Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KiU	9998	2024-02-20	2019-07-20	3.2	3.29	—	3.2	0.007	0.86	0.0	0.05	22.07	0.01	2.178	3.22	0.00	6.6	93.4	0.0	-3.67	0.72	0.78	2.19	3.2	0.003	0.60	0.0	0.04	23.61	0.00	2.149	9.06	1.15	5.2	94.8	0.0	-1.24	1.26	0.74	0.83	1.82	20503	1839	16	290	1	0	0	logfile
✔	6KiX	0694	2024-02-20	2019-07-20	4.1	4.17	—	4.1	0.006	0.84	0.0	0.05	22.72	0.01	2.219	3.30	0.00	8.6	91.4	0.0	-3.74	0.71	0.73	—	4.1	0.003	0.62	0.0	0.04	23.00	0.00	2.144	10.56	0.00	7.1	92.9	0.0	-1.36	0.84	0.73	0.76	—	19900	1763	15	290	1	0	0	logfile
✔	6KiV	9999	2024-02-21	2019-07-20	4.0	4.16	—	4.0	0.007	0.90	0.0	0.05	22.70	0.01	2.263	5.24	0.00	9.6	90.4	0.0	-3.80	0.75	0.75	—	4.0	0.003	0.66	0.0	0.04	24.01	0.00	2.101	12.11	3.07	6.2	93.8	0.0	-1.49	0.83	0.77	0.78	—	20719	1865	16	290	1	0	0	logfile
✔	6PV8	20488	2024-02-17	2019-07-19	3.87	4.04	3.94	4.0	0.006	1.07	1.0	0.07	14.13	0.01	2.057	5.07	0.69	4.9	95.1	0.0	-2.83	0.70	0.79	2.52	4.0	0.003	0.70	0.0	0.04	14.68	0.00	2.145	8.52	3.82	4.2	95.8	0.0	-0.08	1.13	0.72	0.82	2.02	20051	2379	28	0	57	8	0	logfile
✔	6KiQ	9997	2024-02-16	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.20	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.004	0.80	0.0	0.04	17.66	0.01	1.970	12.46	4.68	12.1	87.3	0.6	-2.78	1.14	0.63	0.75	1.04	15093	968	3	0	0	0	7444	logfile
✔	6Kio	9996	2024-02-16	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.01	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.73	0.0	0.04	17.25	0.00	1.970	12.13	2.04	7.8	91.8	0.4	-1.24	1.67	0.65	0.78	1.27	15091	968	3	0	0	0	7442	logfile
✔	6PV7	20487	2024-02-17	2019-07-19	3.34	3.54	3.37	3.5	0.007	1.12	0.0	0.07	13.86	0.01	1.952	5.21	0.64	5.0	95.0	0.0	-2.91	0.75	0.83	3.22	3.5	0.003	0.63	0.0	0.04	14.24	0.00	2.217	6.38	3.40	3.1	96.9	0.0	0.56	1.25	0.73	0.86	2.58	20048	2379	28	0	58	8	0	logfile
✔	6KiF	9994	2024-02-23	2019-07-18	3.3	3.42	—	3.3	0.010	1.31	0.0	0.06	19.92	0.01	2.205	9.06	0.03	2.9	97.1	0.0	-2.65	0.72	0.74	2.52	3.3	0.004	0.66	3.0	0.04	18.45	0.00	1.542	19.13	2.78	3.7	96.3	0.0	0.58	0.77	0.78	0.84	2.15	144312	13395	114	0	843	54	0	logfile
✔	6PUU	20482	2024-02-23	2019-07-18	3.7	4.09	—	3.7	0.006	0.96	0.0	0.05	15.26	0.01	2.302	5.07	1.13	5.4	94.4	0.2	-3.50	0.75	0.84	1.62	3.7	0.002	0.59	0.0	0.04	15.19	0.00	2.195	6.70	2.95	4.9	95.0	0.1	0.35	0.43	0.75	0.83	1.43	38492	5236	8	0	8	0	0	logfile
✔	6PUo	20478	2024-02-23	2019-07-18	3.3	3.94	—	3.6	0.007	0.90	0.0	0.05	13.53	0.01	2.305	5.30	0.35	7.4	92.5	0.2	-3.47	0.74	0.80	2.49	3.5	0.002	0.61	0.0	0.04	14.26	0.00	2.240	6.70	1.93	6.3	93.6	0.1	0.31	1.07	0.77	0.86	2.29	37804	5208	4	0	0	0	0	logfile
✔	6KiG	9995	2024-02-22	2019-07-18	2.9	2.98	—	2.9	0.009	1.25	0.0	0.06	20.73	0.01	2.255	8.20	0.03	2.9	97.1	0.0	-2.57	0.69	0.74	2.49	2.9	0.005	0.74	5.0	0.05	19.49	0.01	1.247	18.58	3.24	4.0	96.0	0.0	0.13	1.28	0.74	0.80	2.39	143022	12888	108	0	846	54	0	logfile
✔	6PUS	20480	2024-02-23	2019-07-18	3.7	4.57	—	3.8	0.009	1.11	0.0	0.06	15.68	0.01	2.208	9.08	1.64	7.9	91.6	0.5	-3.61	0.75	0.84	1.56	3.8	0.004	0.61	0.0	0.04	14.87	0.00	2.184	10.46	3.53	7.3	92.7	0.1	0.02	0.37	0.75	0.84	1.74	37380	5224	8	0	12	0	0	logfile
✔	6PUR	20479	2024-02-23	2019-07-18	4.4	5.34	—	4.1	0.008	1.07	0.0	0.06	15.80	0.01	2.255	9.87	1.66	7.9	91.6	0.5	-3.61	0.74	0.81	—	4.1	0.003	0.64	0.0	0.04	13.30	0.00	2.168	13.01	0.00	7.5	92.5	0.0	0.17	0.56	0.74	0.84	—	37268	5224	8	0	8	0	0	logfile
✔	6KHi	9989	2024-02-22	2019-07-15	3.0	3.34	—	3.3	0.008	1.25	0.0	0.09	17.45	0.01	2.257	7.33	0.27	8.9	91.0	0.0	-4.35	0.73	0.84	2.98	3.3	0.005	0.72	0.0	0.04	16.73	0.00	2.135	13.22	2.82	9.0	91.0	0.0	-0.61	1.13	0.74	0.87	2.75	32635	4095	29	0	19	0	0	logfile
✔	6KHJ	9990	2024-02-21	2019-07-15	3.0	3.14	—	3.1	0.009	1.30	0.0	0.06	17.68	0.01	2.258	6.87	0.41	7.8	92.1	0.0	-4.07	0.73	0.86	3.41	3.1	0.003	0.75	1.0	0.04	16.55	0.00	2.102	12.36	2.38	7.6	92.4	0.0	0.04	1.13	0.73	0.87	2.53	31027	3877	26	0	20	0	0	logfile
✔	6PT0	20470	2024-02-14	2019-07-14	3.2	3.63	—	3.5	0.006	0.89	0.0	0.06	10.15	0.01	2.222	5.12	0.00	2.8	97.2	0.0	-2.48	0.67	0.75	1.99	3.5	0.004	0.66	0.0	0.04	14.17	0.00	2.095	14.09	2.94	3.1	96.9	0.0	0.41	1.67	0.70	0.81	2.02	10232	1284	6	0	9	0	0	logfile
✔	6PSY	20468	2024-02-15	2019-07-14	2.8	2.96	—	3.0	0.007	1.08	0.0	0.06	11.33	0.01	2.256	8.79	0.40	8.3	91.7	0.0	-4.87	0.59	0.74	3.67	3.0	0.005	0.97	1.0	0.04	16.14	0.00	2.171	15.72	2.85	7.3	92.7	0.0	-1.26	1.24	0.64	0.80	2.97	11540	1429	4	0	4	0	0	logfile
✔	6PSX	20467	2024-02-15	2019-07-14	3.3	3.50	—	3.4	0.006	1.07	0.0	0.06	11.06	0.01	2.243	8.08	0.41	8.5	91.5	0.0	-5.01	0.64	0.74	2.94	3.4	0.005	0.71	0.0	0.05	14.86	0.00	2.088	14.80	3.05	8.6	91.4	0.0	-1.68	1.31	0.68	0.80	2.46	11074	1372	4	0	4	0	0	logfile
✔	6PSS	20462	2024-02-22	2019-07-13	3.5	2.98	—	3.2	0.008	1.08	0.0	0.06	20.99	0.01	1.663	9.14	11.08	7.7	92.1	0.2	-4.70	0.62	0.74	1.37	3.2	0.005	0.73	0.0	0.04	20.64	0.00	1.929	16.58	7.16	8.3	91.6	0.1	-1.69	1.95	0.62	0.73	1.16	32361	3905	12	86	4	0	0	logfile
✔	6PSR	20461	2024-02-21	2019-07-13	3.4	3.14	—	3.3	0.009	0.89	0.0	0.05	19.81	0.00	1.411	37.88	10.51	10.3	89.6	0.1	-4.05	0.70	0.80	1.76	3.3	0.003	0.66	0.0	0.04	19.69	0.00	2.021	12.93	5.53	6.6	93.3	0.1	-1.31	0.60	0.71	0.81	1.53	32186	3902	14	71	8	0	0	logfile

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