Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M6B	30118	2024-02-20	2020-03-14	4.1	4.19	—	4.1	0.007	0.95	0.0	0.06	16.97	0.01	2.133	12.35	0.38	5.5	94.5	0.0	-3.41	0.79	0.76	—	4.1	0.003	0.62	0.0	0.04	15.98	0.00	2.002	12.83	0.00	4.1	95.9	0.0	-0.65	1.50	0.84	0.81	—	28180	3417	10	56	4	0	0	logfile
✔	6M6C	30119	2024-02-19	2020-03-14	3.1	3.18	—	3.2	0.003	0.56	0.0	0.04	15.31	0.00	2.016	6.36	0.00	2.0	98.0	0.0	-1.51	0.56	0.67	2.05	3.2	0.003	0.53	0.0	0.04	16.86	0.00	1.937	5.57	1.75	1.9	98.1	0.0	0.98	0.51	0.80	0.87	2.21	24583	2958	9	59	3	0	0	logfile
✔	6W5V	21549	2024-02-17	2020-03-13	4.0	4.11	—	4.0	0.008	1.37	4.0	0.18	19.78	0.01	1.979	62.54	9.99	7.0	92.3	0.7	-2.21	0.63	0.75	—	4.0	0.003	0.86	0.0	0.05	16.39	0.01	2.186	14.17	3.42	6.5	93.5	0.0	-0.59	0.84	0.63	0.77	—	10586	1307	9	0	24	0	0	logfile
✔	6W5U	21548	2024-02-16	2020-03-13	3.9	3.97	—	3.9	0.011	1.52	4.0	0.16	20.44	0.01	1.741	63.51	6.82	8.5	90.5	1.0	-2.76	0.61	0.76	1.73	3.9	0.004	0.84	0.0	0.05	16.97	0.00	2.214	12.93	4.06	6.7	93.2	0.1	-0.22	1.74	0.62	0.78	1.46	9474	1175	6	0	21	0	0	logfile
✔	6M67	30115	2024-02-16	2020-03-13	3.6	3.14	—	4.0	0.006	1.14	0.0	0.06	14.95	0.01	2.247	6.79	0.00	10.3	89.7	0.0	-4.86	0.54	0.64	1.39	3.9	0.003	0.80	0.0	0.04	17.17	0.00	2.037	16.58	4.51	9.1	90.9	0.0	-1.28	0.76	0.54	0.64	1.05	14938	1855	7	0	0	0	0	logfile
✔	6W5R	21545	2024-02-16	2020-03-13	3.6	3.75	—	3.7	0.015	2.10	7.0	0.18	17.45	0.01	2.053	4.99	3.86	6.7	92.6	0.7	-3.31	0.61	0.75	2.23	3.7	0.005	1.05	1.0	0.05	15.48	0.00	2.069	8.72	3.29	6.2	93.6	0.2	-0.16	0.53	0.63	0.77	1.68	9629	1194	6	0	20	0	0	logfile
✔	6W5T	21547	2024-02-16	2020-03-13	3.7	3.75	—	3.7	0.007	1.14	2.0	0.18	19.77	0.01	2.054	48.42	5.60	8.0	91.5	0.5	-2.80	0.61	0.76	1.74	3.7	0.003	0.80	0.0	0.04	16.40	0.00	2.166	10.54	4.23	6.5	93.4	0.1	0.01	1.31	0.63	0.78	1.82	9505	1175	6	0	21	0	0	logfile
✔	6W5C	21541	2024-02-14	2020-03-13	2.9	2.92	—	3.2	0.004	0.64	0.0	0.04	18.52	0.00	2.103	8.53	0.85	7.4	92.4	0.2	-1.44	0.84	0.82	4.35	3.2	0.004	0.60	0.0	0.04	19.96	0.00	2.032	10.98	1.70	8.1	91.9	0.0	-0.25	2.18	0.83	0.83	3.75	10183	1023	5	105	0	0	0	logfile
✔	6W5S	21546	2024-02-16	2020-03-13	3.0	3.15	—	3.1	0.005	0.83	1.0	0.13	18.49	0.01	1.946	31.03	2.70	7.6	92.0	0.4	-3.24	0.67	0.81	2.46	3.1	0.003	0.72	0.0	0.04	15.89	0.00	2.182	7.03	1.83	6.3	93.4	0.3	0.17	0.50	0.67	0.85	2.53	9700	1194	6	0	21	0	0	logfile
✔	6M68	30116	2024-02-16	2020-03-13	4.6	5.04	—	4.8	0.005	1.00	0.0	0.06	14.61	0.01	2.175	5.67	0.00	10.0	90.0	0.0	-5.56	0.66	0.79	—	4.8	0.003	0.78	0.0	0.04	13.75	0.00	2.135	11.60	0.00	8.0	92.0	0.0	-1.26	1.53	0.65	0.76	—	14938	1855	7	0	0	0	0	logfile
✔	6W5M	21543	2024-02-22	2020-03-13	4.6	4.75	—	4.6	0.005	0.68	0.0	0.04	25.40	0.00	1.832	36.97	1.58	5.9	94.1	0.0	-2.98	0.80	0.75	—	4.6	0.004	0.69	0.0	0.04	24.73	0.01	2.068	20.65	0.07	4.4	95.6	0.0	-0.45	1.98	0.82	0.78	—	19574	1729	14	292	0	0	0	logfile
✔	6M66	30114	2024-02-16	2020-03-13	4.1	4.40	—	4.2	0.005	1.08	0.0	0.06	16.35	0.01	2.231	9.42	0.00	8.8	91.2	0.0	-5.00	0.64	0.75	—	4.2	0.004	0.81	0.0	0.05	14.79	0.01	2.195	17.63	0.00	9.7	90.3	0.0	-1.25	1.32	0.64	0.75	—	14938	1855	7	0	0	0	0	logfile
✔	6YAE	10747	2024-02-15	2020-03-12	3.9	4.10	4.00	4.1	0.009	0.82	0.0	0.05	14.19	0.00	2.093	17.68	0.13	9.3	90.5	0.2	-3.34	0.77	0.85	1.78	4.1	0.003	0.70	0.0	0.04	16.30	0.00	2.094	12.63	2.42	4.8	95.2	0.1	0.59	1.25	0.76	0.83	1.02	13707	1717	4	0	0	0	0	logfile
✔	6YAM	10761	2024-02-15	2020-03-12	3.6	3.47	—	3.5	0.021	2.06	55.0	0.12	20.11	0.02	0.634	17.64	3.01	10.8	85.2	4.0	-4.49	0.39	0.52	0.80	3.4	0.004	0.85	0.0	0.04	21.19	0.01	2.004	13.86	4.48	11.1	88.5	0.4	-2.37	1.57	0.46	0.65	1.11	118536	9811	51	1863	5	0	0	logfile
✔	6YAL	10760	2024-02-20	2020-03-12	3.0	3.10	—	3.1	0.022	2.10	46.0	0.12	20.97	0.02	0.805	11.97	2.62	10.0	86.1	3.9	-4.12	0.54	0.64	1.80	3.1	0.003	0.76	0.0	0.04	21.97	0.01	2.013	9.33	3.37	9.0	90.6	0.4	-2.02	1.49	0.64	0.83	1.90	90085	6322	42	1861	5	0	0	logfile
✔	6YAN	10762	2024-02-20	2020-03-12	3.48	3.56	—	3.5	0.018	2.03	24.0	0.13	21.69	0.02	0.554	3.68	1.68	9.0	87.4	3.6	-4.09	0.71	0.66	1.43	3.5	0.003	0.68	0.0	0.04	21.90	0.00	2.121	9.16	3.25	8.1	91.7	0.2	-1.56	1.83	0.81	0.84	1.68	84251	5610	39	1855	0	0	0	logfile
✔	6M5R	30090	2024-02-15	2020-03-11	3.5	3.68	—	3.6	0.005	0.77	2.0	0.05	15.65	0.00	2.015	11.54	5.29	9.2	90.7	0.1	-3.65	0.61	0.80	2.43	3.6	0.003	0.65	0.0	0.04	16.82	0.00	2.141	9.85	6.00	9.5	90.4	0.1	-1.15	0.60	0.60	0.81	2.60	11055	1440	4	0	2	0	0	logfile
✔	6W4S	21539	2024-02-13	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.10	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.003	0.61	0.0	0.04	15.43	0.00	2.213	8.90	2.41	3.1	96.9	0.0	1.72	0.45	0.57	0.84	2.23	4986	650	3	0	0	0	0	logfile
✔	6W4o	21535	2024-02-20	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.78	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.003	0.72	0.0	0.04	12.91	0.00	2.109	17.75	0.00	2.3	97.5	0.2	0.82	1.31	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	6M5S	30091	2024-02-15	2020-03-11	3.9	3.99	—	3.9	0.005	0.77	2.0	0.05	15.65	0.00	2.015	11.35	5.29	9.2	90.6	0.1	-3.65	0.59	0.68	1.57	3.9	0.003	0.73	0.0	0.04	16.48	0.00	2.171	14.73	3.53	8.9	91.0	0.1	-0.87	0.99	0.62	0.76	1.67	11055	1440	4	0	2	0	0	logfile

• ← previous
• Page 460 of 588
• next →