Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G8F	29848	2024-02-21	2023-02-17	2.6	2.58	2.77	2.6	0.007	1.02	0.0	0.05	18.18	0.00	2.173	7.58	1.87	6.0	93.6	0.4	-0.22	0.65	0.87	4.09	2.6	0.003	0.57	0.0	0.04	16.98	0.00	2.123	5.53	3.77	4.8	94.8	0.4	0.11	0.32	0.65	0.87	3.79	30912	3928	16	0	32	0	0	logfile
✔	8G88	29843	2024-02-16	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	27.72	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.008	0.79	0.0	0.04	29.84	0.01	2.050	38.26	0.00	3.1	96.9	0.0	0.56	2.59	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	8G8G	29850	2024-02-16	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.41	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.66	0.0	0.03	28.32	0.00	2.137	11.61	0.51	2.7	97.3	0.0	1.94	1.57	0.91	0.87	1.85	14558	931	11	348	0	0	0	logfile
✔	8iFF	35415	2024-02-15	2023-02-17	3.1	3.34	3.19	3.3	0.004	0.63	0.0	0.04	18.24	0.01	2.153	9.51	0.27	5.2	94.8	0.0	-0.43	0.66	0.81	1.60	3.3	0.003	0.60	0.0	0.04	18.36	0.00	2.128	8.67	3.73	6.0	94.0	0.0	-0.33	0.35	0.64	0.81	1.54	13698	1736	4	0	2	0	0	logfile
✔	8iFG	35416	2024-02-17	2023-02-17	3.2	3.71	3.30	3.7	0.006	0.75	0.0	0.05	16.27	0.01	2.044	13.39	5.26	8.4	91.5	0.2	-2.83	0.64	0.74	2.38	3.7	0.004	0.66	0.0	0.04	17.11	0.00	2.010	9.81	2.58	6.4	93.5	0.1	0.00	1.23	0.60	0.74	1.84	19068	2338	10	0	3	1	0	logfile
✔	8iF8	35410	2024-02-14	2023-02-17	3.1	3.58	3.22	3.5	0.007	0.81	3.0	0.05	13.08	0.01	2.234	6.73	0.00	7.7	92.3	0.0	0.00	0.70	0.87	3.01	3.5	0.003	0.59	0.0	0.04	14.52	0.00	2.192	5.41	1.50	6.1	93.9	0.0	1.53	0.33	0.69	0.88	2.26	9307	1218	4	0	2	0	0	logfile
✔	8G7o	29818	2024-02-22	2023-02-16	3.4	3.73	3.51	3.6	0.003	0.57	0.0	0.05	14.09	0.00	2.133	3.99	0.00	2.2	97.8	0.0	1.72	0.69	0.85	2.60	3.6	0.002	0.51	0.0	0.04	14.55	0.00	2.206	4.45	1.07	1.7	98.3	0.0	1.61	0.39	0.68	0.86	2.22	33047	4389	21	0	7	0	0	logfile
✔	8CKV	16703	2024-02-15	2023-02-16	2.89	3.13	2.17	3.2	0.004	0.82	0.0	0.05	12.34	0.01	1.152	5.68	0.00	1.0	99.0	0.0	-0.51	0.61	0.76	4.15	3.2	0.004	0.56	0.0	0.04	16.02	0.00	2.224	7.75	1.97	1.4	98.6	0.0	1.54	0.44	0.62	0.80	4.06	9900	1272	6	0	0	0	0	logfile
✔	8CKX	16705	2024-02-15	2023-02-16	2.97	3.24	2.98	3.3	0.005	0.87	0.0	0.06	12.70	0.01	2.453	0.76	0.19	1.0	99.0	0.0	-1.11	0.60	0.76	4.18	3.3	0.003	0.52	0.0	0.04	15.49	0.00	2.204	6.77	1.13	0.6	99.4	0.0	2.37	0.50	0.61	0.78	3.54	9857	1265	6	0	0	0	0	logfile
✔	8G7J	29813	2024-02-20	2023-02-16	3.4	3.70	3.39	3.9	0.015	1.46	0.0	0.08	9.30	0.01	2.369	1.16	0.00	0.7	99.2	0.1	0.22	0.65	0.71	1.18	3.9	0.004	0.63	0.0	0.04	13.81	0.00	2.175	5.87	1.92	3.1	96.9	0.0	1.36	2.21	0.68	0.73	1.42	27461	3682	7	0	0	0	0	logfile
✔	8CKW	16704	2024-02-16	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.003	0.61	0.0	0.04	17.11	0.00	2.141	10.30	1.07	1.0	99.0	0.0	1.63	1.19	0.58	0.85	2.29	13890	1785	15	0	0	0	0	logfile
✔	8CL1	16709	2024-02-16	2023-02-16	3.35	3.67	2.87	3.6	0.008	0.93	0.0	0.06	12.18	0.01	0.393	14.11	0.54	0.0	99.1	0.9	-1.05	0.61	0.75	3.54	3.7	0.003	0.59	0.0	0.04	15.24	0.00	2.182	11.26	0.72	2.1	97.4	0.5	1.93	0.64	0.65	0.78	3.06	10494	1362	12	0	0	0	0	logfile
✔	8CLL	16717	2024-02-19	2023-02-16	3.4	3.64	3.50	3.5	0.003	0.66	0.0	0.05	12.97	0.01	1.984	2.24	0.00	2.1	97.9	0.0	-0.75	0.81	0.84	3.23	3.5	0.004	0.76	1.0	0.04	14.68	0.00	2.176	8.55	1.41	2.1	97.9	0.0	0.52	0.65	0.85	0.87	2.45	25226	3152	8	0	4	0	0	logfile
✔	8CLi	16713	2024-02-16	2023-02-16	3.2	3.42	3.34	3.3	0.004	0.72	0.0	0.05	16.63	0.01	1.973	2.62	0.00	2.4	97.6	0.0	-0.73	0.78	0.86	4.28	3.3	0.004	0.64	0.0	0.04	18.18	0.00	2.096	8.07	1.69	1.7	98.3	0.0	0.81	0.99	0.81	0.88	3.15	15955	1810	6	70	2	0	0	logfile
✔	8CL0	16708	2024-02-15	2023-02-16	3.12	3.34	3.14	3.4	0.005	0.87	0.0	0.06	12.80	0.01	2.091	3.45	0.18	0.2	99.8	0.0	-0.50	0.64	0.77	4.37	3.4	0.003	0.57	0.0	0.04	15.50	0.00	2.189	8.11	1.18	1.1	98.9	0.0	2.13	0.53	0.65	0.80	3.34	10387	1355	12	0	0	0	0	logfile
✔	8CL4	16712	2024-02-18	2023-02-16	3.14	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.53	0.78	2.49	3.6	0.004	0.65	0.0	0.04	17.39	0.00	2.196	10.01	2.75	2.0	98.0	0.0	1.37	2.42	0.55	0.82	1.17	13335	1725	15	0	0	0	0	logfile
✔	8G7L	29815	2024-02-13	2023-02-16	2.5	2.66	2.66	2.7	0.008	1.14	0.0	0.06	14.60	0.01	2.287	1.63	0.79	0.6	99.4	0.0	1.52	0.73	0.83	2.54	2.7	0.003	0.53	0.0	0.04	15.14	0.00	2.167	4.65	0.39	0.9	99.1	0.0	1.52	0.28	0.72	0.84	2.30	55510	7378	28	0	42	0	0	logfile
✔	8CL2	16710	2024-02-18	2023-02-16	3.45	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.54	0.79	2.49	3.6	0.003	0.64	0.0	0.04	17.16	0.00	2.192	9.41	1.97	2.1	97.9	0.0	1.49	2.42	0.56	0.83	1.20	13335	1725	15	0	0	0	0	logfile
✔	8CLJ	16714	2024-02-21	2023-02-16	3.2	3.42	—	3.3	0.004	0.75	0.0	0.05	16.68	0.01	1.951	2.74	0.00	2.2	97.8	0.0	-0.77	0.81	0.86	4.15	3.3	0.004	0.64	0.0	0.04	18.29	0.00	2.054	8.05	1.69	1.9	98.1	0.0	0.86	1.31	0.85	0.89	3.12	31910	3620	12	140	4	0	0	logfile
✔	8CKZ	16707	2024-02-16	2023-02-16	3.07	3.27	3.09	3.2	0.005	0.90	0.0	0.05	12.35	0.01	1.966	3.43	0.00	1.1	98.9	0.0	-1.16	0.50	0.80	4.33	3.2	0.003	0.55	0.0	0.04	15.90	0.00	2.070	7.72	2.09	0.9	99.1	0.0	1.92	1.10	0.51	0.82	3.90	13910	1800	15	0	0	0	0	logfile

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