Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YBW	10775	2024-02-25	2020-03-18	3.1	3.30	2.98	3.2	0.008	1.06	0.0	0.05	22.64	0.02	2.097	4.22	3.04	3.7	96.3	0.0	-2.06	0.74	0.87	3.02	3.2	0.003	0.67	0.0	0.04	22.48	0.01	1.929	8.34	3.92	2.7	97.3	0.0	-0.16	1.12	0.74	0.88	2.97	52840	3374	30	1248	61	0	0	logfile
✔	6M7D	30129	2024-02-13	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	14.95	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.51	0.0	0.04	16.36	0.00	2.241	9.20	1.46	1.5	98.5	0.0	2.18	0.82	0.34	0.88	2.95	3280	412	2	6	0	0	0	logfile
✔	6YBQ	10771	2024-02-22	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.03	0.01	1.550	5.79	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.70	0.0	0.05	15.85	0.00	2.125	5.50	0.70	2.5	97.5	0.0	0.14	0.45	0.85	0.90	6.02	34092	4289	36	0	12	871	0	logfile
✔	6YBV	10774	2024-02-13	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	21.44	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.005	0.89	0.0	0.05	21.94	0.01	2.023	22.46	4.00	12.6	87.3	0.1	-2.68	3.37	0.34	0.61	1.49	6731	769	5	78	0	0	0	logfile
✔	6YBP	10770	2024-02-23	2020-03-17	3.48	3.86	—	3.8	0.038	1.47	0.0	0.05	16.19	0.01	1.664	10.99	0.00	6.4	93.6	0.0	-2.69	0.74	0.85	2.36	3.8	0.007	0.70	0.0	0.05	16.35	0.00	2.126	8.88	2.79	5.9	94.1	0.0	-0.99	0.37	0.74	0.86	2.15	36410	4702	24	0	12	0	0	logfile
✔	6W6J	21557	2024-02-21	2020-03-17	3.2	3.50	—	3.4	0.007	0.89	0.0	0.05	15.85	0.01	1.459	11.27	0.82	12.4	87.5	0.2	-4.72	0.82	0.84	1.62	3.4	0.003	0.67	0.0	0.04	16.87	0.00	2.112	7.86	2.37	9.0	91.0	0.1	-1.06	1.28	0.84	0.88	1.53	29240	3725	13	0	38	0	0	logfile
✔	6W6K	21558	2024-02-24	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	23.24	0.00	2.113	10.37	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.005	0.79	2.0	0.04	23.88	0.01	1.861	18.44	5.10	11.2	88.8	0.0	-2.89	0.89	0.74	0.66	0.52	46934	1873	19	1534	1	0	0	logfile
✔	6W6M	21559	2024-02-13	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.73	2.71	2.8	0.004	0.75	0.0	0.05	14.40	0.01	2.149	6.26	3.56	5.7	94.3	0.0	-1.18	1.67	0.73	0.83	2.63	43638	5768	14	0	0	0	0	logfile
✔	6W6P	21562	2024-02-18	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	23.45	0.01	1.989	6.48	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.6	0.005	0.78	0.0	0.04	23.03	0.01	1.962	5.95	9.69	9.6	90.4	0.1	-1.99	1.15	0.79	0.86	2.72	133554	5058	51	4378	4	0	0	logfile
✔	6YBS	10772	2024-02-20	2020-03-17	3.1	3.28	3.00	3.2	0.007	0.98	0.0	0.06	21.20	0.01	2.044	3.59	2.92	5.3	94.7	0.0	-2.57	0.77	0.87	2.97	3.2	0.003	0.61	0.0	0.04	21.23	0.00	1.887	8.79	4.38	4.8	95.2	0.0	-0.61	0.37	0.77	0.88	2.65	28732	2330	21	501	30	0	0	logfile
✔	6W6o	21560	2024-02-14	2020-03-17	3.2	3.40	—	3.4	0.011	1.34	0.0	0.06	24.62	0.00	2.078	53.37	16.39	15.2	83.3	1.6	-4.85	0.63	0.75	1.80	3.4	0.004	0.83	0.0	0.04	20.27	0.00	2.163	13.01	5.36	6.2	93.8	0.0	-0.30	1.72	0.64	0.83	1.61	9180	1044	12	0	12	0	0	logfile
✔	6W6V	21564	2024-02-19	2020-03-17	3.0	3.67	—	3.6	0.004	0.63	0.0	0.04	18.07	0.00	2.092	6.70	0.05	10.9	89.1	0.0	-2.45	0.70	0.81	2.34	3.6	0.003	0.61	0.0	0.04	19.05	0.00	2.127	7.79	3.10	9.2	90.8	0.0	-1.33	0.69	0.68	0.81	1.99	24850	2306	11	294	0	0	0	logfile
✔	6W6W	21567	2024-02-16	2020-03-17	3.0	3.23	—	3.1	0.006	0.99	1.0	0.06	14.89	0.01	2.303	2.69	0.00	12.1	87.6	0.3	-5.09	0.64	0.84	3.49	3.1	0.003	0.74	0.0	0.04	16.42	0.00	2.211	7.57	1.93	10.0	89.7	0.2	-2.41	0.49	0.65	0.86	3.10	10981	1388	6	4	1	0	0	logfile
✔	6W6i	21556	2024-02-20	2020-03-17	3.5	3.77	—	3.6	0.007	0.86	0.0	0.05	15.80	0.00	1.813	12.00	0.85	13.2	86.7	0.2	-4.61	0.83	0.85	2.29	3.6	0.004	0.66	0.0	0.04	16.75	0.00	2.113	9.19	2.98	9.7	90.3	0.1	-1.42	0.52	0.82	0.85	1.72	28168	3580	13	0	38	0	0	logfile
✔	6YBD	10769	2024-02-21	2020-03-16	3.3	3.91	3.79	3.8	0.009	1.08	0.0	0.06	15.55	0.01	2.262	5.95	0.55	9.3	90.6	0.2	-4.02	0.51	0.72	1.56	3.9	0.003	0.69	0.0	0.04	16.64	0.00	2.162	11.19	3.32	6.8	93.2	0.0	-1.37	0.51	0.50	0.72	1.29	30742	4421	19	0	0	0	0	logfile
✔	6M71	30127	2024-02-14	2020-03-16	2.9	3.35	3.10	3.3	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.74	0.80	3.55	3.3	0.003	0.59	0.0	0.04	15.60	0.00	2.201	9.11	1.80	3.7	96.3	0.0	0.23	1.71	0.75	0.82	3.21	8614	1085	4	0	0	0	0	logfile
✔	6W6G	21554	2024-02-20	2020-03-16	3.1	3.46	—	3.3	0.006	0.79	0.0	0.05	15.96	0.00	2.131	10.22	0.66	11.5	88.3	0.2	-4.32	0.84	0.86	2.18	3.3	0.003	0.64	0.0	0.04	16.84	0.00	2.157	7.75	1.99	9.7	90.2	0.1	-1.27	2.22	0.82	0.87	1.94	27581	3506	13	0	38	0	0	logfile
✔	6W62	21551	2024-02-13	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	16.09	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.005	1.07	1.0	0.05	18.26	0.00	2.027	18.41	3.71	9.4	90.4	0.1	-1.58	1.19	0.72	0.68	0.77	7387	910	2	24	0	0	0	logfile
✔	6W6E	21553	2024-02-21	2020-03-16	3.7	3.92	—	3.7	0.008	0.86	0.0	0.05	14.90	0.01	1.067	10.67	0.53	10.6	89.2	0.2	-4.00	0.78	0.73	1.83	3.7	0.003	0.68	0.0	0.04	16.32	0.00	2.122	10.10	2.09	8.4	91.5	0.1	-1.03	1.29	0.85	0.85	1.60	30805	3932	14	0	38	0	0	logfile
✔	6W6H	21555	2024-02-20	2020-03-16	3.3	3.65	—	3.5	0.004	0.77	0.0	0.04	16.05	0.00	0.962	9.97	1.39	9.9	89.9	0.2	-4.10	0.84	0.85	2.13	3.5	0.003	0.64	0.0	0.04	17.04	0.00	2.183	8.33	2.61	9.1	90.9	0.0	-1.31	1.20	0.83	0.87	1.91	28427	3615	13	0	38	0	0	logfile

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