Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PSQ	20460	2024-02-22	2019-07-13	3.4	3.24	—	3.3	0.011	1.00	2.0	0.05	20.45	0.01	1.995	40.42	13.45	10.2	89.5	0.3	-4.43	0.73	0.80	1.57	3.3	0.003	0.65	0.0	0.04	19.87	0.00	2.006	12.54	4.27	6.5	93.3	0.1	-0.82	1.46	0.73	0.82	1.31	32777	3904	13	100	8	0	0	logfile
✔	6PSS	20462	2024-02-22	2019-07-13	3.5	2.98	—	3.2	0.008	1.08	0.0	0.06	20.99	0.01	1.663	9.14	11.08	7.7	92.1	0.2	-4.70	0.62	0.74	1.37	3.2	0.005	0.73	0.0	0.04	20.64	0.00	1.929	16.58	7.16	8.3	91.6	0.1	-1.69	1.95	0.62	0.73	1.16	32361	3905	12	86	4	0	0	logfile
✔	6PSV	20465	2024-02-22	2019-07-13	3.5	3.19	—	3.3	0.011	1.00	0.0	0.05	20.03	0.01	1.959	40.32	11.23	11.1	88.7	0.1	-4.43	0.67	0.79	1.74	3.4	0.004	0.70	0.0	0.04	19.95	0.00	1.983	12.86	6.30	7.1	92.8	0.1	-1.22	0.63	0.66	0.78	1.19	32331	3830	14	105	8	0	0	logfile
✔	6PSW	20466	2024-02-22	2019-07-13	3.7	3.46	—	3.5	0.008	0.89	0.0	0.05	18.87	0.00	1.987	42.40	0.40	11.4	88.4	0.2	-4.03	0.69	0.78	1.68	3.5	0.003	0.69	0.0	0.04	19.65	0.00	2.038	14.99	3.24	7.5	92.4	0.1	-1.13	0.69	0.69	0.78	1.16	32695	3831	13	124	6	0	0	logfile
✔	6PSU	20464	2024-02-21	2019-07-13	3.9	3.15	—	3.1	0.009	0.94	0.0	0.05	17.89	0.00	1.805	47.11	0.24	12.5	87.5	0.1	-4.34	0.64	0.74	1.62	3.5	0.004	0.69	0.0	0.04	19.32	0.00	1.978	16.42	3.29	7.2	92.7	0.0	-1.33	1.49	0.64	0.73	1.01	32167	3877	14	79	8	0	0	logfile
✔	6PSN	20459	2024-02-22	2019-07-12	4.6	4.92	—	4.6	0.006	0.93	0.0	0.06	9.42	0.01	2.107	7.18	0.65	3.2	96.8	0.0	-1.98	0.81	0.80	—	4.6	0.003	0.62	0.0	0.04	10.42	0.00	2.077	14.26	0.00	4.7	95.3	0.0	-0.13	2.25	0.81	0.78	—	32830	4154	15	0	14	0	0	logfile
✔	6S91	10126	2024-02-14	2019-07-11	2.68	3.17	2.85	3.0	0.006	0.80	0.0	0.05	15.52	0.00	1.696	20.08	0.09	13.5	86.3	0.2	-4.91	0.69	0.74	2.17	3.1	0.004	0.79	0.0	0.05	17.49	0.00	2.006	17.58	3.55	10.7	89.2	0.0	-2.78	0.66	0.66	0.81	1.87	62045	7488	36	84	6	0	0	logfile
✔	6KG7	9975	2024-02-24	2019-07-11	3.8	4.04	—	3.8	0.004	0.60	0.0	0.04	13.56	0.00	2.223	9.26	0.00	5.7	94.3	0.0	-1.77	0.76	0.83	2.35	3.8	0.002	0.59	0.0	0.04	14.26	0.00	2.110	8.75	1.05	4.8	95.2	0.0	0.91	0.41	0.76	0.83	1.85	44892	5451	6	0	12	0	0	logfile
✔	6S8J	10124	2024-02-15	2019-07-10	2.91	3.06	3.00	3.0	0.006	1.00	0.0	0.06	13.16	0.01	2.185	7.67	3.27	3.3	96.5	0.2	-0.67	0.74	0.84	4.26	3.0	0.005	0.75	0.0	0.05	15.55	0.00	2.154	5.58	3.35	3.3	96.7	0.0	-0.58	1.00	0.77	0.88	3.91	12391	1584	27	0	6	163	0	logfile
✔	6PQV	20454	2024-02-23	2019-07-10	3.3	3.54	—	3.4	0.009	0.93	1.0	0.05	14.82	0.00	1.757	4.51	2.58	3.6	96.3	0.0	-2.75	0.75	0.86	3.27	3.4	0.005	0.74	0.0	0.04	15.97	0.00	1.978	9.17	2.45	2.2	97.8	0.0	0.78	1.27	0.77	0.89	2.50	36971	4851	28	0	12	0	0	logfile
✔	6PR5	20457	2024-02-14	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.94	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	3.6	0.003	0.61	0.0	0.04	23.34	0.00	1.670	10.75	2.82	4.5	95.5	0.0	0.58	1.14	0.75	0.82	2.47	10194	960	10	124	6	0	0	logfile
✔	6PQY	20456	2024-02-14	2019-07-10	4.2	5.01	—	4.8	0.007	0.99	0.0	0.06	22.03	0.01	2.225	25.09	0.49	6.8	92.5	0.7	-4.46	0.80	0.78	—	4.8	0.003	0.65	0.0	0.04	21.26	0.00	2.218	15.36	0.12	6.2	93.8	0.0	-0.66	1.68	0.78	0.75	—	8690	920	6	64	0	0	0	logfile
✔	6PQX	20455	2024-02-14	2019-07-10	4.6	4.84	—	4.7	0.006	0.99	0.0	0.06	23.41	0.01	2.222	15.96	2.35	5.2	94.1	0.6	-3.41	0.78	0.79	—	4.7	0.003	0.66	0.0	0.04	23.02	0.00	2.143	16.43	0.00	6.5	93.3	0.2	-1.63	1.65	0.77	0.77	—	10116	960	10	120	4	0	0	logfile
✔	6PQU	20453	2024-02-14	2019-07-10	3.3	3.76	—	3.7	0.008	0.90	2.0	0.05	23.51	0.00	1.970	23.39	1.21	2.4	97.4	0.2	-4.67	0.69	0.72	1.88	3.7	0.003	0.64	0.0	0.04	23.36	0.00	1.986	13.30	2.17	6.4	93.4	0.2	-0.55	0.52	0.67	0.71	1.19	10004	936	10	124	6	0	0	logfile
✔	6S8G	10121	2024-02-15	2019-07-10	3.5	3.70	—	3.7	0.010	1.32	0.0	0.06	18.45	0.01	2.294	5.75	3.86	14.7	85.2	0.1	-6.67	0.67	0.82	1.81	3.7	0.003	0.76	0.0	0.04	17.79	0.00	2.148	9.28	2.62	10.9	89.1	0.0	-2.70	1.22	0.65	0.81	1.59	7530	957	7	0	3	0	0	logfile
✔	6S8i	10123	2024-02-15	2019-07-10	2.99	3.15	3.13	3.1	0.007	0.95	0.0	0.07	14.06	0.01	2.171	10.59	8.13	2.9	97.1	0.0	-0.23	0.70	0.81	3.74	3.1	0.003	0.63	0.0	0.05	15.74	0.00	2.203	7.22	2.55	3.6	96.4	0.0	-0.02	1.79	0.70	0.83	2.99	12066	1566	15	0	6	0	0	logfile
✔	6PQP	20450	2024-02-18	2019-07-09	3.06	3.46	3.03	3.4	0.012	1.29	0.0	0.23	21.82	0.01	2.132	8.72	0.19	4.3	95.7	0.0	-3.28	0.74	0.82	3.00	3.4	0.002	0.58	0.0	0.04	17.62	0.00	2.157	6.06	1.92	2.5	97.5	0.0	1.87	2.26	0.74	0.85	2.20	20492	2460	12	0	36	0	0	logfile
✔	6S8E	10119	2024-02-14	2019-07-09	3.1	4.08	3.34	3.7	0.006	0.75	0.0	0.05	15.64	0.00	2.055	19.34	0.16	14.8	84.9	0.2	-4.68	0.79	0.77	1.91	3.8	0.004	0.84	0.0	0.05	17.39	0.00	2.059	21.96	4.53	12.0	88.0	0.0	-2.67	1.63	0.76	0.81	1.41	62224	7502	36	91	1	0	0	logfile
✔	6S8D	10118	2024-02-15	2019-07-09	3.49	3.72	3.62	3.7	0.006	0.85	0.0	0.09	13.95	0.01	2.255	10.26	2.56	4.2	95.6	0.2	-0.87	0.78	0.81	3.80	3.7	0.004	0.71	0.0	0.04	15.23	0.00	2.196	8.52	2.87	5.1	94.9	0.0	-0.42	0.53	0.79	0.87	3.20	12267	1584	15	0	6	0	0	logfile
✔	6PQR	20452	2024-02-14	2019-07-09	3.4	3.86	—	3.8	0.009	0.84	0.0	0.05	22.10	0.00	2.081	16.18	0.24	3.3	96.7	0.0	-3.38	0.74	0.80	2.06	3.8	0.003	0.59	0.0	0.04	22.00	0.00	2.066	13.20	1.57	3.9	96.1	0.0	-0.77	0.49	0.70	0.78	1.66	9266	936	8	88	6	0	0	logfile

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