Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GSA	0051	2024-02-16	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.69	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.004	0.76	0.0	0.04	12.40	0.00	2.126	23.17	0.00	5.7	94.3	0.0	-0.41	1.23	0.83	0.75	—	16272	1999	5	0	0	0	0	logfile
✔	6DRK	8901	2024-02-22	2018-06-12	3.8	4.29	—	4.2	0.010	1.18	4.0	0.07	9.74	0.01	2.150	5.96	0.36	5.9	94.1	0.0	-3.07	0.64	0.74	1.96	4.2	0.002	0.63	0.0	0.04	13.21	0.00	2.169	4.74	3.33	4.7	95.3	0.0	0.80	0.83	0.66	0.77	1.01	33120	5060	4	0	0	0	0	logfile
✔	6DRJ	7999	2024-02-22	2018-06-12	3.3	3.80	—	3.7	0.007	1.13	8.0	0.07	11.74	0.01	2.093	5.57	0.14	4.4	95.6	0.0	-3.18	0.67	0.79	1.95	3.7	0.002	0.59	0.0	0.04	14.20	0.00	2.165	4.34	2.47	3.3	96.7	0.0	0.33	1.21	0.68	0.82	1.69	35516	5064	8	0	8	0	0	logfile
✔	6DRD	7997	2024-02-20	2018-06-11	3.9	3.90	—	3.8	0.010	1.13	0.0	0.06	10.41	0.01	2.169	7.47	0.68	11.1	88.7	0.1	-5.06	0.75	0.76	2.60	3.9	0.003	0.70	0.0	0.05	14.96	0.00	2.189	12.27	3.34	7.8	92.1	0.0	-2.44	0.78	0.77	0.80	1.77	26708	3304	17	0	50	0	0	logfile
✔	6DPV	7974	2024-02-24	2018-06-09	3.3	3.44	—	3.6	0.008	1.46	6.0	0.08	16.61	0.01	1.972	2.29	2.21	3.4	96.6	0.0	0.41	0.65	0.82	3.14	3.5	0.003	0.64	0.0	0.04	18.09	0.00	1.989	8.39	2.97	3.2	96.8	0.0	0.97	0.79	0.63	0.85	2.96	40506	5124	24	6	12	0	0	logfile
✔	6DPW	7975	2024-02-24	2018-06-09	3.5	3.71	—	3.7	0.009	1.43	0.0	0.08	15.58	0.01	2.040	2.61	0.82	2.3	97.6	0.1	0.22	0.68	0.85	2.68	3.7	0.004	0.68	1.0	0.04	17.13	0.00	1.869	9.04	2.80	1.6	98.4	0.0	1.33	1.57	0.66	0.84	2.45	40812	5154	24	0	18	0	0	logfile
✔	6DPU	7973	2024-02-24	2018-06-09	3.1	3.21	—	3.3	0.009	1.53	6.0	0.09	16.46	0.01	1.913	1.97	3.17	2.5	97.3	0.2	-0.07	0.65	0.81	2.90	3.2	0.003	0.62	0.0	0.04	17.76	0.00	1.948	7.56	3.28	2.9	97.1	0.0	0.38	1.38	0.64	0.84	2.80	40650	5142	24	0	24	0	0	logfile
✔	6DNH	7112	2024-02-15	2018-06-06	3.4	3.52	—	3.5	0.010	1.08	1.0	0.06	10.64	0.01	1.258	10.88	1.10	8.5	91.2	0.3	-4.04	0.78	0.80	3.87	3.5	0.008	0.82	0.0	0.05	14.90	0.01	2.106	12.08	3.02	10.2	89.7	0.1	-2.14	1.68	0.79	0.86	3.34	13442	1670	5	7	3	0	0	logfile
✔	6DMR	7965	2024-02-17	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.75	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.004	0.65	0.0	0.04	14.85	0.00	2.188	7.34	1.81	4.2	95.8	0.0	-0.43	1.74	0.75	0.87	1.32	19412	2424	4	0	0	0	0	logfile
✔	6DMW	7967	2024-02-18	2018-06-05	4.4	4.49	—	4.4	0.006	1.02	0.0	0.05	11.36	0.01	2.253	6.75	0.18	4.0	96.0	0.0	-3.38	0.59	0.66	—	4.4	0.003	0.67	0.0	0.04	13.13	0.00	2.233	7.75	0.05	3.2	96.8	0.0	0.66	0.93	0.72	0.84	—	20546	2562	6	0	3	0	0	logfile
✔	6DMY	7968	2024-02-15	2018-06-05	3.6	3.77	—	3.8	0.009	1.44	0.0	0.07	15.16	0.01	1.327	15.96	3.73	11.6	87.3	1.1	-4.80	0.61	0.72	2.24	3.7	0.003	0.81	0.0	0.04	16.00	0.00	2.094	11.89	4.56	10.6	89.1	0.3	-0.42	0.96	0.64	0.77	1.53	9211	1144	5	0	12	0	0	logfile
✔	6DMo	7964	2024-02-14	2018-06-05	4.1	4.16	—	4.1	0.008	1.27	0.0	0.06	13.72	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.003	0.82	0.0	0.05	13.45	0.00	2.153	14.75	0.12	9.1	90.9	0.0	-0.52	2.93	0.58	0.72	—	7853	982	3	0	7	0	0	logfile
✔	6DM1	7961	2024-02-21	2018-06-04	4.2	4.55	—	4.4	0.013	1.19	0.0	0.10	11.07	0.01	2.171	4.38	0.60	8.4	91.2	0.4	-3.78	0.87	0.79	—	4.4	0.002	0.62	0.0	0.04	11.64	0.00	2.168	8.75	0.00	6.3	93.6	0.1	-0.24	1.04	0.89	0.82	—	31097	3941	8	0	5	0	0	logfile
✔	6DLZ	7959	2024-02-21	2018-06-04	3.9	4.42	—	4.2	0.013	1.19	0.0	0.10	10.99	0.01	2.171	4.44	0.60	8.5	91.1	0.4	-3.78	0.88	0.84	2.09	4.2	0.003	0.65	0.0	0.04	12.84	0.00	2.058	9.98	1.68	6.6	93.4	0.0	-0.02	1.34	0.89	0.84	1.70	31070	3941	8	0	4	0	0	logfile
✔	6DMB	7963	2024-02-14	2018-06-04	3.9	4.13	—	4.0	0.009	1.36	0.0	0.07	13.90	0.01	2.266	6.34	1.94	13.2	86.2	0.6	-4.55	0.61	0.78	2.39	4.1	0.004	0.86	0.0	0.05	15.39	0.01	2.208	10.87	4.25	11.5	88.5	0.0	-0.44	1.80	0.62	0.78	0.88	7945	990	3	0	9	0	0	logfile
✔	6GoV	0043	2024-02-22	2018-06-04	3.7	4.02	3.65	3.9	0.008	0.93	0.0	0.06	13.50	0.01	1.963	5.69	0.25	7.7	92.2	0.1	-3.76	0.79	0.79	1.97	3.9	0.002	0.59	0.0	0.04	15.36	0.00	2.078	8.97	1.78	4.6	95.4	0.0	-0.04	1.49	0.82	0.80	1.09	35040	4157	14	117	3	0	0	logfile
✔	6DM0	7960	2024-02-21	2018-06-04	4.4	4.97	—	4.8	0.013	1.10	0.0	0.10	10.92	0.01	2.183	4.13	0.30	8.4	91.2	0.4	-3.36	0.85	0.78	—	4.8	0.002	0.64	0.0	0.04	11.78	0.00	2.076	10.73	0.00	6.6	93.4	0.0	-0.43	1.50	0.87	0.81	—	31095	3942	8	0	5	0	0	logfile
✔	6DLU	7957	2024-02-15	2018-06-02	3.75	3.84	—	3.8	0.009	0.95	0.0	0.05	11.14	0.00	1.944	12.48	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.65	0.0	0.04	14.25	0.00	1.958	9.11	1.44	4.4	95.6	0.0	0.01	2.17	0.32	0.82	1.56	11991	1481	4	0	4	0	0	logfile
✔	6DKF	7952	2024-02-17	2018-05-29	3.7	3.47	—	3.8	0.010	0.88	0.0	0.05	8.96	0.00	1.761	11.87	0.00	3.9	96.1	0.0	-5.10	0.73	0.76	2.82	3.7	0.003	0.72	0.0	0.04	16.36	0.00	2.114	13.39	4.83	2.5	97.5	0.0	0.27	0.92	0.73	0.79	1.86	17060	2314	14	0	0	0	0	logfile
✔	6GML	0038	2024-02-24	2018-05-27	3.2	3.74	3.37	3.5	0.007	0.97	1.0	0.06	13.65	0.01	2.054	7.10	0.43	5.9	94.1	0.0	-3.52	0.73	0.68	1.81	3.5	0.003	0.66	0.0	0.04	15.93	0.00	1.979	12.55	1.60	5.1	94.9	0.0	0.19	1.47	0.80	0.83	1.86	44827	5576	28	98	111	0	0	logfile

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