Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W4S	21539	2024-02-13	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.10	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.003	0.61	0.0	0.04	15.43	0.00	2.213	8.90	2.41	3.1	96.9	0.0	1.72	0.45	0.57	0.84	2.23	4986	650	3	0	0	0	0	logfile
✔	6M5G	30085	2024-02-17	2020-03-10	3.6	3.74	—	3.6	0.010	0.82	0.0	0.05	13.87	0.00	1.951	11.79	9.29	9.4	90.4	0.2	-3.64	0.74	0.90	1.98	3.6	0.003	0.61	0.0	0.04	15.10	0.00	1.988	9.41	4.01	4.6	95.3	0.0	-0.89	1.45	0.73	0.89	1.70	17363	2204	13	0	10	0	0	logfile
✔	6Y9X	10740	2024-02-17	2020-03-10	4.4	4.70	4.26	4.4	0.012	1.07	3.0	0.11	13.05	0.01	1.344	12.07	0.45	2.0	98.0	0.0	-0.96	0.69	0.74	—	4.4	0.004	0.80	0.0	0.05	13.47	0.00	2.041	20.90	0.00	3.1	96.9	0.0	0.13	1.37	0.73	0.79	—	18418	2364	13	0	0	0	0	logfile
✔	6Y9W	10739	2024-02-17	2020-03-10	4.1	4.30	4.03	4.1	0.012	1.07	3.0	0.11	13.05	0.01	1.911	10.71	0.45	2.0	98.0	0.0	-0.96	0.72	0.77	—	4.1	0.003	0.78	0.0	0.05	13.74	0.01	2.066	15.66	0.00	2.6	97.4	0.0	0.10	3.44	0.76	0.82	—	18418	2364	13	0	0	0	0	logfile
✔	6Y9Z	10742	2024-02-17	2020-03-10	4.8	5.22	4.55	6.0	0.012	1.07	3.0	0.11	13.05	0.01	1.631	10.65	0.45	1.9	98.0	0.0	-0.96	0.71	0.75	—	4.9	0.003	0.80	0.0	0.05	13.10	0.01	2.073	19.30	0.05	3.6	96.4	0.0	-0.31	3.64	0.74	0.81	—	18418	2364	13	0	0	0	0	logfile
✔	6M54	30084	2024-02-22	2020-03-09	2.4	2.57	—	2.5	0.012	1.15	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.63	0.0	0.04	16.56	0.00	2.531	0.51	1.30	4.1	95.9	0.0	3.51	0.27	0.81	0.91	3.76	33382	4104	38	0	6	8	0	logfile
✔	6M52	30083	2024-02-22	2020-03-09	2.6	2.82	—	2.8	0.009	0.94	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.004	0.60	0.0	0.04	17.49	0.00	2.343	0.97	1.75	4.0	96.0	0.0	3.39	0.28	0.79	0.91	2.41	33382	4104	38	0	6	8	0	logfile
✔	6W2T	21530	2024-02-13	2020-03-08	3.36	3.35	3.39	3.3	0.012	1.53	3.0	0.09	22.11	0.00	1.933	5.07	1.45	11.4	87.1	1.5	-4.58	0.68	0.73	1.93	3.3	0.003	0.70	1.0	0.04	22.16	0.00	1.717	12.09	2.96	8.4	91.5	0.1	-1.44	1.20	0.77	0.78	1.50	109778	8254	46	2036	2	0	0	logfile
✔	6W2Y	21534	2024-02-14	2020-03-08	3.2	3.42	—	3.4	0.007	0.73	0.0	0.06	14.89	0.00	2.193	10.12	0.12	8.3	91.7	0.0	-3.95	0.67	0.78	2.98	3.5	0.003	0.65	0.0	0.04	14.80	0.00	2.221	8.51	2.75	3.4	96.6	0.0	-0.04	0.53	0.64	0.79	2.69	9721	1327	6	0	14	0	0	logfile
✔	6M4o	30080	2024-02-14	2020-03-08	3.4	3.64	—	3.6	0.007	1.14	0.0	0.06	11.53	0.01	2.203	4.58	1.15	11.4	88.4	0.2	-5.81	0.66	0.81	3.38	3.6	0.003	0.71	0.0	0.04	15.56	0.00	2.174	10.00	3.87	9.3	90.7	0.0	-1.85	1.74	0.68	0.83	2.30	8918	1127	6	0	1	0	0	logfile
✔	6W2X	21533	2024-02-14	2020-03-08	3.6	3.76	—	3.7	0.005	0.75	0.0	0.05	13.84	0.00	2.034	5.55	0.00	7.1	92.9	0.0	-3.47	0.71	0.76	2.41	3.7	0.004	0.66	0.0	0.04	14.91	0.00	2.157	3.70	2.19	5.2	94.8	0.0	-0.78	0.97	0.73	0.81	2.20	9860	1345	6	0	10	0	0	logfile
✔	6M4H	30078	2024-02-14	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.22	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	3.9	0.005	0.75	0.0	0.04	29.70	0.01	2.110	18.03	3.38	3.8	96.2	0.0	1.03	1.75	0.87	0.84	1.03	9420	656	10	206	0	0	0	logfile
✔	6M4N	30079	2024-02-17	2020-03-07	3.8	4.04	—	3.8	0.009	1.17	0.0	0.06	11.94	0.01	2.164	7.82	0.73	10.9	88.9	0.2	-4.50	0.70	0.81	1.34	3.8	0.003	0.80	0.0	0.05	14.49	0.00	2.108	14.83	1.99	8.6	91.3	0.1	-0.86	1.41	0.71	0.82	1.27	17836	2254	10	0	2	0	0	logfile
✔	6Y9A	10734	2024-02-13	2020-03-06	4.2	5.61	—	5.7	0.004	0.81	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.44	—	5.6	0.003	0.70	0.0	0.04	13.61	0.01	2.157	14.42	0.00	4.8	95.2	0.0	0.30	1.37	0.55	0.65	—	5948	776	4	0	0	0	0	logfile
✔	6Y97	10733	2024-02-13	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.73	0.0	0.04	13.53	0.00	2.066	17.64	0.00	6.5	93.5	0.0	0.49	1.22	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6M4D	30076	2024-02-14	2020-03-06	4.4	4.58	—	4.3	0.007	0.84	0.0	0.05	31.37	0.01	2.074	25.84	0.71	6.6	92.8	0.6	-2.81	0.88	0.82	—	4.3	0.004	0.70	0.0	0.04	30.27	0.01	2.169	20.29	0.00	2.4	97.0	0.6	0.68	1.44	0.88	0.82	—	10497	682	10	250	0	0	0	logfile
✔	6Y90	10731	2024-02-14	2020-03-06	3.69	4.05	—	4.0	0.007	0.90	0.0	0.07	14.80	0.00	2.268	7.74	0.19	2.8	97.2	0.0	0.18	0.59	0.76	1.32	4.0	0.003	0.67	0.0	0.04	15.64	0.00	2.159	12.30	2.02	4.6	95.4	0.0	-0.29	0.98	0.59	0.80	1.82	9778	1218	8	0	20	0	0	logfile
✔	6M4G	30077	2024-02-14	2020-03-06	2.8	3.16	—	3.1	0.006	0.93	0.0	0.06	25.70	0.01	2.169	14.42	2.14	2.8	97.2	0.0	-6.14	0.60	0.74	3.05	3.1	0.004	0.66	0.0	0.04	28.06	0.00	2.300	10.00	3.02	1.7	98.3	0.0	1.24	1.27	0.62	0.81	2.64	9010	656	10	186	0	0	0	logfile
✔	6Y92	10732	2024-02-16	2020-03-06	4.73	5.03	—	4.9	0.006	0.77	0.0	0.06	14.34	0.00	2.265	7.43	0.77	3.7	96.3	0.0	-0.68	0.59	0.71	—	4.9	0.003	0.70	0.0	0.04	13.27	0.00	2.188	10.59	0.00	5.9	94.1	0.0	-1.35	0.65	0.61	0.77	—	9497	1210	8	0	6	0	0	logfile
✔	6M49	30074	2024-02-13	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.05	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	15.91	0.00	2.219	7.32	5.25	2.9	97.1	0.0	1.86	3.59	0.48	0.73	1.18	3098	420	3	0	1	0	0	logfile

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