Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PZZ	20541	2024-02-17	2019-08-01	3.6	4.09	3.67	3.9	0.024	1.89	0.0	0.11	12.06	0.01	2.292	1.66	0.00	2.8	97.0	0.2	0.57	0.80	0.85	4.00	3.9	0.004	0.77	0.0	0.05	13.64	0.00	2.012	12.57	2.74	5.7	94.1	0.2	-0.64	1.62	0.79	0.86	3.02	19772	2464	24	0	48	0	0	logfile
✔	6PZK	20536	2024-02-15	2019-08-01	3.2	3.65	—	3.6	0.012	1.93	16.0	0.12	14.42	0.02	2.533	0.30	1.95	3.8	96.2	0.0	-2.86	0.65	0.75	2.57	3.6	0.003	0.62	0.0	0.04	16.16	0.00	2.167	9.29	2.82	1.9	98.1	0.0	1.54	1.31	0.70	0.81	1.90	13153	1624	5	0	0	0	0	logfile
✔	6Q07	20545	2024-02-20	2019-08-01	2.9	3.09	—	3.0	0.025	2.02	19.0	0.15	15.92	0.01	2.256	1.64	0.91	1.6	98.3	0.1	0.58	0.77	0.80	4.66	3.0	0.004	0.64	3.0	0.04	14.32	0.00	2.196	6.77	2.69	2.4	97.6	0.0	0.14	1.25	0.76	0.84	4.25	28737	3477	39	0	135	60	0	logfile
✔	6PZC	20534	2024-02-13	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.52	0.42	9.7	90.3	0.0	-5.15	0.60	0.54	—	4.4	0.004	0.75	0.0	0.04	11.33	0.00	2.087	13.46	0.00	6.9	93.0	0.1	-0.07	1.65	0.70	0.78	—	7456	1173	1	0	0	0	0	logfile
✔	6PZB	20533	2024-02-13	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.69	0.0	0.04	8.79	0.00	1.993	7.50	0.00	7.2	92.8	0.0	0.89	0.61	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	6PZ9	20528	2024-02-13	2019-07-31	3.65	3.90	—	3.9	0.009	1.21	0.0	0.06	12.97	0.01	2.205	3.30	0.00	6.9	93.1	0.0	-3.88	0.65	0.67	2.19	3.9	0.003	0.67	0.0	0.04	15.24	0.00	2.198	7.10	3.73	4.0	96.0	0.0	-0.09	1.14	0.68	0.71	0.55	7773	1196	3	0	2	0	0	logfile
✔	6PZi	20535	2024-02-13	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	9.01	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.002	0.65	0.0	0.04	8.28	0.00	2.162	5.20	0.00	3.1	96.9	0.0	2.16	0.55	0.68	0.83	—	7985	1412	1	0	1	0	0	logfile
✔	6PZA	20530	2024-02-14	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	11.13	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	3.8	0.003	0.68	0.0	0.04	15.09	0.00	2.194	10.34	4.76	5.6	94.4	0.0	0.55	1.22	0.62	0.79	1.19	9659	1441	3	0	2	0	0	logfile
✔	6PZ8	20527	2024-02-20	2019-07-31	4.19	4.96	4.49	4.4	0.018	1.82	0.0	0.10	12.91	0.01	2.247	1.37	0.30	3.2	96.2	0.6	0.33	0.75	0.57	—	4.2	0.003	0.78	0.0	0.05	12.64	0.00	2.119	22.66	0.00	5.9	93.8	0.3	-1.47	1.09	0.77	0.65	—	28683	3585	42	0	78	0	0	logfile
✔	6KMF	0724	2024-02-13	2019-07-31	3.6	3.51	—	4.0	0.006	0.90	0.0	0.06	14.66	0.01	2.298	5.31	0.62	13.4	86.6	0.0	-4.41	0.52	0.80	2.69	4.0	0.003	0.64	0.0	0.04	16.22	0.00	2.139	9.51	3.48	8.1	91.9	0.0	-2.99	0.46	0.52	0.79	2.63	7704	1011	4	0	0	0	0	logfile
✔	6KLH	0710	2024-02-20	2019-07-30	3.7	3.90	—	3.8	0.003	0.72	0.0	0.04	14.13	0.00	2.233	12.26	0.53	9.0	90.8	0.1	-1.80	0.79	0.76	0.98	3.8	0.003	0.73	0.0	0.04	16.17	0.00	2.075	12.14	1.67	8.2	91.8	0.0	-0.73	1.46	0.80	0.78	1.00	28834	3768	6	14	4	0	0	logfile
✔	6SEG	10155	2024-02-15	2019-07-30	3.1	3.19	—	3.2	0.006	0.86	0.0	0.05	27.75	0.01	2.283	3.10	0.00	1.3	98.7	0.0	-3.47	0.66	0.79	3.38	3.2	0.005	0.94	1.0	0.05	28.50	0.01	1.805	6.91	1.84	1.4	98.6	0.0	1.43	0.34	0.66	0.81	2.38	11689	728	10	290	0	0	0	logfile
✔	6KL9	0704	2024-02-15	2019-07-30	3.25	3.32	—	3.3	0.005	1.01	1.0	0.06	13.56	0.01	2.031	6.91	2.72	9.7	90.0	0.2	-4.82	0.66	0.74	2.58	3.3	0.003	0.67	0.0	0.04	16.75	0.00	1.860	9.08	2.80	8.8	91.0	0.1	-0.86	0.75	0.71	0.77	2.22	12191	1414	6	25	2	6	0	logfile
✔	6KLo	0713	2024-02-19	2019-07-30	2.8	3.01	—	2.9	0.005	0.60	0.0	0.05	13.06	0.00	2.185	5.62	0.12	5.9	94.1	0.0	-3.14	0.77	0.87	4.15	2.9	0.003	0.56	0.0	0.05	15.91	0.00	2.120	5.41	1.54	6.0	94.0	0.0	-0.75	0.40	0.75	0.87	3.80	23275	2972	15	0	14	0	0	logfile
✔	6KLX	0721	2024-02-17	2019-07-30	2.9	3.09	—	3.0	0.008	0.70	0.0	0.05	13.80	0.01	2.177	6.64	0.13	6.8	93.2	0.0	-3.59	0.73	0.85	4.20	3.0	0.003	0.52	0.0	0.04	15.84	0.00	2.015	6.71	1.93	5.3	94.7	0.0	-0.80	1.18	0.74	0.86	3.85	20055	2576	14	0	14	0	0	logfile
✔	6PYT	20526	2024-02-25	2019-07-30	2.9	2.66	—	2.9	0.009	1.01	0.0	0.06	10.88	0.01	2.212	4.73	0.94	9.5	90.5	0.0	-4.57	0.47	0.79	3.58	2.9	0.003	0.66	0.0	0.04	17.30	0.00	2.089	8.44	6.17	8.2	91.8	0.0	-1.57	1.66	0.50	0.82	3.39	49920	6624	24	0	0	0	0	logfile
✔	6KLB	0705	2024-02-18	2019-07-30	4.1	4.14	—	4.0	0.004	0.90	1.0	0.05	12.49	0.01	2.015	8.05	0.31	9.0	90.8	0.2	-5.01	0.66	0.55	—	4.0	0.004	0.77	0.0	0.04	14.10	0.00	1.857	16.05	0.00	10.8	89.2	0.0	-1.85	2.89	0.69	0.60	—	21384	2467	11	50	4	11	0	logfile
✔	6KLN	0712	2024-02-15	2019-07-30	3.4	4.21	—	3.7	0.009	0.86	0.0	0.05	16.34	0.00	1.903	12.23	11.46	8.4	91.6	0.0	-4.65	0.70	0.88	2.12	3.7	0.003	0.62	0.0	0.04	15.14	0.00	1.915	8.67	0.64	4.2	95.8	0.0	-0.24	1.18	0.70	0.90	1.86	11748	1488	8	0	8	0	0	logfile
✔	6KLE	0709	2024-02-15	2019-07-30	4.5	4.63	—	4.4	0.003	0.66	0.0	0.04	14.12	0.00	2.199	13.77	0.07	7.6	92.4	0.0	-0.87	0.83	0.76	—	4.4	0.003	0.69	0.0	0.04	14.20	0.00	2.122	15.93	0.00	8.5	91.5	0.0	-0.69	0.49	0.84	0.79	—	12769	1592	3	7	2	0	0	logfile
✔	6KLW	0720	2024-02-19	2019-07-30	2.9	3.04	—	3.0	0.005	0.66	0.0	0.05	13.67	0.00	2.135	6.78	0.00	6.5	93.5	0.0	-3.60	0.75	0.86	3.81	3.0	0.004	0.72	0.0	0.05	16.43	0.00	2.008	7.06	2.10	6.0	94.0	0.0	-0.86	0.42	0.74	0.87	3.52	25179	3238	15	0	14	0	0	logfile

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