Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C97	16504	2024-02-23	2023-01-21	4.07	4.81	4.16	4.0	0.002	0.39	0.0	0.03	23.09	0.00	1.904	5.95	0.00	4.6	95.2	0.2	0.72	0.80	0.75	—	4.0	0.004	0.62	0.0	0.03	23.84	0.00	1.806	22.26	0.00	8.3	91.4	0.3	-1.49	0.75	0.80	0.83	—	36163	1077	12	1292	0	0	0	logfile
✔	8C8T	16493	2024-02-17	2023-01-21	3.2	3.50	3.27	3.5	0.004	0.67	0.0	0.05	14.74	0.01	2.135	5.88	0.10	3.0	96.9	0.1	-0.55	0.68	0.83	3.00	3.5	0.003	0.64	0.0	0.05	14.64	0.00	2.165	5.67	2.40	4.3	95.6	0.1	-0.69	0.37	0.65	0.85	3.03	19762	2502	32	0	56	0	0	logfile
✔	8C8Z	16496	2024-02-16	2023-01-21	3.12	3.41	3.24	3.1	0.002	0.42	0.0	0.03	22.60	0.00	1.882	6.67	0.05	7.0	93.0	0.1	0.01	0.77	0.79	2.28	3.1	0.004	0.57	0.0	0.03	22.72	0.00	2.029	11.75	3.19	7.9	92.0	0.1	-1.11	1.33	0.80	0.85	2.27	67990	2311	24	2324	0	0	0	logfile
✔	8C92	16499	2024-02-13	2023-01-21	3.79	4.24	4.02	3.8	0.002	0.38	0.0	0.03	22.72	0.00	1.872	5.69	0.00	4.5	95.4	0.1	0.46	0.83	0.79	1.60	3.8	0.003	0.54	0.0	0.03	23.05	0.00	2.032	15.59	3.53	7.0	93.0	0.0	-0.87	0.53	0.84	0.83	1.67	53489	1700	17	1873	0	0	0	logfile
✔	8C8X	16494	2024-02-20	2023-01-21	3.93	4.35	4.27	3.9	0.004	0.40	0.0	0.03	22.69	0.00	1.690	6.44	0.30	4.8	95.1	0.1	0.41	0.80	0.74	0.78	3.9	0.005	0.64	0.0	0.03	23.51	0.00	1.724	19.94	4.47	8.1	91.9	0.0	-1.43	1.45	0.82	0.80	1.08	82776	2832	28	2824	0	0	0	logfile
✔	8C94	16501	2024-02-13	2023-01-21	3.8	4.29	4.13	3.8	0.002	0.41	0.0	0.03	22.44	0.00	1.610	7.44	0.00	5.3	94.7	0.0	0.23	0.79	0.79	1.17	3.9	0.006	0.74	0.0	0.04	23.16	0.01	1.946	25.45	3.87	10.3	89.6	0.1	-1.91	1.43	0.81	0.84	1.30	54560	2070	21	1787	0	0	0	logfile
✔	8C91	16498	2024-02-14	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.71	0.0	0.04	24.09	0.01	1.946	33.40	0.00	10.5	89.4	0.1	-2.06	0.97	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	8C90	16497	2024-02-15	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	22.69	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.005	0.67	1.0	0.04	22.98	0.00	2.026	13.54	3.66	8.0	92.0	0.0	-0.91	0.50	0.81	0.84	1.82	64726	2183	22	2219	0	0	0	logfile
✔	8C8Y	16495	2024-02-19	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	3.1	0.005	0.62	0.0	0.04	23.05	0.00	2.004	10.10	3.98	7.9	92.0	0.1	-1.27	0.46	0.80	0.87	2.56	77316	2566	25	2667	0	0	0	logfile
✔	8i4Y	35188	2024-02-25	2023-01-21	3.84	3.60	3.74	3.6	0.012	1.83	12.0	0.10	12.83	0.02	2.536	0.04	1.16	3.9	96.1	0.0	-0.81	0.80	0.73	2.97	3.6	0.003	0.60	0.0	0.04	14.13	0.00	1.887	5.22	1.16	2.8	97.2	0.0	-0.15	1.56	0.82	0.80	1.77	49016	3374	4	0	4	0	24348	logfile
✔	8i4Z	35189	2024-02-25	2023-01-21	3.97	3.62	3.92	3.8	0.012	1.81	8.0	0.10	12.61	0.02	2.548	0.06	0.74	3.8	96.2	0.0	-0.79	0.81	0.73	2.91	3.7	0.005	0.67	0.0	0.04	14.17	0.01	1.859	6.62	1.12	5.7	94.3	0.0	-0.79	1.59	0.84	0.80	2.06	48977	3374	3	0	1	0	24348	logfile
✔	8FW9	29498	2024-02-18	2023-01-20	4.46	4.77	4.47	4.5	0.012	1.19	0.0	0.07	10.84	0.00	2.330	1.88	0.08	5.1	94.1	0.9	-0.82	0.76	0.77	—	4.5	0.003	0.69	0.0	0.04	13.09	0.00	2.087	13.42	0.04	8.2	91.8	0.0	0.20	2.38	0.76	0.79	—	21612	2712	3	0	0	0	0	logfile
✔	8FW2	29496	2024-02-18	2023-01-20	3.8	4.07	3.81	4.0	0.011	1.16	0.0	0.07	10.69	0.00	2.235	1.40	0.17	5.3	94.0	0.7	-0.39	0.71	0.78	1.64	4.0	0.003	0.71	0.0	0.04	15.36	0.00	2.029	10.15	2.06	6.6	93.3	0.0	-0.17	2.99	0.71	0.76	1.20	21612	2712	3	0	0	0	0	logfile
✔	8C8G	16475	2024-02-18	2023-01-20	2.98	3.19	3.05	3.2	0.013	1.50	1.0	0.08	14.19	0.01	2.198	6.69	0.88	8.0	91.8	0.2	-4.21	0.72	0.89	4.21	3.2	0.005	0.63	0.0	0.04	16.34	0.00	2.083	10.13	2.06	5.8	94.2	0.0	-0.91	0.43	0.71	0.87	3.30	20362	2530	2	0	0	0	0	logfile
✔	8C8P	16490	2024-02-13	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.004	0.74	0.0	0.05	13.71	0.00	2.115	22.57	0.00	8.1	91.9	0.0	-1.12	1.09	0.68	0.73	—	2449	314	2	0	0	0	0	logfile
✔	8FWB	29500	2024-02-22	2023-01-20	3.14	3.48	3.19	3.6	0.005	0.83	0.0	0.05	15.00	0.00	2.237	11.31	2.57	12.8	87.2	0.0	-3.49	0.48	0.84	2.30	3.5	0.003	0.68	0.0	0.04	17.22	0.00	2.207	9.10	3.72	10.9	89.1	0.0	-1.10	0.60	0.44	0.83	1.99	35256	4572	12	0	0	0	0	logfile
✔	8FWD	29502	2024-02-20	2023-01-20	3.67	4.15	3.98	4.1	0.003	0.52	0.0	0.03	12.69	0.00	2.375	1.50	0.05	0.8	99.2	0.0	1.38	0.75	0.78	1.41	4.1	0.002	0.49	0.0	0.03	15.42	0.00	2.122	5.88	1.42	1.7	98.3	0.0	3.56	0.78	0.72	0.76	1.49	83280	5736	48	0	0	0	40200	logfile
✔	8FWC	29501	2024-02-22	2023-01-20	2.96	3.30	3.10	3.3	0.009	1.00	0.0	0.06	16.49	0.01	2.093	9.74	16.67	10.3	89.7	0.0	-3.32	0.71	0.85	3.94	3.3	0.005	0.75	0.0	0.05	16.84	0.01	2.104	6.59	4.41	6.9	93.1	0.0	-0.27	2.50	0.70	0.87	3.56	100740	13380	60	0	0	0	0	logfile
✔	8FVW	29494	2024-02-19	2023-01-19	2.1	2.22	2.16	2.2	0.004	0.61	0.0	0.04	14.75	0.00	1.974	8.97	0.07	1.9	98.1	0.0	0.42	0.72	0.88	4.32	2.2	0.003	0.58	0.0	0.04	16.97	0.00	1.945	7.95	0.78	2.4	97.6	0.0	0.46	0.36	0.73	0.89	4.25	26108	3165	17	52	5	225	0	logfile
✔	8FVR	29491	2024-02-19	2023-01-19	2.42	2.64	2.53	2.7	0.003	0.64	0.0	0.05	14.46	0.01	2.002	8.85	0.07	2.4	97.6	0.0	0.56	0.72	0.88	3.95	2.6	0.003	0.55	0.0	0.04	16.85	0.00	1.956	7.49	1.08	2.2	97.8	0.0	0.96	0.96	0.72	0.89	3.79	26040	3165	17	51	3	201	0	logfile

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