Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i54	35191	2024-02-18	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	19.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.61	0.0	0.04	19.64	0.00	1.923	25.69	1.18	14.0	85.9	0.2	-3.21	0.56	0.86	0.72	0.77	19661	1113	4	67	0	0	9100	logfile
✔	8FWQ	29515	2024-02-20	2023-01-23	3.96	4.37	4.09	4.1	0.009	1.21	0.0	0.10	18.59	0.01	2.216	4.86	0.28	7.9	91.5	0.7	-4.98	0.72	0.76	1.01	4.1	0.003	0.79	0.0	0.05	14.01	0.00	2.080	12.75	2.32	7.0	92.8	0.2	-0.78	0.87	0.73	0.77	1.03	26805	3272	26	0	67	0	0	logfile
✔	8FWW	29521	2024-02-16	2023-01-23	3.1	3.34	3.12	3.4	0.013	1.64	0.0	0.12	20.28	0.01	2.206	6.04	1.17	9.7	90.3	0.0	-5.95	0.59	0.76	2.91	3.4	0.003	0.65	0.0	0.04	17.05	0.00	2.236	9.18	2.42	7.3	92.7	0.0	-0.69	0.97	0.64	0.83	1.97	14471	1680	14	0	49	0	0	logfile
✔	8FWS	29517	2024-02-16	2023-01-23	3.23	3.47	3.26	3.5	0.012	1.62	0.0	0.12	19.90	0.01	2.250	4.96	0.55	8.5	91.1	0.4	-5.96	0.65	0.74	3.06	3.5	0.003	0.71	0.0	0.04	18.22	0.00	2.111	10.37	2.07	6.6	93.1	0.4	-1.38	1.15	0.72	0.82	2.61	14416	1680	14	0	46	0	0	logfile
✔	8FWT	29518	2024-02-15	2023-01-23	3.09	3.38	3.14	3.4	0.007	1.04	0.0	0.07	16.22	0.01	2.333	2.08	0.82	8.0	92.0	0.0	-5.70	0.65	0.78	3.60	3.4	0.003	0.66	0.0	0.04	14.11	0.00	2.205	7.86	2.39	5.8	94.2	0.0	-0.89	1.36	0.72	0.85	3.31	12606	1532	16	0	30	0	0	logfile
✔	8FWV	29520	2024-02-15	2023-01-23	3.03	3.27	3.07	3.3	0.007	1.07	0.0	0.10	14.82	0.01	2.334	3.96	1.19	7.3	92.4	0.3	-5.20	0.68	0.81	4.53	3.3	0.004	0.67	0.0	0.05	14.13	0.00	2.194	6.40	3.66	6.2	93.8	0.0	-1.16	0.62	0.71	0.86	3.57	12584	1532	16	0	28	0	0	logfile
✔	8FWR	29516	2024-02-15	2023-01-23	3.1	3.33	3.13	3.5	0.008	1.10	0.0	0.07	19.32	0.01	2.334	2.19	0.00	7.7	91.7	0.5	-5.62	0.63	0.73	3.45	3.4	0.003	0.65	0.0	0.04	13.96	0.00	2.282	6.70	1.19	5.1	94.8	0.1	-0.48	1.21	0.64	0.77	2.72	12628	1532	16	0	32	0	0	logfile
✔	8FX5	29524	2024-02-14	2023-01-23	2.45	3.11	2.28	2.8	0.008	1.02	0.0	0.05	12.35	0.01	2.299	2.42	0.11	2.0	98.0	0.0	-0.73	0.76	0.90	4.91	2.8	0.003	0.60	0.0	0.04	14.49	0.00	2.237	5.47	0.74	1.4	98.6	0.0	1.38	0.99	0.75	0.91	4.33	8818	1127	9	0	2	47	0	logfile
✔	8FWM	29512	2024-02-20	2023-01-23	3.49	3.85	3.68	3.9	0.005	0.88	0.0	0.05	14.58	0.01	2.205	13.47	2.37	13.8	85.1	1.2	-4.62	0.37	0.79	1.94	3.9	0.003	0.75	0.0	0.05	16.47	0.00	2.113	11.29	4.40	10.2	89.6	0.2	-1.82	0.83	0.39	0.83	1.73	26669	3483	15	0	0	0	0	logfile
✔	8C9X	16513	2024-02-15	2023-01-23	2.3	3.14	2.24	2.8	0.004	0.68	0.0	0.05	17.44	0.00	2.143	9.34	2.46	3.1	96.9	0.0	-1.03	0.87	0.92	4.69	2.8	0.004	0.69	0.0	0.05	16.97	0.00	2.179	8.96	2.39	4.3	95.7	0.0	-0.75	0.36	0.82	0.91	5.30	13485	1635	20	0	20	0	0	logfile
✔	8FX4	29523	2024-02-15	2023-01-23	3.9	2.80	4.14	2.5	0.004	0.91	0.0	0.05	18.48	0.00	2.117	13.89	0.80	7.7	91.9	0.4	-1.50	0.73	0.72	1.18	2.4	0.003	0.81	0.0	0.05	18.80	0.00	2.122	13.03	4.55	8.5	91.4	0.1	-1.21	0.42	0.73	0.73	1.07	13474	1645	6	0	2	0	0	logfile
✔	8FWi	29505	2024-02-20	2023-01-22	2.9	3.12	—	3.1	0.012	1.40	0.0	0.05	15.29	0.01	1.894	11.95	2.04	1.8	98.2	0.0	0.65	0.75	0.81	3.55	3.1	0.004	0.62	0.0	0.06	16.33	0.00	1.726	4.28	1.04	1.7	98.3	0.0	1.90	1.18	0.78	0.86	3.57	102924	6576	36	0	48	72	51060	logfile
✔	8FWJ	29506	2024-02-21	2023-01-22	2.7	2.88	—	3.0	0.003	0.72	0.0	0.04	15.23	0.01	1.976	31.45	3.45	2.7	97.3	0.0	0.43	0.59	0.69	1.40	2.9	0.004	0.59	0.0	0.04	17.34	0.00	1.688	21.79	3.76	4.2	95.8	0.0	-0.57	1.33	0.73	0.85	2.74	60204	7644	48	0	48	48	24	logfile
✔	8C9H	16510	2024-02-16	2023-01-22	3.2	3.51	3.35	3.6	0.004	0.90	0.0	0.04	12.79	0.00	2.324	4.83	0.44	3.9	96.1	0.0	2.63	0.70	0.88	2.95	3.6	0.002	0.56	0.0	0.04	14.52	0.01	2.169	4.96	1.76	4.7	95.3	0.0	1.07	0.33	0.69	0.89	2.56	15776	2024	16	0	8	0	0	logfile
✔	8i51	35190	2024-02-19	2023-01-21	2.76	2.98	2.80	3.0	0.012	1.10	18.0	0.10	16.82	0.01	2.130	10.05	0.69	8.5	91.3	0.2	-1.86	0.71	0.73	3.66	3.0	0.002	0.62	0.0	0.05	17.11	0.00	2.035	7.37	1.53	7.4	92.5	0.2	-0.79	1.11	0.79	0.86	3.41	25416	3168	12	0	18	0	0	logfile
✔	8i4Y	35188	2024-02-25	2023-01-21	3.84	3.60	3.74	3.6	0.012	1.83	12.0	0.10	12.83	0.02	2.536	0.04	1.16	3.9	96.1	0.0	-0.81	0.80	0.73	2.97	3.6	0.003	0.60	0.0	0.04	14.13	0.00	1.887	5.22	1.16	2.8	97.2	0.0	-0.15	1.56	0.82	0.80	1.77	49016	3374	4	0	4	0	24348	logfile
✔	8i4Z	35189	2024-02-25	2023-01-21	3.97	3.62	3.92	3.8	0.012	1.81	8.0	0.10	12.61	0.02	2.548	0.06	0.74	3.8	96.2	0.0	-0.79	0.81	0.73	2.91	3.7	0.005	0.67	0.0	0.04	14.17	0.01	1.859	6.62	1.12	5.7	94.3	0.0	-0.79	1.59	0.84	0.80	2.06	48977	3374	3	0	1	0	24348	logfile
✔	8C8Y	16495	2024-02-19	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	3.1	0.005	0.62	0.0	0.04	23.05	0.00	2.004	10.10	3.98	7.9	92.0	0.1	-1.27	0.46	0.80	0.87	2.56	77316	2566	25	2667	0	0	0	logfile
✔	8C92	16499	2024-02-13	2023-01-21	3.79	4.24	4.02	3.8	0.002	0.38	0.0	0.03	22.72	0.00	1.872	5.69	0.00	4.5	95.4	0.1	0.46	0.83	0.79	1.60	3.8	0.003	0.54	0.0	0.03	23.05	0.00	2.032	15.59	3.53	7.0	93.0	0.0	-0.87	0.53	0.84	0.83	1.67	53489	1700	17	1873	0	0	0	logfile
✔	8C90	16497	2024-02-15	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	22.69	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.005	0.67	1.0	0.04	22.98	0.00	2.026	13.54	3.66	8.0	92.0	0.0	-0.91	0.50	0.81	0.84	1.82	64726	2183	22	2219	0	0	0	logfile

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