Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CKV	16703	2024-02-15	2023-02-16	2.89	3.13	2.17	3.2	0.004	0.82	0.0	0.05	12.34	0.01	1.152	5.68	0.00	1.0	99.0	0.0	-0.51	0.61	0.76	4.15	3.2	0.004	0.56	0.0	0.04	16.02	0.00	2.224	7.75	1.97	1.4	98.6	0.0	1.54	0.44	0.62	0.80	4.06	9900	1272	6	0	0	0	0	logfile
✔	8CKX	16705	2024-02-15	2023-02-16	2.97	3.24	2.98	3.3	0.005	0.87	0.0	0.06	12.70	0.01	2.453	0.76	0.19	1.0	99.0	0.0	-1.11	0.60	0.76	4.18	3.3	0.003	0.52	0.0	0.04	15.49	0.00	2.204	6.77	1.13	0.6	99.4	0.0	2.37	0.50	0.61	0.78	3.54	9857	1265	6	0	0	0	0	logfile
✔	8CLK	16715	2024-02-15	2023-02-16	3.5	3.77	3.61	3.7	0.005	0.75	0.0	0.05	13.29	0.01	2.217	4.17	0.00	2.6	97.4	0.0	-1.42	0.76	0.77	2.16	3.7	0.003	0.75	0.0	0.04	15.72	0.00	2.047	13.01	1.67	2.0	98.0	0.0	0.22	1.20	0.76	0.75	1.69	10799	1344	4	0	0	0	0	logfile
✔	8CKZ	16707	2024-02-16	2023-02-16	3.07	3.27	3.09	3.2	0.005	0.90	0.0	0.05	12.35	0.01	1.966	3.43	0.00	1.1	98.9	0.0	-1.16	0.50	0.80	4.33	3.2	0.003	0.55	0.0	0.04	15.90	0.00	2.070	7.72	2.09	0.9	99.1	0.0	1.92	1.10	0.51	0.82	3.90	13910	1800	15	0	0	0	0	logfile
✔	8CL1	16709	2024-02-16	2023-02-16	3.35	3.67	2.87	3.6	0.008	0.93	0.0	0.06	12.18	0.01	0.393	14.11	0.54	0.0	99.1	0.9	-1.05	0.61	0.75	3.54	3.7	0.003	0.59	0.0	0.04	15.24	0.00	2.182	11.26	0.72	2.1	97.4	0.5	1.93	0.64	0.65	0.78	3.06	10494	1362	12	0	0	0	0	logfile
✔	8CL0	16708	2024-02-15	2023-02-16	3.12	3.34	3.14	3.4	0.005	0.87	0.0	0.06	12.80	0.01	2.091	3.45	0.18	0.2	99.8	0.0	-0.50	0.64	0.77	4.37	3.4	0.003	0.57	0.0	0.04	15.50	0.00	2.189	8.11	1.18	1.1	98.9	0.0	2.13	0.53	0.65	0.80	3.34	10387	1355	12	0	0	0	0	logfile
✔	8CKW	16704	2024-02-16	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.003	0.61	0.0	0.04	17.11	0.00	2.141	10.30	1.07	1.0	99.0	0.0	1.63	1.19	0.58	0.85	2.29	13890	1785	15	0	0	0	0	logfile
✔	8CL2	16710	2024-02-18	2023-02-16	3.45	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.54	0.79	2.49	3.6	0.003	0.64	0.0	0.04	17.16	0.00	2.192	9.41	1.97	2.1	97.9	0.0	1.49	2.42	0.56	0.83	1.20	13335	1725	15	0	0	0	0	logfile
✔	8G73	29795	2024-02-21	2023-02-16	2.5	2.70	2.67	2.8	0.006	0.86	2.0	0.07	14.23	0.01	1.478	20.46	1.29	3.8	96.0	0.2	-0.65	0.51	0.64	2.50	2.7	0.003	0.63	0.0	0.05	14.97	0.00	2.128	8.40	2.64	3.3	96.6	0.1	-0.22	0.62	0.63	0.85	2.90	28420	3562	20	0	47	0	0	logfile
✔	8G74	29796	2024-02-20	2023-02-16	2.5	2.71	2.66	2.8	0.006	0.86	2.0	0.06	15.49	0.01	1.439	20.53	1.20	3.4	96.4	0.2	-0.61	0.53	0.68	2.49	2.7	0.005	0.81	1.0	0.05	15.13	0.00	2.098	9.11	2.49	4.0	95.9	0.1	-0.34	0.96	0.67	0.86	2.92	27543	3447	19	0	47	0	0	logfile
✔	8G6V	29785	2024-02-15	2023-02-16	3.4	3.24	—	3.3	0.003	0.60	0.0	0.04	16.35	0.01	2.084	5.69	0.85	2.5	97.5	0.0	1.60	0.51	0.89	2.44	3.2	0.003	0.78	1.0	0.04	16.60	0.00	2.091	5.55	3.21	2.9	97.1	0.0	2.49	1.17	0.51	0.90	2.51	13736	1716	12	0	0	0	0	logfile
✔	8G75	29797	2024-02-20	2023-02-16	3.4	3.74	3.57	3.7	0.004	0.70	0.0	0.05	15.32	0.01	2.017	12.82	0.61	3.4	96.5	0.1	-0.29	0.66	0.70	1.32	3.7	0.004	0.64	0.0	0.05	15.51	0.00	2.058	9.16	2.30	4.3	95.6	0.1	-0.01	0.76	0.73	0.82	1.52	28711	3598	20	0	47	0	0	logfile
✔	8G6F	29765	2024-02-25	2023-02-15	2.58	2.79	2.70	2.7	0.004	0.51	0.0	0.04	16.10	0.01	2.197	2.66	0.51	1.8	98.2	0.0	1.59	0.82	0.91	4.61	2.7	0.006	0.60	0.0	0.05	16.70	0.00	2.166	5.30	2.02	1.7	98.3	0.0	1.52	0.22	0.83	0.92	4.63	52394	6466	60	0	4	599	0	logfile
✔	8iEK	35384	2024-02-16	2023-02-15	3.2	3.88	3.60	3.9	0.003	0.67	0.0	0.04	14.69	0.00	2.245	5.26	0.23	5.4	94.3	0.3	0.51	0.54	0.64	0.96	3.9	0.003	0.62	0.0	0.04	15.86	0.01	2.106	6.97	0.90	7.3	92.2	0.5	-0.49	0.82	0.56	0.70	1.33	16344	1036	2	0	2	0	8299	logfile
✔	8G6E	29764	2024-02-25	2023-02-15	2.18	1.87	2.24	2.0	0.006	0.64	0.0	0.15	17.26	0.00	1.943	3.00	0.63	2.0	98.0	0.0	0.88	0.69	0.85	5.05	2.0	0.005	0.67	0.0	0.05	18.07	0.00	2.130	5.32	1.72	1.9	98.1	0.0	0.95	0.39	0.70	0.85	5.08	52266	6490	62	0	6	218	0	logfile
✔	8iER	35391	2024-02-16	2023-02-15	4.87	5.08	4.32	4.9	0.002	0.53	0.0	0.04	12.91	0.00	1.978	6.35	0.00	7.4	92.3	0.3	-0.61	0.48	0.46	—	4.9	0.002	0.56	0.0	0.04	12.81	0.00	1.919	8.70	0.00	10.5	89.2	0.3	-1.03	1.27	0.52	0.56	—	15257	967	2	0	1	0	7758	logfile
✔	8iEJ	35383	2024-02-16	2023-02-15	3.12	3.65	3.13	3.1	0.006	0.64	0.0	0.04	26.50	0.00	1.421	11.02	1.32	1.9	98.1	0.0	1.90	0.90	0.86	2.06	3.1	0.003	0.62	0.0	0.04	26.73	0.00	2.122	11.80	1.92	2.8	97.2	0.0	2.10	0.45	0.90	0.88	1.33	14086	1030	15	294	4	0	0	logfile
✔	8iEM	35386	2024-02-13	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.003	0.71	0.0	0.04	17.31	0.01	2.071	9.90	3.36	8.0	92.0	0.0	-1.17	0.92	0.56	0.72	0.73	7829	1011	2	0	3	0	0	logfile
✔	8iEN	35387	2024-02-13	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	3.5	0.003	1.04	0.0	0.04	16.13	0.01	2.094	16.86	1.18	8.4	91.6	0.0	-1.45	1.69	0.35	0.28	0.69	7678	991	2	0	4	0	0	logfile
✔	8iEo	35388	2024-02-16	2023-02-15	3.78	3.89	3.63	3.9	0.004	1.20	0.0	0.04	15.04	0.00	2.029	3.19	0.11	3.8	96.2	0.0	0.87	0.58	0.64	0.53	3.9	0.002	0.84	0.0	0.04	15.74	0.00	1.948	5.47	1.25	6.7	93.3	0.0	-0.07	0.73	0.63	0.74	1.02	16260	1031	2	0	3	0	8260	logfile

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