Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W2D	21525	2024-02-18	2020-03-05	4.0	4.10	—	4.0	0.006	0.74	0.0	0.05	13.33	0.01	1.362	15.60	5.51	5.0	94.6	0.4	-2.57	0.34	0.54	—	4.0	0.004	0.82	0.0	0.05	17.27	0.01	2.014	16.54	5.55	6.8	93.2	0.1	-1.28	1.71	0.42	0.79	—	74272	9430	21	0	0	0	0	logfile
✔	6W2E	21526	2024-02-14	2020-03-05	4.4	4.45	—	4.4	0.006	1.04	1.0	0.06	10.30	0.01	1.618	7.99	0.68	4.5	95.1	0.4	-2.37	0.33	0.53	—	4.4	0.005	0.85	0.0	0.05	13.58	0.01	2.055	18.22	0.04	7.9	92.0	0.1	-1.39	1.39	0.40	0.76	—	62525	7943	19	0	0	0	0	logfile
✔	6W1X	21516	2024-02-18	2020-03-04	3.9	4.01	—	3.9	0.011	0.99	0.0	0.08	11.59	0.01	1.879	4.63	0.06	0.3	99.7	0.0	-0.99	0.75	0.72	0.89	3.9	0.005	0.88	1.0	0.04	16.63	0.00	1.921	16.14	4.70	6.2	93.8	0.0	-0.75	1.58	0.81	0.82	1.83	21735	2874	12	60	0	0	0	logfile
✔	6W1J	21511	2024-02-16	2020-03-04	2.92	3.34	2.83	3.2	0.010	1.17	0.0	0.10	13.56	0.01	2.337	2.46	0.82	5.6	94.4	0.0	-5.20	0.76	0.88	4.98	3.2	0.003	0.67	0.0	0.04	13.28	0.00	2.264	5.36	2.40	4.1	95.9	0.0	-0.53	1.02	0.75	0.89	3.47	16861	1965	25	0	41	0	0	logfile
✔	6W1Y	21518	2024-02-16	2020-03-04	3.35	3.94	3.27	3.8	0.017	1.32	0.0	0.31	15.16	0.01	2.330	2.67	0.82	5.4	94.6	0.0	-5.17	0.77	0.87	3.89	3.8	0.003	0.95	0.0	0.12	14.27	0.00	2.100	4.74	2.80	2.7	97.3	0.0	-0.02	1.35	0.77	0.87	3.05	16845	1970	25	0	40	0	0	logfile
✔	6W1N	21513	2024-02-13	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.50	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.76	0.0	0.04	14.18	0.00	2.112	12.42	2.20	3.1	96.9	0.0	0.78	0.75	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	6M3X	30073	2024-02-14	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.004	0.67	0.0	0.05	16.86	0.00	2.292	5.62	1.87	3.3	96.7	0.0	0.17	0.42	0.79	0.91	6.48	62387	7440	72	0	24	2243	0	logfile
✔	6W1S	21514	2024-02-24	2020-03-04	4.02	4.48	—	4.1	0.008	0.79	0.0	0.04	12.39	0.00	1.330	9.41	0.03	13.4	86.4	0.2	-3.32	0.81	0.74	—	4.1	0.003	0.70	0.0	0.04	12.17	0.00	2.095	10.69	0.00	14.3	85.7	0.1	-0.98	0.53	0.81	0.75	—	47275	6862	25	0	567	0	0	logfile
✔	6M3W	30072	2024-02-14	2020-03-04	3.9	4.04	—	3.9	0.011	1.31	0.0	0.08	20.56	0.01	2.264	9.72	0.66	11.1	88.9	0.0	-4.25	0.82	0.78	1.15	3.9	0.004	0.79	0.0	0.05	16.05	0.00	2.157	18.35	3.99	8.2	91.8	0.0	-1.82	1.68	0.82	0.79	0.70	8307	1032	6	0	24	0	0	logfile
✔	6W1M	21512	2024-02-16	2020-03-04	3.06	3.62	3.00	3.4	0.010	1.27	0.0	0.17	14.39	0.01	2.309	3.22	0.27	5.4	94.6	0.0	-5.48	0.76	0.88	3.82	3.4	0.003	0.70	0.0	0.05	13.07	0.00	2.156	6.45	2.23	3.1	96.9	0.0	-0.30	1.10	0.75	0.87	2.84	16885	1970	25	0	40	0	0	logfile
✔	6M39	30071	2024-02-18	2020-03-03	3.55	3.63	—	3.6	0.010	1.26	0.0	0.07	13.06	0.01	2.271	7.44	1.23	9.7	90.3	0.0	-4.52	0.73	0.80	2.70	3.6	0.005	0.91	1.0	0.05	14.24	0.00	1.919	17.22	5.95	9.3	90.7	0.0	-2.30	1.66	0.74	0.82	2.13	22716	2811	6	0	54	0	0	logfile
✔	6W18	21503	2024-02-15	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.72	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.004	0.73	0.0	0.05	13.04	0.00	2.096	11.00	0.09	10.2	89.8	0.0	-1.44	1.31	0.77	0.72	—	13151	1837	9	0	3	0	0	logfile
✔	6M2W	30067	2024-02-16	2020-03-01	3.8	2.59	3.89	2.6	0.006	1.08	0.0	0.05	15.67	0.01	2.276	3.96	3.59	3.1	96.9	0.0	-5.38	0.77	0.64	0.21	2.1	0.003	0.62	0.0	0.04	15.64	0.00	2.111	9.14	2.31	2.4	97.6	0.0	0.27	1.82	0.83	0.80	1.94	120452	14972	16	0	1828	0	0	logfile
✔	6Y7C	10713	2024-02-19	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	23.26	0.02	0.193	10.34	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.012	0.95	0.0	0.04	23.32	0.01	1.951	38.34	2.47	15.7	84.1	0.1	-3.80	2.59	0.92	0.79	0.32	79690	5381	34	1735	0	0	0	logfile
✔	6VYL	21463	2024-02-15	2020-02-27	3.4	3.43	—	3.4	0.008	0.85	0.0	0.05	14.42	0.01	2.293	4.68	0.48	5.1	94.9	0.0	-4.60	0.72	0.84	2.99	3.4	0.003	0.53	0.0	0.04	15.80	0.00	2.176	8.28	1.79	3.4	96.6	0.0	0.01	0.51	0.67	0.83	3.09	13671	1792	7	0	0	0	0	logfile
✔	6VYK	21462	2024-02-16	2020-02-27	3.2	3.31	—	3.3	0.010	1.74	0.0	0.07	15.96	0.00	2.122	3.09	0.00	4.5	95.5	0.0	-3.22	0.72	0.81	3.40	3.3	0.003	1.19	0.0	0.04	15.41	0.00	2.164	8.03	1.39	2.7	97.3	0.0	-0.11	2.52	0.71	0.85	3.42	14623	1869	12	0	7	0	0	logfile
✔	6Y6X	10709	2024-02-21	2020-02-27	2.8	2.76	—	2.7	0.007	1.01	0.0	0.07	24.05	0.01	1.914	4.55	0.96	7.0	92.7	0.3	-2.80	0.80	0.87	3.06	2.7	0.007	0.74	0.0	0.05	23.83	0.01	1.794	9.77	2.87	6.9	93.1	0.1	-0.40	1.16	0.82	0.91	3.05	140969	6788	60	4049	235	0	0	logfile
✔	6VYM	21464	2024-02-15	2020-02-27	3.7	3.94	—	3.9	0.006	0.88	0.0	0.06	14.09	0.01	2.339	6.48	0.00	7.1	92.9	0.0	-4.56	0.76	0.82	2.15	3.9	0.003	0.70	0.0	0.05	16.12	0.00	2.206	12.23	3.74	6.1	93.9	0.0	-0.33	1.18	0.74	0.82	2.00	13573	1778	7	0	0	0	0	logfile
✔	6VZ8	21487	2024-02-24	2020-02-27	3.45	3.81	—	3.8	0.011	1.54	1.0	0.08	13.40	0.02	1.913	3.71	0.61	3.3	96.5	0.2	-1.89	0.72	0.71	1.81	3.8	0.003	0.65	0.0	0.04	15.55	0.00	1.989	7.25	2.48	2.4	97.6	0.0	0.03	1.42	0.79	0.82	1.71	42132	5568	32	0	24	0	0	logfile
✔	6M22	30058	2024-02-16	2020-02-26	2.7	2.86	—	2.8	0.009	1.05	0.0	0.06	14.67	0.01	1.962	4.54	1.22	7.5	91.7	0.8	-5.21	0.74	0.84	3.10	2.8	0.003	0.62	0.0	0.04	15.32	0.00	2.229	3.97	2.03	7.7	92.2	0.1	0.52	0.62	0.72	0.88	2.65	14028	1770	12	0	24	40	0	logfile

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