Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i4H	35173	2024-02-13	2023-01-19	3.81	3.30	3.92	3.7	0.001	0.43	0.0	0.04	9.23	0.00	2.262	10.14	5.85	7.4	92.6	0.0	-4.65	0.69	0.64	1.02	3.6	0.004	0.90	0.0	0.05	14.40	0.01	2.151	22.47	5.71	14.5	85.5	0.0	-3.14	1.85	0.72	0.69	1.32	6539	833	2	0	0	0	0	logfile
✔	8i4F	35171	2024-02-13	2023-01-19	3.44	2.60	3.44	3.5	0.002	0.45	0.0	0.04	9.63	0.00	2.232	8.93	5.44	6.5	93.5	0.0	-4.30	0.70	0.66	1.85	3.5	0.004	0.78	0.0	0.05	14.92	0.00	2.153	17.59	5.13	10.6	89.4	0.0	-2.62	1.24	0.73	0.72	1.60	5824	738	2	0	0	0	0	logfile
✔	8C89	16473	2024-02-13	2023-01-19	4.41	3.51	3.83	2.2	0.007	1.10	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.1	0.005	0.84	0.0	0.05	13.56	0.01	2.119	33.70	0.00	13.8	86.1	0.2	-2.03	0.59	0.70	0.65	—	5106	652	5	0	4	0	0	logfile
✔	8i4G	35172	2024-02-13	2023-01-19	3.68	2.81	3.67	3.8	0.002	0.63	0.0	0.04	10.19	0.00	2.246	6.82	5.71	9.0	91.0	0.0	-4.78	0.68	0.65	1.56	3.2	0.004	0.78	0.0	0.05	14.66	0.00	2.185	16.68	5.71	11.9	88.1	0.0	-3.20	1.25	0.70	0.68	1.50	6057	768	2	0	0	0	0	logfile
✔	8FVU	29493	2024-02-17	2023-01-19	3.6	3.85	3.65	3.8	0.012	1.22	0.0	0.07	10.95	0.00	2.338	2.29	0.00	6.9	91.7	1.4	-1.70	0.80	0.83	2.31	3.8	0.003	0.67	0.0	0.04	15.50	0.00	2.179	7.30	2.19	8.9	91.0	0.1	-1.04	2.31	0.78	0.82	2.05	18758	2344	4	0	4	0	0	logfile
✔	8i4B	35168	2024-02-14	2023-01-19	3.13	3.35	3.17	3.4	0.017	1.07	0.0	0.06	14.07	0.01	2.161	11.06	0.00	6.0	94.0	0.0	-2.17	0.60	0.75	2.25	3.4	0.004	0.56	0.0	0.04	15.64	0.00	2.091	7.00	0.94	1.9	98.1	0.0	1.56	1.55	0.60	0.81	1.74	9727	1218	1	0	0	0	0	logfile
✔	8i4M	35175	2024-02-19	2023-01-19	3.81	4.11	3.85	4.0	0.003	0.67	0.0	0.04	16.95	0.00	2.042	11.62	0.28	5.0	94.8	0.2	0.30	0.68	0.82	1.47	4.0	0.003	0.63	0.0	0.04	17.55	0.00	2.132	10.52	3.79	5.5	94.3	0.1	0.51	1.76	0.68	0.83	1.46	134400	17436	48	0	0	0	0	logfile
✔	8i4A	35167	2024-02-14	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	3.6	0.003	0.57	0.0	0.04	15.93	0.00	2.222	8.20	2.26	2.0	98.0	0.0	1.22	1.13	0.57	0.78	1.04	9763	1218	1	0	1	0	0	logfile
✔	8FUV	29481	2024-02-14	2023-01-18	3.1	3.21	2.89	3.1	0.003	0.59	0.0	0.04	12.83	0.00	2.169	5.52	0.00	5.6	94.4	0.0	-0.17	0.36	0.86	3.59	3.1	0.004	0.60	0.0	0.05	14.33	0.01	2.182	6.60	2.40	5.7	93.9	0.4	-0.61	1.17	0.37	0.89	3.81	10170	1368	7	0	0	0	0	logfile
✔	8C83	16470	2024-02-24	2023-01-18	3.0	3.59	3.11	3.0	0.005	0.98	0.0	0.05	23.13	0.01	2.217	4.85	0.68	6.1	93.9	0.0	-2.10	0.88	0.84	2.11	3.0	0.004	0.76	2.0	0.04	22.73	0.00	1.945	12.70	2.51	6.1	93.8	0.0	-0.17	0.42	0.89	0.86	2.11	45803	2725	18	1177	0	0	0	logfile
✔	8FVG	29486	2024-02-25	2023-01-18	3.1	2.34	3.16	3.2	0.004	0.66	0.0	0.05	14.20	0.00	2.106	8.55	0.00	5.7	94.3	0.0	-0.63	0.26	0.75	2.01	3.1	0.019	0.86	0.0	0.05	16.32	0.01	2.109	8.32	3.97	7.5	92.5	0.0	-0.66	1.36	0.26	0.78	2.16	48009	6409	13	0	0	0	0	logfile
✔	8C81	16468	2024-02-16	2023-01-18	3.3	3.77	3.41	3.7	0.007	0.64	0.0	0.05	15.20	0.00	2.225	3.97	0.00	3.7	96.3	0.0	0.64	0.67	0.82	2.60	3.7	0.002	0.52	0.0	0.04	15.57	0.00	2.169	4.39	0.94	3.3	96.7	0.0	1.01	0.26	0.74	0.88	2.18	15709	1938	8	0	6	0	0	logfile
✔	8i49	35165	2024-02-25	2023-01-18	2.41	2.54	2.47	2.5	0.015	1.46	29.0	0.09	16.84	0.01	2.263	7.48	0.43	6.1	93.8	0.2	-1.51	0.75	0.85	4.17	2.5	0.003	0.57	0.0	0.04	16.26	0.00	2.097	3.44	0.40	4.5	95.3	0.2	-0.03	0.41	0.75	0.84	3.95	50754	3180	12	0	6	0	25248	logfile
✔	8i3W	35160	2024-02-20	2023-01-18	2.8	2.94	2.82	2.9	0.004	0.71	0.0	0.05	14.07	0.01	1.868	13.14	0.00	8.0	92.0	0.0	-1.71	0.70	0.76	2.68	2.9	0.003	0.62	0.0	0.05	15.55	0.00	2.090	10.88	1.62	8.1	91.9	0.0	-1.17	0.36	0.71	0.79	2.40	27000	3345	21	0	69	0	0	logfile
✔	8C82	16469	2024-02-18	2023-01-18	3.4	3.85	3.56	3.8	0.008	0.67	0.0	0.05	15.03	0.00	2.108	4.64	0.09	3.0	97.0	0.0	0.90	0.70	0.81	2.29	3.8	0.003	0.55	0.0	0.04	16.15	0.00	2.212	4.35	1.43	3.9	96.1	0.0	1.23	0.45	0.71	0.84	2.19	21070	2618	12	0	6	0	0	logfile
✔	8i3U	35156	2024-02-13	2023-01-18	3.6	3.90	3.39	3.8	0.002	0.54	0.0	0.04	9.20	0.00	2.198	8.85	1.09	1.9	98.1	0.0	-0.52	0.64	0.75	3.16	3.8	0.003	0.64	0.0	0.04	15.29	0.01	2.181	9.15	4.90	5.3	94.7	0.0	-0.61	0.73	0.69	0.78	2.69	3408	437	4	0	1	0	0	logfile
✔	8FVH	29487	2024-02-17	2023-01-18	3.1	3.49	3.43	3.5	0.003	0.59	0.0	0.04	14.72	0.00	2.050	7.34	0.07	4.4	95.5	0.1	0.53	0.57	0.84	2.10	3.5	0.003	0.60	0.0	0.04	16.75	0.00	2.063	8.72	3.09	4.7	95.1	0.1	0.75	0.42	0.56	0.85	1.72	70392	8886	36	0	0	0	0	logfile
✔	8C80	16467	2024-02-15	2023-01-18	3.4	3.89	3.54	3.8	0.009	0.87	1.0	0.06	14.76	0.01	1.975	6.41	0.75	4.2	95.8	0.0	-1.48	0.65	0.77	1.46	3.8	0.002	0.56	0.0	0.04	15.48	0.00	2.257	4.95	2.34	3.2	96.8	0.0	0.31	0.80	0.70	0.84	2.10	10968	1350	7	0	6	0	0	logfile
✔	8FUZ	29482	2024-02-19	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	18.07	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.005	0.65	0.0	0.05	17.89	0.01	2.251	3.46	1.85	2.2	97.8	0.0	0.61	0.32	0.77	0.91	5.68	24008	3120	16	0	16	0	0	logfile
✔	8i3i	35153	2024-02-16	2023-01-17	2.68	2.94	2.69	2.9	0.007	0.94	4.0	0.06	15.82	0.01	2.175	6.83	0.44	7.1	92.7	0.2	-1.00	0.81	0.86	3.85	2.9	0.004	0.64	0.0	0.05	16.87	0.00	2.181	8.32	2.89	8.0	91.8	0.2	-0.77	1.07	0.82	0.87	3.69	16808	2088	8	0	8	0	0	logfile

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