Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KLD	0707	2024-02-15	2019-07-30	3.58	3.66	—	3.6	0.003	0.63	0.0	0.04	14.00	0.00	2.199	8.12	0.00	9.2	90.7	0.1	-0.76	0.74	0.82	2.05	3.6	0.003	0.64	0.0	0.04	16.02	0.00	2.136	8.79	2.76	8.8	91.1	0.1	-0.07	0.40	0.72	0.81	1.58	12794	1617	1	0	2	0	0	logfile
✔	6KLH	0710	2024-02-20	2019-07-30	3.7	3.90	—	3.8	0.003	0.72	0.0	0.04	14.13	0.00	2.233	12.26	0.53	9.0	90.8	0.1	-1.80	0.79	0.76	0.98	3.8	0.003	0.73	0.0	0.04	16.17	0.00	2.075	12.14	1.67	8.2	91.8	0.0	-0.73	1.46	0.80	0.78	1.00	28834	3768	6	14	4	0	0	logfile
✔	6PYT	20526	2024-02-25	2019-07-30	2.9	2.66	—	2.9	0.009	1.01	0.0	0.06	10.88	0.01	2.212	4.73	0.94	9.5	90.5	0.0	-4.57	0.47	0.79	3.58	2.9	0.003	0.66	0.0	0.04	17.30	0.00	2.089	8.44	6.17	8.2	91.8	0.0	-1.57	1.66	0.50	0.82	3.39	49920	6624	24	0	0	0	0	logfile
✔	6SE6	10152	2024-02-15	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	27.96	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.005	0.65	0.0	0.03	28.31	0.00	2.076	12.68	2.66	1.9	98.1	0.0	1.51	0.56	0.86	0.84	1.64	12068	771	11	290	0	0	0	logfile
✔	6SE0	10151	2024-02-15	2019-07-29	3.8	4.73	—	4.6	0.009	1.01	0.0	0.06	28.08	0.01	2.248	4.43	0.00	0.9	99.1	0.0	-2.82	0.80	0.78	0.85	4.6	0.003	0.65	0.0	0.03	28.07	0.00	2.148	12.93	3.19	1.7	98.3	0.0	0.98	0.65	0.80	0.77	0.11	12002	765	10	290	0	0	0	logfile
✔	6SEE	10153	2024-02-15	2019-07-29	4.2	4.47	—	4.1	0.008	0.94	0.0	0.05	27.45	0.01	2.252	4.46	0.00	3.0	97.0	0.0	-1.74	0.87	0.83	—	4.1	0.004	0.68	0.0	0.04	27.82	0.00	2.042	16.59	0.16	3.1	96.9	0.0	0.67	0.70	0.87	0.83	—	11949	756	11	290	0	0	0	logfile
✔	6SDZ	10150	2024-02-13	2019-07-29	2.97	3.77	2.34	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.39	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.5	0.006	1.05	0.0	0.05	15.67	0.01	2.048	25.62	3.03	6.2	93.8	0.0	-2.94	1.93	0.85	0.86	3.69	7909	1012	11	0	0	0	0	logfile
✔	6PYH	20524	2024-02-15	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.75	0.55	18.2	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.63	0.0	0.04	13.67	0.00	2.026	12.46	0.00	7.9	92.1	0.0	-2.04	1.26	0.83	0.81	—	13187	1648	3	0	0	0	0	logfile
✔	6SEF	10154	2024-02-15	2019-07-29	3.7	4.25	—	3.6	0.007	0.85	0.0	0.05	27.69	0.00	2.225	4.94	0.00	2.7	97.3	0.0	-2.10	0.88	0.84	2.28	3.5	0.006	0.72	0.0	0.04	28.62	0.00	2.053	18.32	4.34	2.9	97.1	0.0	1.05	0.68	0.89	0.85	2.06	11919	751	11	290	0	0	0	logfile
✔	6PXW	20523	2024-02-15	2019-07-28	3.1	3.31	—	3.3	0.008	0.99	0.0	0.06	9.83	0.01	2.254	4.99	0.16	9.9	89.6	0.5	-4.04	0.76	0.82	4.11	3.3	0.002	0.55	0.0	0.04	13.58	0.00	2.304	5.13	0.55	7.0	93.0	0.0	-1.95	0.78	0.75	0.82	3.40	11198	1386	6	0	0	0	0	logfile
✔	6KKT	0702	2024-02-14	2019-07-27	2.9	3.10	—	3.1	0.011	1.18	0.0	0.07	18.46	0.01	2.343	4.35	0.34	3.6	96.4	0.0	-3.62	0.67	0.85	2.65	3.1	0.004	1.21	0.0	0.05	14.80	0.00	2.021	5.82	2.49	3.3	96.7	0.0	1.58	2.23	0.68	0.87	1.80	8416	1074	12	0	24	0	0	logfile
✔	6KKU	0703	2024-02-14	2019-07-27	3.5	3.59	—	3.6	0.009	1.08	0.0	0.06	18.28	0.01	2.243	2.64	0.00	4.3	95.7	0.0	-3.36	0.60	0.82	3.09	3.6	0.003	0.72	0.0	0.04	13.50	0.00	2.215	7.11	1.93	2.9	97.1	0.0	1.32	0.70	0.61	0.82	1.57	8412	1074	12	0	20	0	0	logfile
✔	6KKR	0701	2024-02-14	2019-07-27	2.9	3.08	—	3.1	0.009	1.12	0.0	0.06	18.50	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.61	0.83	3.04	3.1	0.003	0.63	0.0	0.04	14.17	0.00	2.157	5.99	3.74	3.1	96.9	0.0	1.61	1.22	0.59	0.84	1.92	8416	1074	12	0	24	0	0	logfile
✔	6SD5	10149	2024-02-16	2019-07-26	3.1	3.26	3.11	3.2	0.006	0.71	0.0	0.04	15.04	0.00	2.321	8.86	1.39	8.3	91.7	0.0	-5.48	0.67	0.85	3.48	3.2	0.003	0.62	0.0	0.04	17.05	0.00	2.186	14.22	8.02	3.6	96.4	0.0	-1.20	2.57	0.64	0.85	3.10	14212	1936	22	0	0	0	0	logfile
✔	6SD4	10148	2024-02-24	2019-07-26	2.8	3.00	2.71	2.9	0.010	0.78	0.0	0.04	12.27	0.00	2.235	7.10	0.75	9.7	89.7	0.7	-4.67	0.78	0.85	5.63	2.9	0.003	0.62	0.0	0.04	17.24	0.00	2.133	6.58	1.49	0.0	100.0	0.0	1.18	0.53	0.74	0.85	4.45	40562	5134	34	0	0	0	0	logfile
✔	6SD1	10145	2024-02-23	2019-07-26	2.6	2.74	2.55	2.7	0.003	0.53	0.0	0.04	12.42	0.00	2.149	8.45	0.00	4.3	95.7	0.0	-2.90	0.74	0.84	4.92	2.7	0.003	0.52	0.0	0.04	16.50	0.00	2.166	8.31	1.79	0.0	100.0	0.0	2.32	0.97	0.75	0.86	4.50	39369	4983	33	0	0	0	0	logfile
✔	6SD2	10146	2024-02-15	2019-07-26	3.1	3.07	—	3.1	0.009	0.88	0.0	0.05	16.06	0.00	2.355	7.23	5.56	7.3	92.7	0.0	-4.71	0.68	0.85	4.01	3.1	0.003	0.60	0.0	0.04	17.21	0.00	2.309	9.94	1.92	2.9	97.1	0.0	1.10	1.05	0.71	0.87	3.52	13566	1848	21	0	0	0	0	logfile
✔	6PXM	20521	2024-02-22	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.97	0.00	2.283	4.03	0.78	1.8	98.2	0.0	5.29	1.48	0.79	0.90	3.81	32736	4080	24	0	0	0	0	logfile
✔	6PXD	20518	2024-02-16	2019-07-25	2.9	2.99	—	3.3	0.007	1.05	0.0	0.06	10.49	0.01	2.154	11.21	1.32	4.7	95.3	0.0	-3.03	0.64	0.82	4.45	3.2	0.003	0.67	0.0	0.04	14.65	0.00	2.237	7.91	2.25	4.1	95.9	0.0	0.33	0.61	0.65	0.84	3.81	13899	1700	13	0	13	1	0	logfile
✔	6SCN	10143	2024-02-14	2019-07-24	3.1	3.62	3.00	3.2	0.007	0.84	0.0	0.05	10.50	0.01	2.037	14.15	0.82	4.9	94.3	0.8	-2.90	0.79	0.83	3.66	3.2	0.004	0.68	1.0	0.04	12.85	0.00	2.101	11.81	1.63	3.9	96.1	0.0	0.79	1.01	0.80	0.87	2.95	60582	7875	33	0	0	0	0	logfile

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