Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i3S	35155	2024-02-13	2023-01-17	3.9	4.12	3.88	4.1	0.003	0.59	0.0	0.05	11.40	0.00	2.235	14.76	2.54	2.9	97.1	0.0	-1.18	0.64	0.72	2.12	4.1	0.004	0.70	0.0	0.05	15.56	0.01	2.174	18.33	5.93	5.8	94.2	0.0	-1.01	2.26	0.65	0.74	1.20	3272	420	4	0	1	0	0	logfile
✔	8FUG	29458	2024-02-20	2023-01-17	2.7	2.73	2.58	2.9	0.007	1.33	0.0	0.57	23.66	0.00	2.220	7.47	3.12	9.9	90.1	0.0	-3.91	0.64	0.80	3.98	2.9	0.003	0.67	0.0	0.05	16.69	0.00	2.115	6.57	4.35	11.3	88.7	0.0	-3.24	0.78	0.65	0.84	3.88	26634	1679	46	0	23	0	13317	logfile
✔	8i3D	35150	2024-02-14	2023-01-17	2.81	3.08	2.87	3.1	0.009	0.99	2.0	0.06	13.50	0.01	2.328	2.52	0.83	5.6	94.4	0.0	-5.74	0.67	0.88	3.66	3.1	0.005	0.67	0.0	0.04	15.62	0.00	2.305	4.98	2.70	4.9	95.1	0.0	0.08	0.41	0.64	0.89	3.24	8798	1132	2	0	0	0	0	logfile
✔	8i3Q	35154	2024-02-13	2023-01-17	3.1	3.03	2.94	3.1	0.005	0.83	0.0	0.05	22.35	0.02	1.762	14.07	5.39	7.2	92.8	0.0	0.08	0.79	0.76	3.10	3.0	0.003	0.59	0.0	0.03	21.74	0.00	2.087	8.07	1.16	5.8	94.2	0.0	1.44	1.99	0.80	0.80	2.43	6998	595	3	95	1	0	0	logfile
✔	8i3i	35153	2024-02-16	2023-01-17	2.68	2.94	2.69	2.9	0.007	0.94	4.0	0.06	15.82	0.01	2.175	6.83	0.44	7.1	92.7	0.2	-1.00	0.81	0.86	3.85	2.9	0.004	0.64	0.0	0.05	16.87	0.00	2.181	8.32	2.89	8.0	91.8	0.2	-0.77	1.07	0.82	0.87	3.69	16808	2088	8	0	8	0	0	logfile
✔	8FU3	29452	2024-02-15	2023-01-16	2.88	2.76	2.85	2.9	0.014	1.15	0.0	0.06	10.52	0.00	2.330	1.65	0.07	1.6	97.9	0.5	0.75	0.58	0.76	4.22	2.9	0.004	0.58	0.0	0.04	15.57	0.00	2.071	10.17	2.29	2.8	97.1	0.1	1.39	1.04	0.71	0.85	4.03	13563	1673	6	0	1	0	0	logfile
✔	8i3A	35147	2024-02-14	2023-01-16	3.04	3.30	3.07	3.3	0.008	1.04	0.0	0.06	14.22	0.01	2.023	2.68	0.00	7.6	92.2	0.2	-4.99	0.65	0.87	3.46	3.3	0.003	0.59	0.0	0.04	15.19	0.00	2.279	4.25	1.25	5.5	94.3	0.2	-0.86	0.37	0.65	0.89	3.04	8830	1124	4	0	4	0	0	logfile
✔	8i3C	35149	2024-02-14	2023-01-16	2.85	3.26	3.03	3.2	0.009	1.02	0.0	0.06	15.63	0.01	2.313	4.42	1.81	6.4	93.6	0.0	-6.17	0.66	0.86	3.78	3.2	0.003	0.64	0.0	0.04	15.91	0.00	2.221	5.61	2.03	5.4	94.6	0.0	-0.31	1.28	0.59	0.86	3.08	8664	1104	4	0	2	0	0	logfile
✔	8i39	35146	2024-02-14	2023-01-16	2.85	3.17	2.93	3.2	0.009	0.90	0.0	0.05	14.17	0.01	2.116	22.50	0.22	6.2	93.8	0.0	-5.71	0.59	0.78	3.76	3.2	0.003	0.64	0.0	0.04	15.54	0.00	2.226	5.55	2.84	4.0	96.0	0.0	-1.38	1.32	0.49	0.74	2.95	8413	1076	3	0	1	0	0	logfile
✔	8i3B	35148	2024-02-14	2023-01-16	3.08	3.71	3.18	3.6	0.008	1.19	0.0	0.06	14.31	0.01	2.249	4.61	1.50	8.8	91.2	0.0	-5.42	0.53	0.78	2.75	3.6	0.003	0.64	0.0	0.04	15.72	0.00	2.160	6.38	2.67	7.1	92.9	0.0	-1.17	0.96	0.53	0.78	2.21	8646	1100	4	0	2	0	0	logfile
✔	8i35	35144	2024-02-20	2023-01-16	2.75	2.99	2.81	2.9	0.007	0.89	0.0	0.06	16.85	0.01	2.220	10.49	0.29	8.7	91.2	0.2	-1.50	0.76	0.77	4.12	2.9	0.004	0.53	0.0	0.05	17.23	0.00	2.062	23.08	1.23	7.9	91.9	0.2	-0.96	2.06	0.83	0.88	3.55	26070	3168	12	0	6	0	744	logfile
✔	8FU8	29455	2024-02-19	2023-01-16	3.08	2.74	3.01	3.0	0.013	1.29	0.0	0.11	10.27	0.00	2.336	1.90	0.14	5.4	93.6	1.1	-0.39	0.75	0.85	3.36	3.0	0.004	0.65	0.0	0.04	13.46	0.00	2.092	7.69	1.62	7.9	92.0	0.1	-0.41	1.10	0.74	0.88	3.12	25469	3165	6	0	48	0	0	logfile
✔	8FU9	29456	2024-02-19	2023-01-16	3.52	3.23	3.44	3.4	0.012	1.35	0.0	0.08	10.90	0.01	2.241	2.28	0.14	6.5	93.1	0.5	-0.76	0.72	0.82	2.38	3.4	0.005	0.75	0.0	0.05	14.60	0.00	2.080	12.11	1.76	8.6	91.3	0.1	-1.40	1.16	0.71	0.80	2.15	25313	3171	6	0	38	0	0	logfile
✔	8i38	35145	2024-02-13	2023-01-16	2.9	3.23	3.01	3.2	0.006	1.20	4.0	0.07	12.79	0.01	1.981	16.41	0.00	8.8	91.0	0.2	-6.34	0.49	0.71	2.72	3.2	0.004	0.71	0.0	0.04	15.33	0.00	2.203	7.33	2.15	7.4	92.4	0.2	-1.33	1.15	0.48	0.72	2.09	8122	1042	2	0	0	0	0	logfile
✔	8FU7	29454	2024-02-19	2023-01-16	3.21	2.73	3.12	3.1	0.012	1.30	0.0	0.08	10.16	0.00	2.159	1.81	0.07	5.2	94.0	0.9	-0.35	0.73	0.83	2.86	2.9	0.004	0.76	1.0	0.04	13.22	0.00	2.139	8.13	1.42	8.2	91.7	0.1	-0.66	1.07	0.74	0.85	2.85	25020	3138	6	0	48	0	0	logfile
✔	8C7G	16457	2024-02-15	2023-01-15	3.2	2.28	—	2.1	0.004	0.63	0.0	0.05	13.28	0.00	2.111	4.10	0.00	3.4	96.6	0.0	0.11	0.76	0.74	3.44	2.1	0.004	0.56	0.0	0.04	15.40	0.00	2.187	4.44	2.40	3.7	96.3	0.0	0.51	0.29	0.78	0.76	3.05	11525	1429	3	0	0	0	0	logfile
✔	8i1U	35122	2024-02-16	2023-01-13	3.24	3.46	3.39	3.5	0.004	0.63	0.0	0.04	15.39	0.00	1.879	11.18	0.00	5.8	94.1	0.0	0.11	0.71	0.81	1.94	3.5	0.002	0.59	0.0	0.04	16.95	0.00	1.743	11.09	2.43	4.9	95.0	0.1	0.43	1.11	0.68	0.82	1.39	67629	8763	34	0	48	0	0	logfile
✔	8i22	35129	2024-02-19	2023-01-13	2.15	2.49	2.17	2.4	0.006	0.69	0.0	0.06	17.82	0.00	2.236	8.42	0.65	3.9	95.9	0.2	-0.28	0.80	0.86	4.96	2.4	0.004	0.58	0.0	0.05	17.38	0.00	2.174	6.38	0.87	3.5	96.1	0.4	0.00	0.41	0.76	0.87	4.90	25398	3180	12	0	6	0	0	logfile
✔	8i23	35130	2024-02-20	2023-01-13	3.03	2.25	3.02	2.1	0.003	0.53	0.0	0.04	16.99	0.00	2.151	8.90	0.15	4.3	95.7	0.0	-0.28	0.79	0.77	2.80	2.1	0.003	0.57	0.0	0.04	18.85	0.00	2.101	9.15	3.04	4.1	95.9	0.0	0.10	0.35	0.78	0.80	2.39	26272	3066	9	108	3	0	0	logfile
✔	8i24	35131	2024-02-20	2023-01-13	3.36	2.98	3.63	2.9	0.004	0.61	0.0	0.05	18.26	0.00	2.029	7.97	0.91	3.4	96.6	0.0	-0.46	0.66	0.79	2.42	2.9	0.003	0.54	0.0	0.04	19.34	0.00	1.953	9.74	2.28	3.7	96.3	0.0	-0.26	0.34	0.67	0.81	2.21	26321	3068	9	110	3	0	0	logfile

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