Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iEN	35387	2024-02-13	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	3.5	0.003	1.04	0.0	0.04	16.13	0.01	2.094	16.86	1.18	8.4	91.6	0.0	-1.45	1.69	0.35	0.28	0.69	7678	991	2	0	4	0	0	logfile
✔	8iEM	35386	2024-02-13	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.003	0.71	0.0	0.04	17.31	0.01	2.071	9.90	3.36	8.0	92.0	0.0	-1.17	0.92	0.56	0.72	0.73	7829	1011	2	0	3	0	0	logfile
✔	8iEJ	35383	2024-02-16	2023-02-15	3.12	3.65	3.13	3.1	0.006	0.64	0.0	0.04	26.50	0.00	1.421	11.02	1.32	1.9	98.1	0.0	1.90	0.90	0.86	2.06	3.1	0.003	0.62	0.0	0.04	26.73	0.00	2.122	11.80	1.92	2.8	97.2	0.0	2.10	0.45	0.90	0.88	1.33	14086	1030	15	294	4	0	0	logfile
✔	8iEK	35384	2024-02-16	2023-02-15	3.2	3.88	3.60	3.9	0.003	0.67	0.0	0.04	14.69	0.00	2.245	5.26	0.23	5.4	94.3	0.3	0.51	0.54	0.64	0.96	3.9	0.003	0.62	0.0	0.04	15.86	0.01	2.106	6.97	0.90	7.3	92.2	0.5	-0.49	0.82	0.56	0.70	1.33	16344	1036	2	0	2	0	8299	logfile
✔	8iER	35391	2024-02-16	2023-02-15	4.87	5.08	4.32	4.9	0.002	0.53	0.0	0.04	12.91	0.00	1.978	6.35	0.00	7.4	92.3	0.3	-0.61	0.48	0.46	—	4.9	0.002	0.56	0.0	0.04	12.81	0.00	1.919	8.70	0.00	10.5	89.2	0.3	-1.03	1.27	0.52	0.56	—	15257	967	2	0	1	0	7758	logfile
✔	8iEo	35388	2024-02-16	2023-02-15	3.78	3.89	3.63	3.9	0.004	1.20	0.0	0.04	15.04	0.00	2.029	3.19	0.11	3.8	96.2	0.0	0.87	0.58	0.64	0.53	3.9	0.002	0.84	0.0	0.04	15.74	0.00	1.948	5.47	1.25	6.7	93.3	0.0	-0.07	0.73	0.63	0.74	1.02	16260	1031	2	0	3	0	8260	logfile
✔	8G6F	29765	2024-02-25	2023-02-15	2.58	2.79	2.70	2.7	0.004	0.51	0.0	0.04	16.10	0.01	2.197	2.66	0.51	1.8	98.2	0.0	1.59	0.82	0.91	4.61	2.7	0.006	0.60	0.0	0.05	16.70	0.00	2.166	5.30	2.02	1.7	98.3	0.0	1.52	0.22	0.83	0.92	4.63	52394	6466	60	0	4	599	0	logfile
✔	8G6E	29764	2024-02-25	2023-02-15	2.18	1.87	2.24	2.0	0.006	0.64	0.0	0.15	17.26	0.00	1.943	3.00	0.63	2.0	98.0	0.0	0.88	0.69	0.85	5.05	2.0	0.005	0.67	0.0	0.05	18.07	0.00	2.130	5.32	1.72	1.9	98.1	0.0	0.95	0.39	0.70	0.85	5.08	52266	6490	62	0	6	218	0	logfile
✔	8G5V	29756	2024-02-15	2023-02-14	3.0	2.99	4.36	3.8	0.004	0.61	0.0	0.04	12.94	0.01	2.223	7.63	0.00	2.9	97.1	0.0	2.14	0.25	0.24	0.28	3.1	0.003	0.71	0.0	0.04	16.64	0.00	2.135	10.60	1.18	2.2	97.8	0.0	1.75	2.94	0.46	0.75	1.98	13739	1718	12	0	0	0	0	logfile
✔	8CKA	16694	2024-02-24	2023-02-14	2.52	2.45	2.53	2.5	0.007	0.95	0.0	0.07	14.99	0.02	2.250	5.49	0.27	3.9	96.1	0.0	0.36	0.69	0.83	3.42	2.4	0.005	0.65	0.0	0.05	15.66	0.00	2.190	6.50	3.32	3.8	96.2	0.0	-0.46	0.32	0.69	0.83	3.83	40770	5496	12	0	0	0	0	logfile
✔	8CK0	16688	2024-02-13	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.65	0.0	0.04	17.84	0.00	2.287	11.79	3.38	3.8	96.2	0.0	2.14	0.70	0.18	0.78	1.72	3762	478	1	0	0	0	0	logfile
✔	8CK1	16689	2024-02-15	2023-02-14	3.9	3.75	3.90	3.8	0.004	0.75	0.0	0.05	16.95	0.00	2.200	15.75	0.59	8.4	91.6	0.0	-2.07	0.42	0.81	1.48	3.8	0.003	0.67	0.0	0.04	18.05	0.00	2.127	14.25	4.68	8.4	91.6	0.0	-1.64	0.53	0.42	0.81	1.62	12580	1616	6	0	0	0	0	logfile
✔	8iDN	35369	2024-02-13	2023-02-13	3.35	3.49	3.33	3.4	0.003	0.58	0.0	0.05	14.93	0.00	2.120	7.91	0.56	4.4	95.4	0.2	-0.05	0.67	0.76	2.85	3.4	0.002	0.59	0.0	0.04	14.44	0.00	2.076	8.68	3.39	4.1	95.6	0.2	-0.28	0.32	0.68	0.79	2.28	3292	419	4	0	4	0	0	logfile
✔	8iDE	35365	2024-02-14	2023-02-13	3.21	3.58	3.38	3.5	0.003	0.71	0.0	0.04	13.14	0.00	1.906	14.45	0.24	14.1	85.4	0.5	-1.37	0.75	0.77	2.17	3.4	0.005	0.76	0.0	0.05	15.46	0.00	2.184	18.58	4.45	14.5	85.0	0.4	-1.59	0.71	0.76	0.80	1.90	8393	1177	3	0	1	0	0	logfile
✔	8G5P	29752	2024-02-16	2023-02-13	2.78	3.58	2.86	3.4	0.006	1.05	0.0	0.08	17.67	0.02	2.013	8.04	2.33	7.8	92.2	0.1	-0.71	0.74	0.65	1.97	3.4	0.003	0.77	0.0	0.04	18.03	0.00	2.090	12.87	3.15	9.0	90.9	0.1	-0.80	0.58	0.76	0.77	1.85	14500	1734	5	38	0	0	0	logfile
✔	8G5N	29750	2024-02-16	2023-02-13	2.73	3.64	2.92	3.4	0.006	1.00	0.0	0.08	17.82	0.02	1.871	8.83	1.85	7.5	92.5	0.0	-0.17	0.69	0.60	1.33	3.4	0.003	0.78	0.0	0.04	18.10	0.00	2.104	13.88	3.22	9.0	90.9	0.1	-0.62	2.53	0.70	0.72	1.48	14485	1734	5	38	0	0	0	logfile
✔	8G5i	29745	2024-02-16	2023-02-13	2.75	3.37	2.79	3.1	0.004	0.80	0.0	0.04	17.63	0.01	2.085	7.69	1.33	6.8	93.1	0.1	-0.24	0.75	0.70	1.80	3.1	0.003	0.76	0.0	0.04	18.38	0.00	2.195	13.56	3.16	7.6	92.3	0.1	-0.36	0.44	0.76	0.79	2.08	14084	1671	5	37	0	0	0	logfile
✔	8G5M	29749	2024-02-16	2023-02-13	2.58	3.52	2.74	3.3	0.006	1.04	0.0	0.09	18.45	0.02	2.115	7.94	1.31	10.0	89.9	0.1	-0.67	0.74	0.69	2.36	3.3	0.004	1.00	1.0	0.04	18.68	0.00	2.028	14.20	2.06	9.6	90.4	0.1	-0.43	1.96	0.73	0.78	2.10	14673	1747	5	46	0	0	0	logfile
✔	8G5o	29751	2024-02-15	2023-02-13	2.61	3.53	2.82	3.3	0.005	0.84	0.0	0.04	16.53	0.01	2.003	5.69	1.72	5.6	94.4	0.0	0.26	0.66	0.53	1.42	3.3	0.004	0.73	0.0	0.04	17.44	0.00	2.132	14.93	4.23	8.3	91.7	0.0	-0.46	1.26	0.73	0.72	1.38	11952	1716	5	38	0	0	0	logfile
✔	8G5L	29748	2024-02-15	2023-02-13	3.0	3.41	3.03	3.2	0.009	1.04	0.0	0.07	18.59	0.00	2.075	7.07	2.17	7.8	92.2	0.1	-0.22	0.66	0.55	1.10	3.3	0.004	0.84	1.0	0.05	19.31	0.01	2.050	18.51	4.35	8.7	91.3	0.0	-0.71	1.02	0.71	0.68	1.30	12623	1634	5	39	0	0	0	logfile

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