Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TZ5	20589	2024-02-21	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	3.4	0.003	0.76	0.0	0.04	18.85	0.00	2.077	13.60	3.88	1.5	98.5	0.0	3.60	1.61	0.50	0.84	0.87	93500	12104	68	0	0	0	0	logfile
✔	6SiC	10209	2024-02-14	2019-08-09	3.52	4.05	3.88	3.9	0.009	1.20	1.0	0.06	12.66	0.01	1.244	9.63	0.72	12.8	87.0	0.3	-4.93	0.72	0.75	1.86	3.9	0.004	0.86	0.0	0.05	16.73	0.00	2.047	21.67	3.98	10.6	89.3	0.1	-2.68	1.43	0.70	0.78	1.11	62079	7487	36	90	1	0	0	logfile
✔	6TZ0	20585	2024-02-15	2019-08-09	2.8	2.86	—	2.8	0.006	0.94	1.0	0.06	10.04	0.01	2.298	3.74	0.54	3.9	96.1	0.0	-3.29	0.54	0.84	4.34	2.8	0.002	0.58	0.0	0.04	15.66	0.00	2.177	6.35	3.02	3.3	96.7	0.0	0.55	1.30	0.55	0.87	3.21	13674	1709	2	0	0	0	0	logfile
✔	6Si8	10208	2024-02-20	2019-08-09	3.4	3.84	—	3.8	0.010	1.11	0.0	0.07	14.59	0.01	2.250	3.94	2.45	8.3	91.3	0.4	-3.81	0.70	0.76	3.61	3.8	0.003	0.61	0.0	0.04	15.15	0.00	1.979	6.64	0.84	3.7	96.3	0.1	-0.74	0.83	0.72	0.80	3.50	26542	1700	8	0	4	0	13086	logfile
✔	6SiH	10210	2024-02-23	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.52	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.002	0.55	0.0	0.04	13.52	0.00	2.165	9.68	0.00	6.0	94.0	0.0	1.09	2.09	0.91	0.82	—	37310	4880	10	0	0	0	0	logfile
✔	6TYi	20583	2024-02-14	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	16.67	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.003	0.52	0.0	0.03	17.69	0.00	2.196	6.22	1.83	2.4	97.6	0.0	3.33	1.18	0.63	0.79	1.29	9184	1186	11	0	4	0	0	logfile
✔	6TYS	20584	2024-02-16	2019-08-09	3.5	3.77	—	3.7	0.021	1.95	6.0	0.11	13.05	0.01	2.321	0.84	0.17	2.0	98.0	0.0	0.77	0.79	0.85	2.59	3.7	0.003	0.68	0.0	0.04	14.42	0.00	2.201	6.78	2.84	3.6	96.4	0.0	0.76	2.06	0.77	0.85	2.38	16059	2022	24	0	39	0	0	logfile
✔	6Q2N	20575	2024-02-15	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.01	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.005	0.87	0.0	0.05	11.81	0.01	1.996	22.10	0.00	12.0	88.0	0.1	-2.96	0.97	0.62	0.59	—	13140	1678	8	0	8	0	0	logfile
✔	6Q2S	20579	2024-02-16	2019-08-08	3.8	4.19	—	4.0	0.008	1.06	0.0	0.06	9.19	0.01	1.366	3.84	0.13	7.6	92.4	0.0	-4.58	0.64	0.51	0.55	4.0	0.003	0.80	0.0	0.04	14.25	0.00	2.026	15.82	3.38	6.2	93.8	0.0	-2.25	1.86	0.74	0.70	0.19	13726	1734	10	0	22	0	0	logfile
✔	6Q2R	20578	2024-02-21	2019-08-08	4.3	4.92	—	4.6	0.004	0.82	0.0	0.05	8.76	0.01	1.384	4.86	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.003	0.66	0.0	0.04	11.10	0.00	2.092	15.51	0.03	5.7	94.3	0.0	-1.38	1.75	0.75	0.71	—	30392	3800	16	0	40	0	0	logfile
✔	6Q2o	20576	2024-02-16	2019-08-08	3.65	3.77	—	3.9	0.004	0.79	0.0	0.05	8.54	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.006	0.95	0.0	0.05	14.65	0.01	2.096	20.66	2.59	8.3	91.7	0.0	-2.44	2.06	0.68	0.64	0.63	15196	1900	8	0	20	0	0	logfile
✔	6SHS	10204	2024-02-13	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.3	0.003	0.68	0.0	0.05	12.88	0.00	2.263	7.54	0.00	16.2	83.8	0.0	-5.34	1.15	0.72	0.70	—	7068	480	12	0	0	0	3408	logfile
✔	6Si7	10206	2024-02-17	2019-08-08	3.4	3.48	—	3.4	0.004	0.79	0.0	0.05	14.71	0.01	2.267	12.97	0.00	9.2	90.8	0.0	-4.55	0.71	0.77	1.03	3.4	0.003	0.64	0.0	0.04	16.58	0.00	2.230	19.95	4.00	7.5	92.5	0.0	-1.26	0.58	0.75	0.82	1.21	19476	2502	18	0	0	0	0	logfile
✔	6Q2J	20572	2024-02-16	2019-08-08	4.1	4.32	—	4.1	0.006	0.98	0.0	0.06	9.00	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.003	0.79	0.0	0.05	12.13	0.00	2.192	13.35	0.00	6.3	93.7	0.0	-1.78	2.42	0.69	0.61	—	13796	1738	8	0	22	0	0	logfile
✔	6SHT	10205	2024-02-23	2019-08-08	2.73	2.88	2.75	2.8	0.015	1.55	0.0	0.07	19.28	0.01	0.000	7.75	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.003	0.55	0.0	0.04	19.44	0.00	0.000	4.10	3.19	1.8	97.8	0.3	5.24	1.77	0.72	0.85	2.06	37152	4176	24	0	48	1728	0	logfile
✔	6SHN	10201	2024-02-19	2019-08-07	3.3	3.82	—	3.7	0.021	1.17	0.0	0.12	13.95	0.01	1.998	3.82	4.81	5.4	94.5	0.1	-3.18	0.65	0.73	3.53	3.7	0.003	0.60	0.0	0.09	14.97	0.00	1.935	6.02	2.19	5.0	95.0	0.0	-0.93	2.19	0.66	0.76	3.13	25339	1644	6	0	2	0	12513	logfile
✔	6SHJ	10199	2024-02-19	2019-08-07	3.2	3.72	—	3.7	0.010	1.04	6.0	0.07	14.70	0.01	2.114	4.81	3.58	7.0	92.9	0.1	-4.39	0.49	0.56	2.91	3.7	0.003	0.56	0.0	0.04	15.06	0.00	1.956	7.09	2.65	6.1	93.9	0.0	-1.99	1.23	0.64	0.76	3.18	25934	1664	8	0	4	0	12832	logfile
✔	6SHQ	10203	2024-02-20	2019-08-07	3.2	3.65	—	3.6	0.011	1.28	2.0	0.10	14.46	0.01	2.246	10.32	2.28	7.9	92.1	0.0	-3.69	0.54	0.66	4.02	3.6	0.002	0.60	0.0	0.04	14.81	0.00	2.021	5.27	0.90	2.8	97.2	0.0	-0.87	1.21	0.66	0.79	4.19	26826	1696	8	0	4	0	13258	logfile
✔	6SH8	10196	2024-02-16	2019-08-06	3.14	3.59	3.26	3.4	0.007	0.74	0.0	0.05	15.45	0.00	1.970	18.05	0.09	12.5	87.3	0.2	-4.90	0.74	0.76	2.41	3.4	0.004	0.72	0.0	0.05	16.77	0.00	2.052	15.22	3.13	9.9	90.1	0.0	-2.49	0.66	0.71	0.83	2.04	67477	8181	40	80	6	0	0	logfile
✔	6SHB	10197	2024-02-16	2019-08-06	3.07	3.59	3.24	3.4	0.009	0.87	0.0	0.05	16.24	0.00	1.963	21.45	0.48	17.2	82.4	0.4	-5.08	0.74	0.73	2.65	3.4	0.005	0.87	4.0	0.05	17.32	0.00	1.833	17.47	3.49	11.6	88.4	0.0	-2.84	1.07	0.73	0.85	2.34	67700	8179	40	92	6	0	0	logfile

• ← previous
• Page 494 of 588
• next →