Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SCN	10143	2024-02-14	2019-07-24	3.1	3.62	3.00	3.2	0.007	0.84	0.0	0.05	10.50	0.01	2.037	14.15	0.82	4.9	94.3	0.8	-2.90	0.79	0.83	3.66	3.2	0.004	0.68	1.0	0.04	12.85	0.00	2.101	11.81	1.63	3.9	96.1	0.0	0.79	1.01	0.80	0.87	2.95	60582	7875	33	0	0	0	0	logfile
✔	6SCJ	10141	2024-02-23	2019-07-24	3.6	3.92	—	3.8	0.005	0.99	0.0	0.06	11.34	0.01	2.235	4.85	0.14	13.3	86.6	0.1	-4.97	0.78	0.76	1.82	3.8	0.003	0.73	0.0	0.04	13.88	0.00	2.017	11.22	2.22	10.7	89.3	0.0	-2.09	1.24	0.79	0.78	1.40	39884	5102	6	0	36	0	0	logfile
✔	6PX3	20517	2024-02-16	2019-07-24	4.1	5.90	—	4.1	0.008	0.94	0.0	0.06	26.73	0.01	0.861	4.63	0.45	4.5	95.5	0.1	-0.93	0.89	0.79	—	4.1	0.004	0.63	0.0	0.04	27.10	0.00	2.198	18.66	0.00	4.5	95.5	0.0	0.44	2.23	0.90	0.81	—	14323	1059	11	290	3	0	0	logfile
✔	6PWo	20509	2024-02-16	2019-07-23	3.4	4.35	3.45	4.0	0.005	0.61	0.0	0.05	13.33	0.00	2.407	5.49	0.46	2.7	97.3	0.0	-0.76	0.80	0.85	1.87	4.0	0.004	0.57	0.0	0.04	14.53	0.00	2.269	5.12	0.93	2.6	97.4	0.0	2.39	1.24	0.81	0.87	1.76	14217	1862	7	0	0	0	0	logfile
✔	6PWW	20513	2024-02-22	2019-07-23	4.4	5.49	—	4.5	0.004	0.64	0.0	0.04	25.78	0.00	1.996	21.91	1.22	4.5	95.5	0.0	-2.62	0.92	0.84	—	4.5	0.006	0.70	0.0	0.04	25.35	0.00	2.055	28.04	0.00	5.8	94.2	0.0	-1.03	0.64	0.92	0.85	—	18174	1550	14	292	1	0	0	logfile
✔	6PWN	20508	2024-02-16	2019-07-23	3.1	3.65	2.95	3.4	0.008	0.86	0.0	0.04	14.81	0.00	2.276	8.66	0.44	3.5	96.5	0.0	-2.16	0.80	0.84	2.55	3.4	0.005	0.61	0.0	0.04	15.53	0.00	2.234	7.62	2.14	3.4	96.6	0.0	1.14	1.16	0.81	0.85	2.00	15379	1960	14	0	14	0	0	logfile
✔	6PWX	20514	2024-02-20	2019-07-23	4.2	4.53	—	4.2	0.003	0.59	0.0	0.04	27.21	0.00	2.098	13.58	3.58	4.5	95.5	0.0	-1.76	0.89	0.85	—	4.2	0.008	0.76	0.0	0.04	26.65	0.01	2.052	24.16	0.00	5.2	94.8	0.0	0.03	1.20	0.90	0.87	—	14411	1074	11	292	0	0	0	logfile
✔	6PWP	20510	2024-02-16	2019-07-23	4.1	6.04	4.26	4.4	0.010	0.86	0.0	0.05	13.54	0.00	2.096	24.59	0.31	6.8	93.2	0.0	-3.74	0.80	0.87	—	4.4	0.004	0.63	0.0	0.04	13.66	0.00	2.118	14.05	0.00	4.3	95.7	0.0	0.11	0.68	0.80	0.86	—	14903	1960	7	0	0	0	0	logfile
✔	6PWF	20507	2024-02-16	2019-07-22	4.07	4.13	—	4.1	0.009	1.01	0.0	0.06	26.98	0.01	2.066	6.15	0.11	9.8	90.2	0.0	-6.10	0.64	0.76	—	4.1	0.004	0.66	0.0	0.04	26.90	0.00	2.060	11.29	0.00	6.9	93.1	0.0	-2.60	1.13	0.64	0.76	—	15197	1208	11	292	0	0	0	logfile
✔	6PWC	20505	2024-02-13	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.004	0.75	0.0	0.04	6.37	0.00	2.094	19.59	0.00	7.2	92.8	0.0	-0.38	1.57	0.61	0.59	—	5879	1055	5	0	0	0	0	logfile
✔	6PWE	20506	2024-02-15	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.12	0.01	2.264	5.38	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.005	0.66	0.0	0.04	28.08	0.00	2.063	12.36	3.40	4.9	94.9	0.1	-1.46	1.42	0.70	0.81	1.51	11923	744	10	294	0	0	0	logfile
✔	6PW9	20501	2024-02-14	2019-07-22	4.03	4.12	—	4.1	0.007	1.23	0.0	0.24	15.09	0.01	1.781	6.70	1.81	4.4	95.6	0.0	-4.47	0.71	0.70	—	4.1	0.003	0.82	0.0	0.05	14.13	0.00	2.226	12.89	0.00	3.9	96.1	0.0	-1.23	2.49	0.73	0.74	—	8836	1075	5	0	3	0	0	logfile
✔	6PVM	20493	2024-02-18	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	4.3	0.004	0.88	0.0	0.04	13.70	0.00	2.115	15.85	0.00	15.5	84.4	0.2	-2.53	0.99	0.50	0.76	—	21006	2576	6	0	2	0	0	logfile
✔	6PVP	20496	2024-02-18	2019-07-21	4.48	4.57	—	4.4	0.008	1.24	0.0	0.06	12.74	0.01	2.223	7.59	0.81	15.6	84.2	0.2	-5.24	0.68	0.77	—	4.4	0.003	0.82	0.0	0.04	13.59	0.00	2.067	17.42	0.00	14.7	85.2	0.2	-1.88	2.09	0.68	0.80	—	21425	2644	5	0	1	0	0	logfile
✔	6KJ6	0700	2024-02-25	2019-07-21	3.8	3.90	3.82	3.8	0.009	1.10	0.0	0.06	18.21	0.01	2.084	5.30	1.08	13.9	86.0	0.1	-5.39	0.81	0.83	2.38	3.8	0.003	0.65	0.0	0.04	18.46	0.00	2.045	7.88	2.81	6.8	93.2	0.0	-3.21	1.51	0.83	0.83	1.65	26496	3494	12	97	3	0	0	logfile
✔	6PVL	20492	2024-02-18	2019-07-21	4.4	4.48	—	4.4	0.008	1.13	0.0	0.06	11.67	0.01	2.202	6.80	1.39	15.4	84.2	0.5	-5.53	0.69	0.81	—	4.4	0.004	0.80	0.0	0.04	13.07	0.00	2.117	14.31	0.00	12.9	87.0	0.2	-1.11	1.46	0.69	0.81	—	21006	2576	5	0	2	0	0	logfile
✔	6PVN	20494	2024-02-18	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	4.1	0.003	0.84	0.0	0.04	13.93	0.00	2.201	10.12	0.00	13.3	86.6	0.2	-2.00	0.97	0.69	0.80	—	20874	2576	6	0	2	0	0	logfile
✔	6PVK	20491	2024-02-14	2019-07-20	3.4	3.47	—	3.4	0.010	1.03	5.0	0.05	25.56	0.01	1.370	14.08	6.50	10.3	88.7	1.0	-4.94	0.69	0.69	1.32	3.4	0.005	0.71	0.0	0.04	24.75	0.00	2.001	11.30	5.29	9.3	90.7	0.1	-2.60	1.25	0.79	0.81	1.62	60554	1791	18	2169	0	2	0	logfile
✔	6KiZ	0695	2024-02-20	2019-07-20	4.5	4.53	—	3.5	0.007	0.86	0.0	0.05	23.34	0.01	2.253	5.93	0.00	6.7	93.3	0.0	-3.09	0.88	0.83	—	3.5	0.003	0.61	0.0	0.04	23.11	0.00	2.154	12.98	0.07	5.8	94.2	0.0	-0.93	0.76	0.88	0.84	—	19889	1762	15	290	1	0	0	logfile
✔	6KiU	9998	2024-02-20	2019-07-20	3.2	3.29	—	3.2	0.007	0.86	0.0	0.05	22.07	0.01	2.178	3.22	0.00	6.6	93.4	0.0	-3.67	0.72	0.78	2.19	3.2	0.003	0.60	0.0	0.04	23.61	0.00	2.149	9.06	1.15	5.2	94.8	0.0	-1.24	1.26	0.74	0.83	1.82	20503	1839	16	290	1	0	0	logfile

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