Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y5B	10693	2024-02-21	2020-02-25	3.1	4.45	2.96	3.0	0.006	0.87	0.0	0.05	13.31	0.01	2.010	5.44	0.00	1.9	98.1	0.0	-3.11	0.93	0.85	2.13	3.0	0.002	0.53	0.0	0.04	14.13	0.00	2.106	6.52	0.74	1.7	98.3	0.0	0.46	1.10	0.94	0.87	2.41	31429	1887	5	0	0	0	15794	logfile
✔	6Y50	10688	2024-02-16	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	11.03	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.003	0.63	0.0	0.04	12.34	0.00	2.049	7.08	0.00	9.7	90.2	0.1	-1.33	0.55	0.72	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6M15	30037	2024-02-19	2020-02-24	2.38	2.44	—	2.4	0.009	1.05	0.0	0.07	13.41	0.01	2.141	3.81	0.12	3.0	97.0	0.0	-2.43	0.80	0.87	5.62	2.4	0.004	0.84	1.0	0.05	13.75	0.00	1.785	4.33	1.24	2.3	97.7	0.0	0.60	0.46	0.81	0.89	4.46	23471	2895	30	0	72	71	0	logfile
✔	6M16	30038	2024-02-19	2020-02-24	2.83	2.92	—	2.9	0.011	1.07	0.0	0.07	12.54	0.01	1.146	5.17	0.36	7.5	92.4	0.1	-4.10	0.79	0.85	3.94	2.9	0.008	0.80	0.0	0.05	13.22	0.01	2.213	7.21	2.20	6.9	93.1	0.0	-1.28	1.17	0.80	0.88	3.18	23433	2895	18	0	60	0	0	logfile
✔	6M17	30039	2024-02-19	2020-02-24	2.9	3.18	—	3.2	0.008	1.05	4.0	0.08	15.89	0.01	1.932	16.42	5.25	9.5	88.8	1.7	-5.89	0.57	0.62	2.20	3.2	0.004	0.75	0.0	0.05	16.51	0.00	1.952	8.68	2.48	5.4	94.3	0.3	-0.60	0.81	0.68	0.84	2.10	25344	3074	28	0	46	8	0	logfile
✔	6VXo	21446	2024-02-13	2020-02-22	3.5	3.81	—	3.8	0.012	1.40	0.0	0.05	24.97	0.00	2.125	14.64	21.57	12.2	87.4	0.4	-3.90	0.63	0.83	0.88	3.8	0.003	0.72	0.0	0.04	19.26	0.00	2.113	8.21	7.97	10.2	89.8	0.0	-0.09	0.66	0.61	0.81	0.53	8048	904	8	0	12	0	0	logfile
✔	6M0R	30034	2024-02-25	2020-02-22	2.7	2.84	—	2.9	0.011	0.95	0.0	0.05	20.88	0.01	2.036	1.27	0.00	1.4	98.6	0.0	-4.42	0.68	0.72	1.37	2.8	0.005	0.64	0.0	0.04	17.97	0.00	1.878	4.99	1.79	2.1	97.9	0.0	-0.80	2.04	0.75	0.84	2.98	46354	2915	43	0	37	184	22687	logfile
✔	6VXK	21442	2024-02-17	2020-02-22	3.1	3.57	—	3.2	0.011	0.84	0.0	0.05	14.81	0.00	2.122	15.37	8.05	10.5	89.5	0.0	-3.69	0.86	0.88	3.00	3.2	0.003	0.60	0.0	0.05	14.55	0.00	2.193	9.45	3.83	6.6	93.4	0.0	-1.57	0.93	0.86	0.88	2.52	17418	2254	8	0	18	0	0	logfile
✔	6VXN	21445	2024-02-16	2020-02-22	2.96	3.62	—	3.4	0.013	1.07	0.0	0.06	15.68	0.01	2.332	5.68	0.00	1.6	98.4	0.0	-3.41	0.75	0.82	3.10	3.3	0.003	0.70	0.0	0.04	16.16	0.00	2.219	7.15	1.15	3.5	96.5	0.0	0.84	1.29	0.70	0.82	3.13	14385	1862	12	0	7	0	0	logfile
✔	6VXJ	21440	2024-02-14	2020-02-22	4.1	4.12	—	4.1	0.007	1.02	0.0	0.05	16.52	0.01	2.251	6.79	3.32	9.5	90.5	0.0	-5.74	0.57	0.78	—	4.1	0.004	0.74	0.0	0.04	13.55	0.00	2.154	12.52	0.00	9.0	91.0	0.0	-1.67	0.71	0.57	0.79	—	8895	1132	4	0	3	0	0	logfile
✔	6VXM	21444	2024-02-16	2020-02-22	3.06	3.76	—	3.4	0.018	1.02	0.0	0.05	12.84	0.00	2.208	5.67	0.00	3.9	96.1	0.0	-2.02	0.75	0.81	2.38	3.4	0.003	0.48	0.0	0.04	13.16	0.00	2.287	4.14	1.18	2.5	97.5	0.0	2.03	1.19	0.72	0.85	2.46	15064	1939	14	0	21	0	0	logfile
✔	6VXP	21447	2024-02-16	2020-02-22	3.39	4.13	—	3.9	0.008	1.13	14.0	0.07	11.36	0.01	2.226	6.82	0.00	4.1	95.9	0.0	-2.30	0.74	0.80	2.28	3.8	0.007	0.77	0.0	0.04	13.64	0.00	2.264	6.72	1.98	2.7	97.3	0.0	2.52	1.77	0.75	0.85	2.24	14819	1939	7	0	0	0	0	logfile
✔	6M0S	30035	2024-02-24	2020-02-22	3.6	3.77	—	3.7	0.004	0.65	0.0	0.04	8.18	0.00	2.205	1.30	0.00	1.9	98.1	0.0	-4.94	0.71	0.74	1.42	3.7	0.002	0.57	0.0	0.04	14.44	0.00	2.071	4.93	1.16	2.2	97.8	0.0	-0.16	1.31	0.76	0.81	1.53	44660	2909	15	0	0	0	22618	logfile
✔	6VXF	21436	2024-02-14	2020-02-21	3.5	3.42	—	3.4	0.009	1.04	0.0	0.06	15.36	0.01	2.255	4.68	1.25	7.7	92.1	0.2	-4.65	0.63	0.81	2.40	3.4	0.004	0.65	0.0	0.04	16.64	0.00	2.221	11.17	2.60	6.5	93.4	0.2	-0.36	1.24	0.63	0.81	2.24	8786	1130	2	0	0	0	0	logfile
✔	6VX4	21429	2024-02-14	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.004	0.80	0.0	0.05	16.14	0.00	2.127	26.34	3.00	6.3	93.7	0.0	-1.53	1.49	0.84	0.83	2.29	9813	1265	9	0	0	0	0	logfile
✔	6VXH	21437	2024-02-14	2020-02-21	4.0	4.27	—	4.2	0.006	1.07	0.0	0.06	16.22	0.01	2.245	5.74	0.31	9.9	89.9	0.2	-6.42	0.65	0.82	—	4.2	0.006	0.83	0.0	0.05	17.08	0.00	2.144	12.87	5.72	12.2	87.8	0.0	-2.96	0.60	0.65	0.83	—	8879	1130	4	0	3	0	0	logfile
✔	6VX5	21430	2024-02-15	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.60	0.0	0.04	16.42	0.00	2.098	8.79	2.01	1.7	98.3	0.0	-0.44	1.26	0.67	0.80	2.39	13056	1575	6	0	1	0	0	logfile
✔	6VX6	21431	2024-02-16	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.003	0.61	0.0	0.04	16.32	0.00	2.062	7.65	1.82	1.5	98.5	0.0	0.68	0.97	0.77	0.89	3.37	15061	1830	10	0	6	0	0	logfile
✔	6VX3	21428	2024-02-13	2020-02-21	3.7	3.91	—	3.9	0.009	1.11	0.0	0.05	19.67	0.00	1.829	25.97	4.02	7.4	92.6	0.0	-4.21	0.60	0.81	2.86	3.9	0.003	0.66	0.0	0.04	18.71	0.00	2.231	9.63	6.53	3.7	96.3	0.0	-1.70	1.26	0.59	0.80	2.12	7780	900	8	0	8	0	0	logfile
✔	6VXi	21438	2024-02-14	2020-02-21	3.7	3.67	—	3.7	0.008	1.00	0.0	0.06	15.95	0.00	2.281	6.73	2.07	9.5	90.3	0.2	-6.00	0.61	0.79	2.72	3.7	0.005	0.81	0.0	0.05	16.96	0.00	2.124	13.96	4.67	8.5	91.4	0.1	-2.60	0.57	0.61	0.81	2.42	8898	1132	4	0	3	0	0	logfile

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