	0.8	0.59	0.73	0.79	3.84	2.4	0.005	0.80	1.0	0.05	20.06	0.00	1.974	10.28	2.70	4.7	95.0	0.2	0.45	0.75	0.76	0.87	4.08	22849	2577	27	0	66	352	0	logfile
✔	8SQK	40708	2024-02-19	2023-05-04	3.01	3.26	3.06	3.3	0.008	0.61	2.0	0.04	16.12	0.00	1.601	4.33	2.05	4.1	95.9	0.0	-0.91	0.68	0.82	3.98	3.3	0.002	0.47	0.0	0.04	16.29	0.00	1.856	3.62	2.52	3.0	97.0	0.0	0.03	0.30	0.69	0.84	3.62	25550	1487	14	70	3	131	12205	logfile
✔	8SQ9	40699	2024-02-19	2023-05-04	2.9	3.13	—	3.1	0.007	0.55	0.0	0.04	15.02	0.00	1.877	4.53	2.38	4.7	95.2	0.1	0.07	0.57	0.72	3.98	3.1	0.003	0.47	0.0	0.04	16.33	0.00	1.920	4.45	2.14	4.3	95.7	0.1	0.44	0.31	0.65	0.79	3.47	25412	1469	13	67	8	242	12087	logfile
✔	8SPV	40687	2024-02-18	2023-05-03	3.06	3.08	2.95	3.1	0.003	0.57	0.0	0.04	12.15	0.00	2.159	2.92	0.78	1.1	98.5	0.3	0.32	0.68	0.71	2.13	3.1	0.008	0.89	0.0	0.05	16.59	0.01	2.055	10.74	5.13	5.9	94.1	0.0	-0.69	0.86	0.72	0.76	1.89	21804	2835	6	0	0	0	0	logfile
✔	8J9K	36110	2024-02-13	2023-05-03	3.5	3.73	3.69	3.9	0.004	0.76	0.0	0.05	15.32	0.00	2.247	7.50	0.95	8.8	91.2	0.0	-2.39	0.76	0.79	2.35	3.9	0.004	0.67	0.0	0.04	16.03	0.00	2.215	10.40	5.24	6.4	93.5	0.2	-1.58	1.31	0.77	0.80	2.22	4284	590	3	0	0	0	0	logfile
✔	8SPW	40688	2024-02-18	2023-05-03	3.5	3.84	3.66	3.9	0.003	0.61	0.0	0.04	13.74	0.00	1.846	6.47	2.11	2.6	97.4	0.0	-0.04	0.70	0.68	1.14	3.9	0.005	0.78	0.0	0.05	16.89	0.01	1.834	13.55	4.18	7.2	92.8	0.0	-1.16	0.87	0.72	0.74	1.02	21960	2835	11	0	11	0	0	logfile
✔	8SPo	40680	2024-02-21	2023-05-03	2.98	2.34	3.17	2.1	0.004	0.60	0.0	0.26	18.84	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.72	0.0	0.04	18.88	0.00	1.817	12.21	2.22	6.6	93.4	0.0	-1.13	1.34	0.57	0.49	1.24	31307	3428	22	154	6	0	0	logfile
✔	8SPX	40689	2024-02-18	2023-05-03	2.95	3.19	3.01	3.3	0.004	0.63	0.0	0.05	13.88	0.00	1.895	4.76	2.03	2.7	97.3	0.0	-0.28	0.66	0.66	1.49	3.2	0.006	0.81	0.0	0.05	17.49	0.01	1.797	12.03	4.31	6.4	93.6	0.0	-1.14	1.26	0.68	0.73	1.49	22000	2836	12	0	13	0	0	logfile
✔	8SPU	40686	2024-02-16	2023-05-03	2.8	3.51	2.94	3.2	0.008	0.91	3.0	0.05	27.15	0.01	1.874	10.56	0.47	4.4	95.6	0.1	-0.88	0.87	0.86	3.01	3.2	0.006	0.65	0.0	0.04	27.17	0.00	2.141	8.34	2.98	4.5	95.5	0.0	1.88	1.63	0.86	0.88	2.89	16181	1285	13	298	0	0	0	logfile
✔	8SPS	40683	2024-02-16	2023-05-03	3.0	3.64	3.06	3.4	0.008	0.88	3.0	0.05	27.01	0.01	0.574	10.67	0.53	4.6	95.3	0.1	-0.87	0.84	0.82	2.70	3.4	0.003	0.66	0.0	0.04	26.70	0.00	2.188	10.66	2.22	4.1	95.9	0.0	1.73	0.70	0.84	0.85	2.52	16515	1334	14	294	0	0	0	logfile
✔	8J8V	36081	2024-02-14	2023-05-02	3.22	3.39	3.26	3.4	0.005	0.72	0.0	0.05	13.27	0.00	2.228	4.92	0.98	5.1	94.9	0.0	0.23	0.76	0.81	3.25	3.4	0.003	0.90	1.0	0.05	14.41	0.00	2.189	6.20	1.46	5.2	94.8	0.0	0.32	1.14	0.79	0.84	3.09	9437	1205	8	0	0	0	0	logfile
✔	8J8R	36078	2024-02-15	2023-05-02	2.9	3.08	2.99	3.1	0.004	0.64	0.0	0.04	15.50	0.00	2.199	6.24	2.26	4.0	96.0	0.0	0.97	0.73	0.82	3.14	3.1	0.003	0.57	0.0	0.04	16.16	0.00	2.168	6.96	4.39	4.3	95.7	0.0	0.56	0.28	0.74	0.83	2.91	13424	1733	12	0	0	0	0	logfile
✔	8oXP	17267	2024-02-24	2023-05-02	2.6	3.66	2.97	3.1	0.002	0.50	0.0	0.04	13.27	0.00	2.109	6.20	0.00	1.8	98.2	0.0	1.84	0.84	0.82	1.25	3.1	0.003	0.59	0.0	0.04	15.00	0.00	2.174	7.32	0.69	1.7	98.3	0.0	2.40	0.81	0.85	0.87	1.91	44460	5544	4	0	6	0	0	logfile
✔	8oXM	17265	2024-02-24	2023-05-02	3.3	3.96	3.58	3.6	0.002	0.50	0.0	0.04	14.09	0.00	2.097	8.21	0.00	2.1	97.9	0.0	2.04	0.78	0.77	0.86	3.6	0.002	0.64	0.0	0.04	16.09	0.00	1.973	11.65	1.04	2.4	97.6	0.0	1.80	2.33	0.81	0.84	1.15	44174	5510	6	0	6	0	0	logfile
✔	8oXQ	17268	2024-02-19	2023-05-02	2.5	3.51	2.59	3.1	0.003	0.44	0.0	0.04	13.91	0.00	2.094	5.38	0.00	1.6	98.4	0.0	2.91	0.81	0.87	2.58	3.2	0.005	0.62	0.0	0.04	15.89	0.00	2.104	8.00	1.47	2.1	97.9	0.0	2.78	1.40	0.82	0.89	2.71	25078	3100	4	0	6	0	0	logfile
✔	8oXo	17266	2024-02-19	2023-05-02	3.0	3.84	3.29	3.6	0.003	0.51	0.0	0.04	14.35	0.00	2.081	7.05	0.00	2.2	97.8	0.0	1.76	0.79	0.85	2.01	3.6	0.003	0.68	0.0	0.04	16.05	0.00	1.949	9.50	1.87	2.5	97.5	0.0	2.21	1.04	0.80	0.87	1.58	23986	2966	6	0	6	0	0	logfile
✔	8J8Z	36082	2024-02-14	2023-05-02	3.4	3.65	3.51	3.7	0.006	0.73	0.0	0.05	14.13	0.00	2.118	7.54	0.86	6.7	93.3	0.0	-0.49	0.78	0.81	3.58	3.7	0.003	0.63	0.0	0.04	15.23	0.00	2.227	8.93	2.69	4.5	95.5	0.0	0.21	0.40	0.78	0.81	2.31	8722	1142	8	0	0	0	0	logfile

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