Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W8P	21577	2024-02-13	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	14.92	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	4.0	0.004	0.78	0.0	0.04	18.26	0.00	2.179	13.76	9.17	9.9	90.1	0.0	-0.09	1.53	0.56	0.78	0.44	6509	844	4	0	3	0	0	logfile
✔	7BP8	30147	2024-02-22	2020-03-21	3.9	4.00	—	3.9	0.008	1.38	0.0	0.08	15.25	0.01	2.313	5.30	0.18	5.3	94.7	0.0	-3.18	0.80	0.80	1.59	3.9	0.004	0.70	0.0	0.05	16.21	0.00	2.150	13.05	2.72	3.7	96.3	0.0	-0.54	1.23	0.81	0.81	1.26	35190	4440	12	0	12	0	0	logfile
✔	6W8U	21578	2024-02-24	2020-03-21	3.8	4.14	—	4.0	0.004	0.54	0.0	0.05	12.25	0.00	2.062	10.63	0.48	4.4	95.6	0.0	-2.73	0.64	0.87	1.74	4.0	0.003	0.57	0.0	0.05	15.04	0.00	2.063	12.12	2.07	3.3	96.7	0.0	-0.61	1.14	0.65	0.86	1.27	41082	5740	41	0	0	0	0	logfile
✔	6W8X	21579	2024-02-21	2020-03-21	3.4	3.77	—	3.6	0.005	0.59	0.0	0.05	11.44	0.00	2.038	8.41	0.00	4.3	95.7	0.0	-2.19	0.59	0.86	2.04	3.6	0.003	0.69	0.0	0.05	13.46	0.00	2.072	7.91	0.91	2.4	97.6	0.0	-0.15	0.36	0.59	0.86	1.90	29766	4356	33	0	0	0	0	logfile
✔	7BP3	30143	2024-02-13	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.003	0.85	0.0	0.05	18.22	0.00	2.155	15.77	3.91	6.4	93.6	0.0	-0.10	1.25	0.50	0.75	0.86	6080	788	2	0	0	0	0	logfile
✔	7BP9	30148	2024-02-22	2020-03-21	3.6	3.66	—	3.6	0.009	1.26	0.0	0.08	14.69	0.01	2.215	9.40	0.47	5.0	94.8	0.1	-3.34	0.78	0.78	1.51	3.6	0.004	0.65	0.0	0.04	15.94	0.00	2.108	9.57	1.42	4.8	95.2	0.0	-0.72	0.64	0.79	0.79	1.29	35214	4440	12	0	12	0	0	logfile
✔	7BoY	30136	2024-02-23	2020-03-20	3.8	3.79	—	3.8	0.008	1.49	0.0	0.07	12.88	0.01	1.717	15.08	1.21	16.1	82.7	1.1	-5.15	0.84	0.83	2.69	3.7	0.004	0.96	0.0	0.05	15.76	0.00	2.056	20.53	2.55	16.9	82.9	0.3	-3.77	1.56	0.85	0.85	2.20	37794	4740	6	0	0	0	0	logfile
✔	7BP0	30138	2024-02-24	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	4.2	0.004	1.03	0.0	0.05	14.82	0.01	2.144	22.53	0.00	15.1	84.2	0.7	-3.03	1.39	0.60	0.68	—	41388	5244	12	0	0	0	0	logfile
✔	7BoZ	30137	2024-02-17	2020-03-20	3.8	3.72	—	3.7	0.010	1.85	0.0	0.08	13.23	0.01	2.141	11.02	1.32	13.1	85.3	1.5	-5.40	0.70	0.77	1.43	3.7	0.003	0.84	0.0	0.05	15.72	0.00	2.082	14.19	3.48	11.3	88.4	0.3	-2.91	2.15	0.71	0.81	2.03	18516	2328	18	0	0	0	0	logfile
✔	7BoX	30135	2024-02-17	2020-03-20	3.8	3.29	—	3.8	0.012	1.46	5.0	0.07	12.93	0.01	2.236	9.53	0.05	8.1	91.5	0.5	-4.94	0.78	0.81	2.90	3.7	0.003	0.73	0.0	0.04	17.24	0.00	2.167	12.11	3.68	7.3	92.7	0.0	-0.30	1.05	0.80	0.84	2.54	18618	2334	12	0	0	0	0	logfile
✔	6W8o	21576	2024-02-13	2020-03-20	3.4	4.30	—	4.1	0.029	1.20	3.0	0.05	17.62	0.01	1.161	20.04	11.79	6.7	93.3	0.0	-3.22	0.57	0.81	1.49	4.1	0.004	0.91	0.0	0.05	17.72	0.00	2.182	15.56	8.06	5.8	94.2	0.0	0.34	1.14	0.55	0.79	1.61	6332	832	2	0	0	0	0	logfile
✔	6W8N	21575	2024-02-13	2020-03-20	3.2	3.39	—	3.3	0.007	0.77	0.0	0.05	16.69	0.00	2.244	12.74	8.14	7.1	92.9	0.0	-2.74	0.61	0.85	1.84	3.3	0.003	0.64	0.0	0.04	16.90	0.00	2.262	8.81	7.09	5.2	94.8	0.0	0.60	0.90	0.60	0.86	2.27	6160	804	2	0	0	0	0	logfile
✔	7BoJ	30130	2024-02-16	2020-03-19	2.5	2.54	2.42	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.35	0.00	2.4	97.6	0.0	-2.48	0.77	0.86	4.26	2.5	0.005	0.67	0.0	0.05	15.79	0.00	2.130	7.83	2.13	2.1	97.9	0.0	1.69	1.86	0.78	0.88	4.27	121500	15900	60	0	0	0	0	logfile
✔	6W7M	21571	2024-02-25	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	23.74	0.00	2.031	14.77	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.005	0.86	0.0	0.05	24.36	0.01	1.997	28.91	4.43	13.1	86.7	0.3	-2.88	1.36	0.72	0.62	0.50	50694	2319	20	1512	0	0	0	logfile
✔	7BoU	30134	2024-02-25	2020-03-19	3.6	3.75	—	3.7	0.007	1.27	0.0	0.06	12.07	0.01	2.311	7.57	0.92	7.1	91.6	1.3	-5.82	0.79	0.82	2.04	3.7	0.003	0.82	0.0	0.04	16.37	0.00	2.130	14.74	3.21	8.6	91.2	0.2	-0.21	1.57	0.79	0.83	1.22	48708	6300	12	0	0	0	0	logfile
✔	7BoK	30131	2024-02-21	2020-03-19	3.7	3.80	3.93	3.7	0.009	0.92	0.0	0.05	14.40	0.01	2.036	8.66	0.00	4.6	95.4	0.0	-3.42	0.78	0.82	2.36	3.7	0.005	0.71	0.0	0.04	16.19	0.00	2.135	15.60	2.82	5.0	95.0	0.0	-0.50	1.28	0.79	0.84	2.42	29112	3708	24	0	12	0	0	logfile
✔	6W7W	21573	2024-02-20	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	23.62	0.00	2.156	10.70	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.005	0.73	0.0	0.04	23.78	0.00	2.082	22.89	4.69	7.6	92.4	0.0	-1.22	0.60	0.92	0.85	1.31	26883	1047	10	871	0	0	0	logfile
✔	6W7N	21572	2024-02-24	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	22.81	0.00	1.907	8.12	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.007	0.78	0.0	0.04	23.04	0.01	2.075	13.25	5.28	12.6	87.0	0.4	-2.52	1.26	0.81	0.83	1.34	42287	1660	15	1372	0	0	0	logfile
✔	6M7D	30129	2024-02-13	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	14.95	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.51	0.0	0.04	16.36	0.00	2.241	9.20	1.46	1.5	98.5	0.0	2.18	0.82	0.34	0.88	2.95	3280	412	2	6	0	0	0	logfile
✔	6YBW	10775	2024-02-25	2020-03-18	3.1	3.30	2.98	3.2	0.008	1.06	0.0	0.05	22.64	0.02	2.097	4.22	3.04	3.7	96.3	0.0	-2.06	0.74	0.87	3.02	3.2	0.003	0.67	0.0	0.04	22.48	0.01	1.929	8.34	3.92	2.7	97.3	0.0	-0.16	1.12	0.74	0.88	2.97	52840	3374	30	1248	61	0	0	logfile

• ← previous
• Page 458 of 588
• next →