Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FYC	29564	2024-02-16	2023-01-25	4.1	4.43	4.15	4.1	0.004	0.68	2.0	0.05	20.67	0.00	2.196	18.87	0.25	3.2	96.7	0.1	-0.60	0.82	0.74	—	4.1	0.003	0.65	0.0	0.04	21.48	0.00	2.101	20.83	0.00	3.5	96.5	0.0	-0.41	1.28	0.82	0.74	—	14575	1475	11	145	0	0	0	logfile
✔	8FYB	29563	2024-02-16	2023-01-25	3.1	3.33	3.15	3.3	0.004	0.60	0.0	0.04	20.88	0.00	2.211	12.15	0.09	3.6	96.4	0.0	0.63	0.71	0.78	2.70	3.3	0.003	0.58	0.0	0.04	22.35	0.00	2.176	12.73	1.62	3.4	96.6	0.0	0.90	1.69	0.70	0.79	2.38	13486	1359	10	136	0	0	0	logfile
✔	8FY4	29552	2024-02-13	2023-01-25	2.57	2.06	2.58	2.8	0.003	0.57	0.0	0.04	14.87	0.00	2.189	8.90	1.87	1.8	98.2	0.0	2.42	0.63	0.62	1.36	1.9	0.004	0.59	0.0	0.04	17.17	0.00	2.155	9.28	2.68	2.4	97.6	0.0	1.77	1.14	0.79	0.79	2.84	7800	989	3	0	0	0	0	logfile
✔	8CBQ	16549	2024-02-15	2023-01-25	4.0	4.37	3.88	4.2	0.008	0.72	0.0	0.04	26.20	0.01	2.284	3.83	1.82	3.9	96.1	0.0	-5.85	0.75	0.74	—	4.2	0.004	0.77	0.0	0.04	27.56	0.01	2.085	20.84	6.73	2.9	97.1	0.0	0.37	1.96	0.78	0.81	—	12959	853	11	300	0	0	0	logfile
✔	8FY3	29551	2024-02-14	2023-01-25	2.88	3.13	2.93	3.2	0.003	0.49	0.0	0.04	11.51	0.00	2.186	7.75	2.96	4.1	95.9	0.0	1.07	0.57	0.73	3.25	3.2	0.004	0.85	0.0	0.04	14.69	0.00	2.162	9.75	2.45	5.0	95.0	0.0	1.50	0.54	0.60	0.78	2.64	8948	1123	3	0	0	0	0	logfile
✔	8FY9	29561	2024-02-15	2023-01-25	3.1	3.32	3.15	3.3	0.003	0.52	0.0	0.04	17.51	0.00	2.209	11.22	0.00	3.1	96.9	0.0	0.86	0.70	0.77	2.18	3.3	0.003	0.53	0.0	0.04	18.89	0.00	2.218	11.45	2.51	2.9	97.1	0.0	1.22	1.17	0.69	0.78	2.21	10742	1228	8	56	0	0	0	logfile
✔	8FYD	29565	2024-02-15	2023-01-25	3.9	4.29	4.11	4.2	0.003	0.58	0.0	0.04	22.39	0.00	2.196	15.08	0.00	3.4	96.6	0.0	-0.04	0.81	0.79	1.75	4.2	0.005	0.72	0.0	0.04	22.91	0.00	2.141	19.74	2.68	4.7	95.3	0.0	0.00	1.20	0.81	0.79	1.46	13612	1325	10	156	0	0	0	logfile
✔	8FXH	29533	2024-02-21	2023-01-24	2.8	2.94	2.88	4.0	0.006	1.37	50.0	0.10	17.25	0.01	2.235	6.73	1.19	7.8	91.8	0.4	-1.03	0.32	0.19	0.18	2.9	0.003	0.73	0.0	0.05	18.05	0.01	2.050	6.85	2.04	8.1	91.6	0.3	-1.14	1.88	0.76	0.85	1.88	30228	3786	6	0	0	0	0	logfile
✔	8FXi	29534	2024-02-21	2023-01-24	2.7	2.87	2.84	2.9	0.014	2.10	93.0	0.12	13.25	0.02	1.801	6.73	3.12	7.1	92.1	0.8	-1.18	0.53	0.65	2.55	2.8	0.002	0.59	0.0	0.05	15.20	0.00	2.146	3.57	2.03	5.9	93.8	0.2	-0.74	0.87	0.74	0.82	2.48	29641	3684	10	0	6	0	0	logfile
✔	8CA1	16515	2024-02-14	2023-01-24	3.9	3.75	4.03	4.0	0.006	0.89	0.0	0.05	14.98	0.01	2.041	10.58	0.00	5.5	94.4	0.2	-1.92	0.78	0.81	2.21	4.0	0.003	0.65	0.0	0.04	15.63	0.00	2.157	11.41	1.59	2.5	97.5	0.0	2.30	2.01	0.78	0.81	1.98	9036	1178	4	0	2	0	0	logfile
✔	8CAX	16535	2024-02-13	2023-01-24	3.7	3.92	3.26	4.2	0.009	1.65	6.0	0.09	14.83	0.01	2.271	8.26	4.55	9.6	90.4	0.0	-3.97	0.46	0.83	4.11	4.2	0.004	0.96	0.0	0.05	16.24	0.00	2.143	13.38	3.79	9.6	90.4	0.0	-2.70	3.37	0.39	0.75	4.32	3444	450	6	0	0	0	0	logfile
✔	8FXB	29530	2024-02-13	2023-01-24	3.1	3.37	3.14	3.5	0.011	1.21	1.0	0.07	10.52	0.01	2.024	5.30	0.59	3.2	96.4	0.4	-0.59	0.64	0.70	2.98	3.5	0.004	0.67	0.0	0.04	14.60	0.00	2.142	8.02	1.54	4.1	95.9	0.0	0.20	1.19	0.65	0.76	2.50	7912	976	6	0	7	0	0	logfile
✔	8FXC	29531	2024-02-13	2023-01-24	3.2	3.50	3.23	3.6	0.011	1.40	3.0	0.10	11.35	0.01	2.403	4.68	1.91	3.3	96.0	0.7	-1.21	0.67	0.74	3.85	3.6	0.003	0.60	0.0	0.04	14.17	0.00	2.151	5.57	0.73	3.0	97.0	0.0	0.18	0.55	0.69	0.79	3.47	7639	1002	6	0	8	0	0	logfile
✔	8CAD	16524	2024-02-15	2023-01-24	2.85	2.57	2.81	2.7	0.003	0.59	0.0	0.05	11.54	0.00	2.115	5.66	0.00	1.8	98.2	0.0	0.82	0.69	0.81	3.81	2.6	0.005	0.62	0.0	0.04	14.33	0.00	1.858	5.16	2.21	4.4	95.6	0.0	0.28	0.62	0.70	0.85	4.11	64084	3816	30	0	78	766	31062	logfile
✔	8CAU	16534	2024-02-15	2023-01-24	3.4	4.09	3.51	3.8	0.003	0.52	0.0	0.04	16.19	0.00	2.033	21.48	0.14	8.4	91.6	0.0	-3.17	0.90	0.89	4.04	3.8	0.004	0.73	0.0	0.05	15.59	0.00	2.236	8.64	1.76	7.6	92.4	0.0	-1.80	1.01	0.88	0.92	3.67	13545	1635	20	0	25	0	0	logfile
✔	8CAQ	16532	2024-02-13	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	2.8	0.003	0.61	0.0	0.05	14.19	0.00	2.297	3.25	0.91	1.9	98.1	0.0	-1.83	0.60	0.46	0.93	6.60	2870	375	5	0	0	0	0	logfile
✔	8CA9	16521	2024-02-17	2023-01-24	2.29	2.19	2.27	2.2	0.003	0.56	0.0	0.04	14.41	0.00	2.021	2.73	0.00	1.2	98.8	0.0	0.94	0.71	0.84	5.01	2.2	0.004	0.60	0.0	0.04	14.83	0.00	1.892	2.86	0.70	2.4	97.6	0.0	1.22	2.47	0.73	0.87	5.25	70679	4074	27	0	69	2107	33094	logfile
✔	8CAH	16525	2024-02-21	2023-01-24	3.0	3.15	3.05	3.0	0.007	1.03	3.0	0.05	21.69	0.01	2.031	4.26	0.61	5.1	94.7	0.1	-2.26	0.86	0.82	2.54	3.0	0.007	0.75	0.0	0.05	21.56	0.01	1.847	11.31	3.20	5.8	94.1	0.1	-0.01	1.15	0.87	0.84	2.31	95563	8346	54	1745	162	0	0	logfile
✔	8i54	35191	2024-02-18	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	19.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.61	0.0	0.04	19.64	0.00	1.923	25.69	1.18	14.0	85.9	0.2	-3.21	0.56	0.86	0.72	0.77	19661	1113	4	67	0	0	9100	logfile
✔	8CAi	16526	2024-02-23	2023-01-24	2.08	1.77	1.93	1.9	0.014	1.52	2.0	0.13	22.06	0.03	1.839	0.59	0.86	3.7	96.2	0.1	-1.66	0.65	0.81	5.19	1.9	0.003	0.68	0.0	0.04	22.52	0.01	1.844	7.39	1.80	2.5	97.5	0.0	0.59	0.84	0.73	0.85	4.71	37814	1552	33	1114	90	1416	0	logfile

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