Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S8B	10117	2024-02-14	2019-07-09	2.41	3.08	2.65	3.0	0.006	0.79	0.0	0.05	15.09	0.00	1.698	17.72	0.19	15.0	84.6	0.4	-4.57	0.72	0.78	2.94	3.0	0.003	0.77	0.0	0.05	17.22	0.00	2.098	14.85	2.60	11.8	88.1	0.1	-2.50	1.35	0.67	0.83	2.44	62151	7479	35	93	6	0	0	logfile
✔	6S8F	10120	2024-02-22	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.79	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.90	46.0	0.11	19.41	0.02	1.505	190.57	33.05	54.0	43.4	2.6	-8.00	2.40	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	6S8D	10118	2024-02-15	2019-07-09	3.49	3.72	3.62	3.7	0.006	0.85	0.0	0.09	13.95	0.01	2.255	10.26	2.56	4.2	95.6	0.2	-0.87	0.78	0.81	3.80	3.7	0.004	0.71	0.0	0.04	15.23	0.00	2.196	8.52	2.87	5.1	94.9	0.0	-0.42	0.53	0.79	0.87	3.20	12267	1584	15	0	6	0	0	logfile
✔	6PQo	20449	2024-02-18	2019-07-09	2.88	3.25	2.81	3.2	0.012	1.41	0.0	0.08	18.19	0.03	2.222	7.38	0.58	3.5	96.5	0.0	-2.93	0.57	0.72	3.08	3.2	0.004	0.60	0.0	0.04	17.78	0.00	2.148	5.08	2.82	3.0	97.0	0.0	1.42	1.27	0.69	0.84	2.24	20312	2448	12	0	36	0	0	logfile
✔	6PPU	20447	2024-02-14	2019-07-08	3.5	3.56	—	3.5	0.009	1.18	2.0	0.07	15.18	0.01	1.855	10.41	3.10	7.9	92.1	0.0	-5.80	0.76	0.84	3.72	3.5	0.003	0.65	0.0	0.04	17.08	0.00	2.168	5.46	2.86	4.8	95.2	0.0	-1.94	0.59	0.77	0.84	2.63	10104	1302	4	29	53	0	0	logfile
✔	6PPR	20446	2024-02-15	2019-07-08	3.5	3.62	—	3.6	0.009	1.16	0.0	0.06	15.43	0.01	2.032	11.04	1.28	10.1	89.8	0.1	-6.00	0.77	0.84	3.29	3.6	0.003	0.69	0.0	0.04	17.08	0.00	2.046	5.15	2.36	5.5	94.5	0.0	-1.76	1.08	0.77	0.84	2.53	11995	1594	4	32	2	0	0	logfile
✔	6PPL	20442	2024-02-14	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	16.58	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	3.1	0.004	0.62	0.0	0.04	16.58	0.00	2.125	6.83	1.62	2.7	97.3	0.0	-0.62	0.95	0.73	0.87	3.37	8155	980	6	0	4	0	0	logfile
✔	6S85	10116	2024-02-17	2019-07-08	4.2	4.30	—	4.2	0.008	1.01	3.0	0.06	19.28	0.01	1.775	18.62	1.03	7.8	91.9	0.3	-3.59	0.84	0.82	—	4.1	0.004	0.65	0.0	0.04	18.05	0.00	1.895	14.80	0.08	5.7	94.3	0.1	-0.63	1.03	0.84	0.82	—	13018	1486	10	63	8	0	0	logfile
✔	6KFK	9974	2024-02-15	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.91	0.0	0.05	12.96	0.00	2.067	21.77	0.00	7.8	91.3	0.9	-1.51	2.73	0.24	0.31	—	65076	8844	22	0	0	0	0	logfile
✔	6PPi	20437	2024-02-23	2019-07-07	4.7	4.29	—	4.1	0.003	0.71	0.0	0.05	9.20	0.01	2.302	4.20	0.00	4.9	95.1	0.0	-4.79	0.55	0.78	—	4.1	0.003	0.72	0.0	0.04	12.95	0.01	2.109	20.47	0.00	4.9	95.1	0.0	-1.60	1.14	0.58	0.81	—	39504	4956	12	0	0	0	0	logfile
✔	6KFH	9973	2024-02-18	2019-07-07	3.6	3.70	—	3.7	0.007	0.73	0.0	0.05	14.75	0.00	2.255	9.85	0.00	12.3	87.7	0.0	-3.15	0.66	0.82	0.94	3.7	0.003	0.68	0.0	0.04	17.57	0.00	2.226	9.65	3.67	8.6	91.4	0.0	0.12	0.61	0.62	0.82	1.09	20840	2544	8	0	0	0	0	logfile
✔	6KFG	9972	2024-02-18	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.148	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.006	0.81	0.0	0.05	16.87	0.00	2.115	13.92	6.15	9.2	90.8	0.0	-0.58	1.35	0.62	0.81	1.59	22264	2704	8	0	0	0	0	logfile
✔	6KFF	9971	2024-02-18	2019-07-07	3.8	3.93	—	3.9	0.004	0.60	0.0	0.04	15.08	0.00	2.182	8.35	0.35	9.2	90.8	0.0	-2.57	0.67	0.82	1.08	3.9	0.003	0.67	0.0	0.04	17.24	0.00	2.203	10.04	5.10	8.6	91.4	0.0	0.10	0.54	0.64	0.82	1.05	21192	2576	8	0	0	0	0	logfile
✔	6PPJ	20440	2024-02-15	2019-07-07	3.5	3.54	—	3.5	0.009	1.15	2.0	0.06	11.63	0.01	2.202	9.16	1.82	7.3	92.7	0.0	-5.82	0.81	0.86	3.88	3.5	0.005	0.73	0.0	0.04	13.95	0.00	2.185	6.01	4.64	7.5	92.5	0.1	-1.85	1.08	0.83	0.87	2.56	12004	1672	2	0	79	0	0	logfile
✔	6PPK	20441	2024-02-19	2019-07-07	4.4	4.58	—	4.5	0.008	1.08	15.0	0.05	26.18	0.01	1.150	22.61	8.03	11.8	87.5	0.7	-4.28	0.88	0.83	—	4.4	0.005	0.73	0.0	0.04	25.41	0.01	2.054	25.67	0.00	10.7	89.2	0.1	-2.31	1.58	0.88	0.84	—	80451	2684	24	2770	1	0	0	logfile
✔	6PPB	20432	2024-02-14	2019-07-06	4.3	4.18	3.99	4.2	0.006	0.97	0.0	0.05	10.22	0.01	2.200	4.21	0.31	4.9	95.0	0.1	-4.52	0.47	0.79	—	4.1	0.003	0.72	0.0	0.04	13.51	0.00	2.085	10.47	0.06	4.8	95.2	0.0	-1.44	1.37	0.49	0.82	—	62671	7953	19	0	0	0	0	logfile
✔	6PPH	20436	2024-02-18	2019-07-06	3.8	3.69	3.57	3.7	0.007	1.07	1.0	0.06	10.48	0.01	2.230	4.79	0.49	4.9	95.0	0.2	-4.52	0.48	0.79	2.26	3.6	0.003	0.71	0.0	0.04	15.87	0.00	1.852	10.09	3.49	4.2	95.8	0.0	-1.27	1.34	0.51	0.82	1.91	73502	9326	21	0	0	0	0	logfile
✔	6PPF	20435	2024-02-18	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	25.55	0.00	1.152	14.99	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.006	0.78	0.0	0.04	25.03	0.01	1.960	12.30	7.36	10.5	89.4	0.1	-2.99	1.24	0.82	0.83	1.55	71835	2101	22	2583	0	13	0	logfile
✔	6PPD	20433	2024-02-17	2019-07-06	3.7	3.60	3.55	3.6	0.008	1.10	1.0	0.06	10.72	0.01	2.203	4.79	0.64	5.4	94.4	0.2	-4.49	0.48	0.79	2.40	3.6	0.003	0.69	0.0	0.04	16.02	0.00	2.087	9.98	4.00	4.8	95.1	0.0	-1.51	1.34	0.51	0.82	2.01	68769	8728	16	0	0	0	0	logfile
✔	6KF3	9960	2024-02-20	2019-07-06	3.9	4.00	3.77	4.0	0.008	1.33	1.0	0.07	12.71	0.01	2.102	4.54	4.74	13.7	85.5	0.8	-5.00	0.71	0.74	1.75	4.0	0.003	0.79	0.0	0.05	15.78	0.01	1.982	11.22	3.55	11.6	88.3	0.1	-2.44	2.20	0.72	0.76	1.16	26375	3297	15	0	6	0	0	logfile

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