Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KNF	0730	2024-02-13	2019-08-05	2.99	3.24	—	3.2	0.007	0.63	0.0	0.05	15.04	0.00	2.015	7.65	8.82	3.6	96.4	0.0	-2.46	0.83	0.91	4.90	3.2	0.005	0.57	0.0	0.05	15.28	0.00	2.016	6.67	4.41	2.2	97.8	0.0	-0.76	0.92	0.83	0.92	4.47	7749	1002	6	0	6	0	0	logfile
✔	6SH3	10192	2024-02-18	2019-08-05	3.4	3.55	—	3.5	0.006	0.91	0.0	0.05	13.40	0.01	2.287	3.59	0.62	6.5	93.5	0.0	-3.29	0.70	0.80	2.63	3.5	0.002	0.64	0.0	0.04	15.63	0.01	2.261	5.62	2.87	5.6	94.4	0.0	-0.67	2.17	0.70	0.82	2.52	21021	2632	14	0	7	0	0	logfile
✔	6SGT	10184	2024-02-25	2019-08-05	3.46	3.54	3.37	3.5	0.004	0.72	0.0	0.04	12.56	0.00	2.205	8.28	0.29	4.5	95.4	0.1	-4.71	0.65	0.79	2.46	3.5	0.004	0.64	0.0	0.04	15.56	0.00	1.908	9.01	1.96	5.2	94.8	0.0	-0.81	2.28	0.67	0.83	2.25	52180	3408	5	0	0	0	26299	logfile
✔	6SGS	10183	2024-02-13	2019-08-05	3.2	3.29	3.18	3.3	0.004	0.64	0.0	0.04	13.19	0.00	2.011	5.87	0.14	2.8	97.2	0.0	-3.26	0.57	0.69	0.97	3.3	0.004	0.58	0.0	0.04	15.68	0.00	1.955	6.78	1.36	2.5	97.5	0.0	1.23	2.14	0.66	0.85	2.38	54156	3528	8	0	0	0	27338	logfile
✔	6SGU	10185	2024-02-25	2019-08-05	3.27	3.39	3.20	3.3	0.005	0.72	0.0	0.04	12.69	0.00	2.197	8.74	0.22	3.9	96.0	0.0	-4.40	0.67	0.76	1.67	3.3	0.003	0.61	0.0	0.04	15.70	0.00	1.983	7.38	1.92	2.9	97.1	0.0	-0.01	1.01	0.70	0.85	2.49	52169	3407	5	0	0	0	26294	logfile
✔	6SH5	10194	2024-02-15	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.004	0.82	0.0	0.04	5.28	0.00	2.265	5.49	0.00	16.4	83.6	0.0	-2.90	1.64	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✔	6SGX	10187	2024-02-15	2019-08-05	3.7	3.85	—	3.8	0.006	1.03	1.0	0.06	13.90	0.01	2.280	5.19	0.26	9.9	90.0	0.1	-4.82	0.59	0.81	1.45	3.8	0.004	0.72	0.0	0.04	15.64	0.01	2.229	10.25	5.03	10.3	89.7	0.0	-0.57	1.17	0.59	0.81	1.19	11227	1512	5	0	0	0	0	logfile
✔	6SGZ	10191	2024-02-15	2019-08-05	3.9	4.15	—	4.0	0.003	0.70	0.0	0.04	13.52	0.00	2.203	12.28	0.00	10.3	89.4	0.3	-4.16	0.66	0.82	1.40	4.0	0.003	0.74	0.0	0.04	15.51	0.00	2.148	13.20	3.93	9.7	90.2	0.1	-0.41	1.22	0.65	0.82	1.34	11177	1505	5	0	0	0	0	logfile
✔	6SGW	10186	2024-02-18	2019-08-05	3.8	4.00	—	3.9	0.006	1.04	0.0	0.06	14.45	0.01	2.259	6.90	0.26	9.5	90.3	0.2	-4.52	0.63	0.79	1.47	3.9	0.003	0.70	0.0	0.04	15.85	0.00	2.182	11.59	3.52	9.5	90.4	0.1	-0.39	0.57	0.64	0.78	0.84	22448	3020	10	0	0	0	0	logfile
✔	6SGR	10182	2024-02-13	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.15	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.003	0.56	0.0	0.04	15.59	0.00	2.002	5.67	1.29	3.0	97.0	0.0	1.06	0.77	0.69	0.86	2.95	54142	3528	8	0	0	0	27330	logfile
✔	6SH4	10193	2024-02-15	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.69	0.0	0.04	4.47	0.00	2.243	1.49	0.00	7.0	92.8	0.2	0.09	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	6SGY	10188	2024-02-13	2019-08-05	4.6	4.79	—	4.6	0.007	1.35	0.0	0.06	15.71	0.01	2.225	11.45	0.67	12.8	87.2	0.0	-4.34	0.72	0.63	—	6.6	0.003	0.86	0.0	0.04	13.15	0.01	2.107	11.79	0.00	10.5	89.5	0.0	-2.92	3.43	0.78	0.77	—	5766	804	2	0	0	0	0	logfile
✔	6Q16	20556	2024-02-15	2019-08-02	4.1	4.11	—	4.1	0.007	1.05	0.0	0.06	14.24	0.01	2.214	3.99	0.67	3.6	96.4	0.0	-5.13	0.85	0.83	—	4.1	0.003	0.67	0.0	0.04	13.92	0.00	2.062	8.57	0.02	3.1	96.9	0.0	0.06	0.75	0.85	0.84	—	118198	14787	93	0	0	0	0	logfile
✔	6Q14	20310	2024-02-27	2019-08-02	3.8	4.81	—	4.0	0.007	0.91	1.0	0.06	13.88	0.01	2.186	3.02	0.38	4.2	95.8	0.0	-4.80	0.78	0.68	1.29	4.1	0.004	0.76	1.0	0.04	14.87	0.00	1.942	12.74	1.72	3.5	96.5	0.0	0.09	1.88	0.87	0.87	1.24	147873	18678	74	0	0	0	0	logfile
✔	6SFX	10162	2024-02-17	2019-08-02	4.0	3.90	3.75	3.9	0.012	1.02	1.0	0.06	16.15	0.01	0.560	24.26	0.14	7.7	92.0	0.3	-4.75	0.73	0.74	—	3.8	0.004	0.86	0.0	0.05	18.15	0.00	2.056	22.23	3.83	4.8	95.2	0.0	-0.78	1.49	0.74	0.76	—	20196	2602	14	0	0	0	0	logfile
✔	6Q0X	20555	2024-02-15	2019-08-02	4.2	4.30	—	4.2	0.007	0.88	0.0	0.05	17.07	0.00	2.139	24.04	1.21	8.1	91.9	0.0	-3.83	0.68	0.72	—	4.2	0.004	0.75	0.0	0.04	16.07	0.00	2.160	18.57	0.00	6.7	93.3	0.0	0.10	1.38	0.67	0.72	—	12468	1492	4	0	0	0	0	logfile
✔	6PZZ	20541	2024-02-17	2019-08-01	3.6	4.09	3.67	3.9	0.024	1.89	0.0	0.11	12.06	0.01	2.292	1.66	0.00	2.8	97.0	0.2	0.57	0.80	0.85	4.00	3.9	0.004	0.77	0.0	0.05	13.64	0.00	2.012	12.57	2.74	5.7	94.1	0.2	-0.64	1.62	0.79	0.86	3.02	19772	2464	24	0	48	0	0	logfile
✔	6Q05	20543	2024-02-20	2019-08-01	2.8	2.78	—	2.7	0.025	2.06	27.0	0.16	15.80	0.01	2.255	2.06	0.91	1.7	98.3	0.1	0.58	0.76	0.80	4.27	2.7	0.007	0.77	3.0	0.05	14.69	0.00	2.103	7.33	2.92	2.9	97.1	0.0	-0.07	1.62	0.80	0.87	4.44	28977	3477	42	0	144	195	0	logfile
✔	6Q06	20544	2024-02-20	2019-08-01	2.7	2.85	—	2.8	0.025	2.02	21.0	0.15	15.86	0.01	2.255	1.69	0.91	1.6	98.3	0.1	0.58	0.77	0.80	4.50	2.8	0.004	0.81	3.0	0.05	14.59	0.00	2.165	7.49	2.49	2.0	98.0	0.0	0.23	0.62	0.78	0.85	4.26	28926	3477	42	0	138	216	0	logfile
✔	6PZK	20536	2024-02-15	2019-08-01	3.2	3.65	—	3.6	0.012	1.93	16.0	0.12	14.42	0.02	2.533	0.30	1.95	3.8	96.2	0.0	-2.86	0.65	0.75	2.57	3.6	0.003	0.62	0.0	0.04	16.16	0.00	2.167	9.29	2.82	1.9	98.1	0.0	1.54	1.31	0.70	0.81	1.90	13153	1624	5	0	0	0	0	logfile

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