Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M22	30058	2024-02-16	2020-02-26	2.7	2.86	—	2.8	0.009	1.05	0.0	0.06	14.67	0.01	1.962	4.54	1.22	7.5	91.7	0.8	-5.21	0.74	0.84	3.10	2.8	0.003	0.62	0.0	0.04	15.32	0.00	2.229	3.97	2.03	7.7	92.2	0.1	0.52	0.62	0.72	0.88	2.65	14028	1770	12	0	24	40	0	logfile
✔	6Y6K	10706	2024-02-14	2020-02-26	3.78	3.86	—	3.8	0.012	0.99	1.0	0.06	16.00	0.01	1.889	11.41	2.36	12.5	87.4	0.2	-5.70	0.75	0.88	2.58	3.8	0.005	0.67	0.0	0.04	17.00	0.00	1.933	4.64	3.06	6.7	93.3	0.0	-2.90	1.00	0.77	0.87	2.16	10351	1299	1	0	1	0	0	logfile
✔	6M1H	30047	2024-02-14	2020-02-26	3.6	3.71	—	3.6	0.007	0.96	0.0	0.06	15.34	0.01	1.782	9.47	0.21	6.1	93.9	0.0	-4.70	0.82	0.79	1.90	3.6	0.003	0.69	0.0	0.04	16.64	0.00	2.165	13.56	2.88	5.1	94.9	0.0	-1.66	1.69	0.81	0.79	1.36	9036	1139	6	0	0	0	0	logfile
✔	6M23	30061	2024-02-16	2020-02-26	3.2	3.49	—	3.3	0.010	1.12	0.0	0.07	14.89	0.01	2.216	8.07	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.4	0.003	0.76	0.0	0.04	15.59	0.00	2.147	8.72	2.70	10.1	89.4	0.4	-1.58	0.77	0.67	0.83	2.20	14744	1872	12	0	18	2	0	logfile
✔	6VYG	21459	2024-02-15	2020-02-26	3.5	3.58	—	3.5	0.004	0.69	0.0	0.04	14.05	0.00	2.094	7.99	0.54	9.2	90.8	0.0	-3.60	0.73	0.84	3.44	3.5	0.005	0.72	3.0	0.05	16.34	0.00	2.204	8.51	1.96	9.1	90.9	0.0	-1.05	0.40	0.72	0.85	2.70	13616	1732	4	0	0	0	0	logfile
✔	6VYF	21458	2024-02-15	2020-02-26	3.3	3.38	—	3.3	0.005	0.68	0.0	0.04	13.96	0.00	2.223	8.29	0.27	8.7	91.3	0.0	-3.53	0.73	0.87	2.78	3.3	0.004	0.58	0.0	0.04	15.77	0.00	2.143	9.44	4.30	9.4	90.6	0.0	-1.10	0.90	0.73	0.88	2.75	13624	1728	4	0	0	0	0	logfile
✔	6VYi	21461	2024-02-13	2020-02-26	3.0	3.28	—	3.2	0.010	0.94	0.0	0.05	19.28	0.00	2.157	10.66	0.00	11.2	88.8	0.0	-2.99	0.66	0.87	2.91	3.2	0.005	1.29	2.0	0.04	18.49	0.00	2.240	10.30	1.26	6.8	93.2	0.0	0.89	0.59	0.62	0.88	1.94	6916	812	4	0	4	0	0	logfile
✔	6M1i	30048	2024-02-14	2020-02-26	3.5	3.33	—	3.2	0.008	0.97	0.0	0.06	15.40	0.01	2.210	8.41	0.32	7.1	92.9	0.0	-4.80	0.83	0.80	1.81	3.2	0.004	0.68	0.0	0.04	16.62	0.00	2.121	14.08	4.10	6.4	93.6	0.0	-1.19	1.30	0.82	0.80	1.23	8916	1126	6	0	0	0	0	logfile
✔	6Y59	10691	2024-02-21	2020-02-25	3.2	4.61	3.12	3.4	0.008	0.94	0.0	0.05	12.32	0.01	2.376	3.45	0.00	1.2	98.8	0.0	-3.39	0.92	0.84	2.09	3.4	0.003	0.53	0.0	0.04	13.58	0.00	2.175	10.09	1.28	2.7	97.3	0.0	0.50	1.18	0.93	0.87	2.30	31910	1915	5	0	0	0	16045	logfile
✔	6Y5V	10704	2024-02-15	2020-02-25	4.08	4.18	4.07	4.2	0.004	0.68	0.0	0.05	12.75	0.00	2.232	7.39	0.29	4.0	96.0	0.0	-2.25	0.65	0.84	—	4.1	0.003	0.65	0.0	0.04	12.38	0.00	2.143	10.79	0.07	3.9	96.1	0.0	1.04	2.45	0.65	0.83	—	13400	1758	6	0	8	0	0	logfile
✔	6Y5E	10695	2024-02-16	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.71	0.01	2.429	0.83	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.006	1.01	2.0	0.04	26.00	0.00	1.834	7.71	1.67	1.5	98.4	0.1	1.98	0.62	0.84	0.85	2.56	15292	1120	18	306	9	0	0	logfile
✔	6Y5D	10694	2024-02-21	2020-02-25	4.1	5.00	—	4.0	0.013	1.23	0.0	0.07	25.76	0.01	2.251	1.31	0.11	2.0	97.9	0.1	0.59	0.86	0.76	—	4.0	0.004	0.64	0.0	0.04	26.11	0.00	1.929	10.71	0.00	2.6	97.4	0.0	0.79	1.26	0.88	0.82	—	30372	2218	31	612	11	0	0	logfile
✔	6VYB	21457	2024-02-18	2020-02-25	3.2	3.72	—	3.6	0.015	1.38	1.0	0.10	10.14	0.01	2.299	0.53	0.13	2.4	97.5	0.1	0.50	0.77	0.78	2.94	3.6	0.003	0.56	0.0	0.04	12.73	0.00	2.207	5.77	1.55	2.6	97.4	0.0	0.61	0.63	0.75	0.79	2.85	22365	2875	18	0	59	0	0	logfile
✔	6VXX	21452	2024-02-19	2020-02-25	2.8	3.32	—	3.2	0.016	1.36	0.0	0.10	10.40	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.73	0.75	3.36	3.2	0.005	0.68	0.0	0.05	13.81	0.00	2.167	7.55	2.43	3.8	96.2	0.0	-0.08	1.63	0.68	0.77	2.98	23694	2916	21	0	63	0	0	logfile
✔	6M18	30040	2024-02-18	2020-02-25	2.9	3.12	—	3.0	0.007	1.04	2.0	0.07	15.27	0.01	2.060	10.56	3.28	7.7	91.2	1.1	-5.88	0.68	0.73	3.22	3.0	0.003	0.68	0.0	0.04	15.39	0.00	2.050	6.37	1.51	6.4	93.5	0.1	-0.16	1.26	0.76	0.87	2.53	22534	2708	26	0	44	30	0	logfile
✔	6VXZ	21453	2024-02-15	2020-02-25	3.42	3.56	3.37	3.6	0.011	1.06	0.0	0.06	23.66	0.01	1.959	12.61	2.40	8.1	91.9	0.0	-3.97	0.71	0.81	1.86	3.5	0.003	0.71	0.0	0.04	18.27	0.00	2.183	8.32	2.10	4.7	95.3	0.0	1.24	0.53	0.70	0.85	1.05	13324	1556	8	0	28	0	0	logfile
✔	6Y5B	10693	2024-02-21	2020-02-25	3.1	4.45	2.96	3.0	0.006	0.87	0.0	0.05	13.31	0.01	2.010	5.44	0.00	1.9	98.1	0.0	-3.11	0.93	0.85	2.13	3.0	0.002	0.53	0.0	0.04	14.13	0.00	2.106	6.52	0.74	1.7	98.3	0.0	0.46	1.10	0.94	0.87	2.41	31429	1887	5	0	0	0	15794	logfile
✔	6Y5G	10696	2024-02-15	2020-02-25	3.0	3.07	3.02	3.0	0.005	0.66	0.0	0.10	15.74	0.00	2.189	3.69	0.94	4.6	95.4	0.0	-2.94	0.73	0.84	4.03	3.0	0.002	0.62	0.0	0.05	15.69	0.00	2.197	3.73	2.73	3.8	96.2	0.0	-0.62	1.18	0.73	0.86	3.95	12036	1470	18	0	36	0	0	logfile
✔	6Y5L	10701	2024-02-13	2020-02-25	3.6	3.66	2.91	3.6	0.004	0.70	0.0	0.05	14.31	0.01	2.161	5.91	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.004	1.04	0.0	0.05	18.29	0.01	2.165	22.18	4.37	7.6	92.4	0.0	0.27	0.98	0.70	0.75	1.35	3855	477	9	0	3	0	0	logfile
✔	6Y5K	10700	2024-02-15	2020-02-25	4.2	4.47	4.20	4.2	0.004	0.76	0.0	0.05	13.06	0.00	2.096	10.42	0.00	2.6	97.4	0.0	-1.98	0.86	0.76	—	4.2	0.003	0.68	0.0	0.04	12.85	0.00	2.111	15.78	0.00	2.8	97.2	0.0	-0.01	0.98	0.87	0.78	—	10614	1335	9	0	6	0	0	logfile

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