Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DWB	8924	2024-02-17	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.002	0.45	0.0	0.03	13.27	0.00	2.167	4.19	0.81	2.9	97.1	0.0	4.90	1.14	0.75	0.89	2.86	18360	2340	30	0	0	0	0	logfile
✔	6DVY	8920	2024-02-18	2018-06-25	4.0	4.10	—	4.0	0.008	1.25	0.0	0.06	12.66	0.01	1.762	8.98	0.88	13.0	86.2	0.8	-5.79	0.71	0.79	—	4.0	0.004	0.98	0.0	0.04	16.47	0.00	2.153	17.92	2.85	12.1	87.6	0.3	-1.19	1.08	0.71	0.79	—	21008	2564	8	0	8	0	0	logfile
✔	6GWT	0076	2024-02-29	2018-06-25	3.8	4.53	—	4.2	0.004	0.84	5.0	0.04	22.39	0.01	1.272	6.02	0.19	8.2	91.3	0.5	-4.05	0.85	0.83	0.58	4.2	0.005	0.74	0.0	0.04	23.43	0.01	1.975	25.61	6.83	11.0	88.6	0.4	-1.97	1.77	0.87	0.88	0.79	151484	6670	59	4639	1	0	0	logfile
✔	6DVZ	8921	2024-02-18	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.69	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.78	0.0	0.04	13.83	0.00	2.186	11.18	0.00	13.5	86.2	0.4	-2.01	0.87	0.69	0.79	—	20976	2572	8	0	12	0	0	logfile
✔	6DVW	8919	2024-02-18	2018-06-25	4.3	4.35	—	4.3	0.008	1.19	0.0	0.06	11.88	0.01	1.840	5.62	0.87	15.9	83.7	0.4	-5.79	0.68	0.80	—	4.3	0.003	0.76	0.0	0.04	13.22	0.00	2.136	10.44	0.04	13.3	86.6	0.2	-1.78	0.85	0.66	0.79	—	21004	2576	4	0	0	0	0	logfile
✔	6DUZ	8913	2024-02-18	2018-06-22	3.6	3.88	—	3.8	0.006	0.97	0.0	0.05	11.01	0.01	1.677	4.59	4.35	3.2	96.8	0.0	-4.32	0.76	0.82	2.31	3.8	0.003	0.70	2.0	0.04	16.40	0.00	2.012	8.62	4.27	2.7	97.3	0.0	-0.22	1.85	0.68	0.86	1.65	72744	9072	48	0	0	0	0	logfile
✔	6DV3	8914	2024-02-14	2018-06-22	4.1	4.29	—	4.3	0.008	1.19	0.0	0.06	12.83	0.01	1.837	8.62	5.67	5.2	94.8	0.0	-4.68	0.63	0.69	—	4.3	0.003	0.73	0.0	0.05	12.70	0.00	2.020	11.34	0.03	4.1	95.9	0.0	-1.72	0.85	0.66	0.83	—	57975	7500	15	0	0	0	0	logfile
✔	6DV6	8915	2024-02-24	2018-06-22	3.9	4.12	—	4.2	0.010	1.32	0.0	0.07	14.14	0.01	1.835	8.19	7.64	6.5	93.5	0.0	-4.93	0.71	0.80	1.58	4.2	0.004	0.83	0.0	0.05	16.20	0.00	2.072	11.95	8.93	5.4	94.6	0.0	-2.06	1.87	0.67	0.86	1.29	40950	5370	15	0	0	0	0	logfile
✔	6DU8	8912	2024-02-15	2018-06-20	3.11	3.84	—	3.8	0.007	1.14	0.0	0.08	12.52	0.01	2.046	7.99	0.89	8.8	91.2	0.0	-4.81	0.39	0.59	3.01	3.8	0.003	0.76	0.0	0.05	15.34	0.00	2.108	9.90	3.11	7.2	92.8	0.0	-1.62	0.57	0.40	0.61	2.47	13380	1684	8	0	4	0	0	logfile
✔	6GVE	0071	2024-02-22	2018-06-20	3.9	4.13	3.97	4.0	0.010	0.99	0.0	0.06	10.44	0.01	2.133	7.04	0.11	4.2	95.8	0.0	-3.72	0.77	0.75	1.99	4.0	0.003	0.68	0.0	0.05	14.51	0.00	2.123	14.15	3.30	4.1	95.9	0.0	-0.51	1.29	0.81	0.82	1.62	33412	4272	24	0	8	0	0	logfile
✔	6GTE	0063	2024-02-15	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	17.33	0.01	2.232	8.08	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.004	0.66	0.0	0.04	17.49	0.00	2.118	15.42	0.00	9.1	90.9	0.0	-3.23	0.78	0.73	0.71	—	10872	1274	4	67	0	0	0	logfile
✔	6GTD	0062	2024-02-13	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	23.09	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.009	1.12	0.0	0.08	22.54	0.01	1.891	37.73	0.00	26.1	73.8	0.1	-3.90	0.98	0.79	0.68	—	6456	1269	4	66	0	0	0	logfile
✔	6GTC	0061	2024-02-15	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	16.56	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.003	0.70	0.0	0.04	19.10	0.00	2.119	14.35	3.61	7.5	92.5	0.0	-2.76	0.77	0.72	0.70	1.50	11931	1280	4	65	0	0	0	logfile
✔	6GTG	0065	2024-02-15	2018-06-18	3.27	3.35	—	3.3	0.009	1.07	0.0	0.06	16.10	0.01	2.051	6.65	0.69	14.5	85.5	0.0	-5.96	0.68	0.75	2.90	3.3	0.004	0.65	0.0	0.04	18.18	0.00	2.036	14.09	3.20	11.2	88.8	0.0	-3.26	1.13	0.70	0.77	2.21	12538	1298	8	91	4	3	0	logfile
✔	6GTF	0064	2024-02-15	2018-06-18	3.63	3.94	—	3.8	0.010	1.17	0.0	0.07	17.17	0.01	2.030	10.45	0.43	15.5	84.5	0.0	-5.84	0.72	0.64	1.89	3.8	0.003	0.69	0.0	0.04	18.76	0.00	2.167	15.23	2.16	7.1	92.9	0.0	-3.17	1.42	0.74	0.64	1.54	10871	1280	4	66	0	0	0	logfile
✔	6GSi	0056	2024-02-28	2018-06-14	3.75	4.09	—	4.0	0.011	0.92	0.0	0.06	9.92	0.01	1.076	9.23	0.71	15.3	84.5	0.2	-5.00	0.55	0.81	2.93	4.0	0.003	0.64	0.0	0.04	13.34	0.00	1.865	11.53	1.50	9.4	90.5	0.1	-2.58	0.94	0.57	0.84	2.80	150378	9831	48	0	12	0	74247	logfile
✔	6DSo	8910	2024-02-13	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.4	0.006	0.66	0.0	0.04	14.79	0.00	2.153	9.25	1.91	9.0	91.0	0.0	-4.49	0.63	0.50	0.83	5.42	6588	828	12	0	0	0	0	logfile
✔	6DT0	8911	2024-02-15	2018-06-14	3.7	3.89	3.68	3.8	0.005	0.72	0.0	0.04	8.50	0.01	2.087	1.74	0.00	3.1	96.9	0.0	-1.45	0.69	0.77	1.54	3.8	0.004	0.57	0.0	0.04	13.79	0.00	1.930	5.52	2.41	4.3	95.7	0.0	3.35	1.08	0.70	0.80	2.71	13759	944	5	0	1	0	6626	logfile
✔	6GSA	0051	2024-02-16	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.69	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.004	0.76	0.0	0.04	12.40	0.00	2.126	23.17	0.00	5.7	94.3	0.0	-0.41	1.23	0.83	0.75	—	16272	1999	5	0	0	0	0	logfile
✔	6DRV	8908	2024-02-22	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.44	0.0	0.08	12.56	0.02	2.116	3.99	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.004	0.70	0.0	0.05	15.95	0.00	2.070	6.15	1.23	2.8	97.2	0.0	0.31	1.45	0.74	0.89	5.92	32888	4096	4	0	0	0	0	logfile

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