Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VWN	21422	2024-02-21	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	23.32	0.00	1.951	7.12	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.60	0.0	0.03	23.63	0.00	1.862	15.41	3.57	5.7	94.3	0.0	-1.20	1.22	0.84	0.86	1.12	140036	5341	57	4580	55	0	0	logfile
✔	6VWX	21425	2024-02-13	2020-02-20	3.1	3.47	—	3.5	0.011	1.29	0.0	0.05	22.96	0.01	2.200	11.67	15.83	8.1	91.5	0.4	-4.41	0.63	0.83	1.16	3.5	0.003	0.73	0.0	0.04	19.07	0.00	2.229	8.75	6.28	6.7	93.3	0.0	-1.15	0.61	0.65	0.84	2.15	7782	900	8	0	10	0	0	logfile
✔	6VWK	21419	2024-02-14	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	3.5	0.003	0.65	0.0	0.04	15.23	0.00	2.247	6.79	2.01	1.9	98.1	0.0	3.78	1.21	0.63	0.84	1.25	8423	1133	13	0	0	0	0	logfile
✔	6VWL	21420	2024-02-21	2020-02-20	3.1	3.37	—	3.0	0.005	0.62	0.0	0.04	22.73	0.00	1.922	7.24	1.40	4.2	95.7	0.0	-2.42	0.82	0.85	2.58	3.0	0.003	0.57	0.0	0.03	23.20	0.00	1.871	13.10	4.21	4.9	95.1	0.0	-0.66	0.55	0.83	0.87	2.21	140603	5383	58	4593	34	0	0	logfile
✔	6VWM	21421	2024-02-21	2020-02-20	3.4	3.74	—	3.2	0.003	0.59	0.0	0.03	23.19	0.00	1.963	7.00	1.73	5.0	95.0	0.0	-3.11	0.82	0.83	1.68	3.2	0.002	0.60	0.0	0.03	23.57	0.00	1.965	13.88	3.39	5.6	94.4	0.0	-1.22	2.09	0.83	0.85	1.55	140044	5342	57	4580	53	0	0	logfile
✔	6M04	30029	2024-02-22	2020-02-20	4.36	4.48	4.25	4.3	0.006	1.28	0.0	0.07	13.63	0.01	2.245	9.68	1.93	12.5	87.5	0.0	-5.02	0.74	0.74	—	4.3	0.003	0.86	0.0	0.05	13.85	0.00	2.114	20.38	0.00	10.6	89.4	0.0	-2.85	1.75	0.75	0.76	—	34666	4282	6	0	0	0	0	logfile
✔	6M02	30028	2024-02-17	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.35	0.01	2.263	6.38	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.002	0.68	0.0	0.04	17.28	0.00	2.296	9.33	3.71	3.2	96.8	0.0	-2.03	1.19	0.61	0.71	1.42	18935	2345	7	0	0	0	0	logfile
✔	6VWJ	21418	2024-02-15	2020-02-19	4.21	4.58	—	4.2	0.005	0.99	0.0	0.05	13.45	0.01	1.915	9.24	1.20	4.8	94.8	0.4	-1.20	0.79	0.65	—	4.2	0.003	0.66	0.0	0.05	12.81	0.00	1.921	9.58	0.00	8.6	91.4	0.0	-1.17	1.52	0.80	0.68	—	11799	747	2	0	0	0	5789	logfile
✔	6VWG	21415	2024-02-15	2020-02-19	3.21	3.61	—	3.5	0.007	0.89	0.0	0.05	14.65	0.01	1.873	4.30	1.26	11.4	88.6	0.0	-2.78	0.71	0.72	2.81	3.5	0.005	0.72	0.0	0.04	16.08	0.00	2.012	8.60	2.53	12.0	88.0	0.0	-2.60	1.37	0.72	0.75	2.98	12751	800	5	0	4	0	6282	logfile
✔	6VWH	21416	2024-02-14	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.74	0.01	2.223	10.17	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.66	0.0	0.04	12.53	0.00	1.940	10.41	0.00	8.6	91.0	0.4	-1.38	1.53	0.71	0.60	—	8461	539	2	0	0	0	4139	logfile
✔	6VWi	21417	2024-02-15	2020-02-19	3.7	4.08	—	3.9	0.007	0.88	0.0	0.05	14.89	0.01	2.298	4.53	1.97	11.9	88.1	0.0	-2.44	0.78	0.74	1.55	3.9	0.003	0.65	0.0	0.04	15.59	0.00	1.964	9.22	2.67	8.4	91.4	0.1	-1.78	0.99	0.78	0.74	1.62	12752	800	5	0	4	0	6283	logfile
✔	6Y3Y	10676	2024-02-13	2020-02-19	3.39	3.74	3.39	3.7	0.008	1.04	0.0	0.07	17.09	0.01	2.297	4.49	0.33	10.5	89.5	0.0	-4.44	0.80	0.83	4.70	3.7	0.004	0.67	0.0	0.05	12.32	0.00	2.173	11.28	2.61	9.8	90.2	0.0	-2.16	1.53	0.83	0.86	4.20	5854	664	12	0	34	0	0	logfile
✔	6LZ3	30022	2024-02-16	2020-02-18	3.2	3.37	3.26	3.3	0.007	1.20	0.0	0.06	17.57	0.01	2.201	4.66	3.86	8.7	90.9	0.4	-6.45	0.80	0.81	2.16	3.3	0.003	0.63	0.0	0.04	16.93	0.00	2.072	9.61	2.90	8.1	91.9	0.0	-2.06	0.67	0.80	0.83	2.60	15968	1944	8	0	4	0	0	logfile
✔	6VW2	21410	2024-02-13	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.006	0.96	0.0	0.05	15.67	0.00	2.143	20.93	13.33	16.8	83.2	0.0	-4.96	0.42	0.40	0.72	1.82	1800	240	10	0	0	0	0	logfile
✔	6VVo	21405	2024-02-19	2020-02-18	3.4	3.45	—	3.3	0.008	0.82	0.0	0.05	14.18	0.00	1.915	9.84	0.41	4.7	95.2	0.1	-2.93	0.89	0.86	2.75	3.3	0.003	0.55	0.0	0.04	15.35	0.00	1.973	7.39	1.42	3.2	96.8	0.0	0.55	1.15	0.90	0.89	2.60	19668	2493	13	0	9	0	0	logfile
✔	6VW0	21409	2024-02-21	2020-02-18	3.59	4.20	—	3.9	0.010	0.95	0.0	0.06	20.44	0.01	2.126	8.10	6.78	7.9	92.0	0.1	-3.75	0.88	0.86	1.62	3.9	0.006	0.71	0.0	0.04	20.23	0.00	2.008	15.17	3.53	6.9	93.1	0.0	-0.23	0.59	0.87	0.85	1.25	29944	3516	11	130	3	0	0	logfile
✔	6LZ1	30021	2024-02-22	2020-02-17	3.2	3.36	3.57	3.3	0.005	0.61	0.0	0.05	15.47	0.00	2.099	11.03	2.52	7.7	92.3	0.0	-3.40	0.87	0.86	3.56	3.3	0.004	0.58	0.0	0.04	16.42	0.00	2.050	10.47	3.68	6.7	93.3	0.0	-1.44	0.33	0.86	0.87	3.49	34492	4304	8	0	4	0	0	logfile
✔	6VV5	21391	2024-02-20	2020-02-17	3.5	3.62	3.61	3.6	0.017	1.68	0.0	0.09	12.91	0.03	2.262	4.99	1.26	1.6	98.3	0.1	0.87	0.74	0.84	3.28	3.6	0.003	0.60	0.0	0.04	13.83	0.00	2.219	5.95	1.75	3.2	96.8	0.0	0.15	1.36	0.75	0.84	2.74	26838	3291	36	0	102	0	0	logfile
✔	6LZ0	30020	2024-02-13	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.11	0.01	2.126	17.43	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.004	0.77	0.0	0.04	16.44	0.01	2.131	8.58	6.17	6.5	93.5	0.0	-0.33	1.28	0.41	0.67	1.66	4006	591	3	0	1	0	0	logfile
✔	6LYY	30019	2024-02-13	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.8	0.003	0.72	0.0	0.04	15.81	0.00	2.176	9.68	4.79	5.2	94.8	0.0	0.09	0.82	0.46	0.67	1.75	4104	597	3	0	1	0	0	logfile

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