Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i1U	35122	2024-02-16	2023-01-13	3.24	3.46	3.39	3.5	0.004	0.63	0.0	0.04	15.39	0.00	1.879	11.18	0.00	5.8	94.1	0.0	0.11	0.71	0.81	1.94	3.5	0.002	0.59	0.0	0.04	16.95	0.00	1.743	11.09	2.43	4.9	95.0	0.1	0.43	1.11	0.68	0.82	1.39	67629	8763	34	0	48	0	0	logfile
✔	8i23	35130	2024-02-20	2023-01-13	3.03	2.25	3.02	2.1	0.003	0.53	0.0	0.04	16.99	0.00	2.151	8.90	0.15	4.3	95.7	0.0	-0.28	0.79	0.77	2.80	2.1	0.003	0.57	0.0	0.04	18.85	0.00	2.101	9.15	3.04	4.1	95.9	0.0	0.10	0.35	0.78	0.80	2.39	26272	3066	9	108	3	0	0	logfile
✔	8FTo	29449	2024-02-25	2023-01-12	1.85	1.97	—	1.9	0.008	0.92	7.0	0.06	23.31	0.02	0.347	6.95	3.59	3.7	95.6	0.7	-0.14	0.73	0.86	5.85	2.0	0.004	0.74	0.0	0.04	22.92	0.01	1.829	5.46	2.47	3.1	96.8	0.1	0.55	0.88	0.74	0.89	5.87	146562	5584	111	4490	286	6114	0	logfile
✔	8FTi	29433	2024-02-13	2023-01-12	3.5	3.80	3.64	3.7	0.002	0.56	0.0	0.03	18.08	0.00	2.237	9.26	4.55	4.5	95.5	0.0	0.23	0.77	0.75	2.02	3.7	0.003	0.58	0.0	0.04	19.03	0.00	2.129	10.31	4.86	5.9	94.1	0.0	0.46	0.47	0.76	0.77	1.73	8126	737	2	97	0	0	0	logfile
✔	8FTK	29439	2024-02-13	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.003	0.55	0.0	0.04	4.49	0.00	2.164	4.30	0.00	8.2	91.8	0.0	0.75	1.24	0.86	0.82	—	7840	1584	1	0	0	0	0	logfile
✔	8FTH	29426	2024-02-14	2023-01-12	3.17	3.39	3.15	3.4	0.006	1.01	0.0	0.05	18.20	0.01	2.298	6.33	1.28	5.3	94.2	0.5	-2.58	0.69	0.75	1.41	3.4	0.003	0.61	0.0	0.04	18.27	0.00	2.172	8.91	3.63	5.3	94.7	0.0	0.49	0.28	0.70	0.77	1.36	9780	1263	2	0	1	0	0	logfile
✔	8FTE	29424	2024-02-16	2023-01-12	3.8	3.91	3.67	3.8	0.003	0.63	0.0	0.04	12.35	0.00	2.203	12.31	5.56	3.4	96.6	0.0	0.06	0.48	0.50	0.06	3.8	0.003	0.71	0.0	0.04	14.54	0.00	2.128	7.29	5.11	6.0	94.0	0.0	1.70	1.58	0.55	0.56	0.45	14564	2046	22	0	0	0	0	logfile
✔	8C6J	16452	2024-02-14	2023-01-12	2.8	3.35	2.78	2.6	0.003	0.52	1.0	0.04	15.46	0.00	1.589	7.77	0.06	2.6	97.4	0.0	1.31	0.69	0.71	3.35	2.6	0.007	0.64	0.0	0.05	16.04	0.00	1.857	9.49	1.02	3.9	96.1	0.0	1.73	0.37	0.75	0.82	3.21	111233	16794	69	460	18	0	0	logfile
✔	8i0Z	35114	2024-02-15	2023-01-12	4.33	4.58	4.36	4.4	0.007	0.91	0.0	0.05	12.71	0.01	2.066	6.59	0.29	6.8	93.2	0.0	-1.50	0.78	0.71	—	4.4	0.004	0.70	0.0	0.04	12.74	0.00	2.126	11.35	0.00	8.4	91.6	0.0	-0.96	2.55	0.77	0.71	—	13163	1725	12	0	0	0	0	logfile
✔	8i10	35115	2024-02-15	2023-01-12	3.96	4.21	4.00	4.2	0.006	0.95	0.0	0.06	13.99	0.01	2.172	8.83	0.58	6.4	93.6	0.0	-1.07	0.76	0.78	2.85	4.2	0.005	0.74	0.0	0.04	14.97	0.00	2.161	10.91	4.56	6.8	93.2	0.0	-0.54	0.51	0.78	0.80	1.93	13196	1729	12	0	0	0	0	logfile
✔	8i0Q	35106	2024-02-14	2023-01-11	4.45	4.83	5.07	4.4	0.003	0.59	0.0	0.04	12.56	0.00	2.167	9.44	0.00	5.1	94.9	0.0	-1.41	0.82	0.81	—	4.4	0.003	0.63	0.0	0.04	13.26	0.00	2.191	13.46	0.00	7.1	92.9	0.0	-1.19	0.43	0.83	0.83	—	8842	1192	8	0	0	0	0	logfile
✔	8FTD	29423	2024-02-22	2023-01-11	2.76	3.03	2.90	3.1	0.003	0.58	0.0	0.04	17.82	0.00	2.126	9.45	2.88	4.5	95.5	0.1	0.05	0.56	0.69	1.71	3.0	0.004	0.61	0.0	0.04	19.01	0.00	2.153	6.66	1.99	5.5	94.5	0.0	-0.09	1.06	0.68	0.86	2.46	32529	3823	13	117	6	0	0	logfile
✔	8FSZ	29422	2024-02-16	2023-01-11	3.79	3.93	3.74	3.7	0.015	1.24	0.0	0.23	16.72	0.01	2.443	5.44	0.00	7.5	92.5	0.0	-2.04	0.75	0.78	1.82	3.7	0.003	1.02	0.0	0.09	18.29	0.00	2.156	8.64	2.17	5.0	95.0	0.0	-0.39	1.28	0.78	0.84	2.64	16690	1975	10	0	20	0	0	logfile
✔	8FSJ	29419	2024-02-14	2023-01-10	3.65	3.93	3.70	3.9	0.004	0.69	0.0	0.05	16.99	0.00	1.974	7.82	0.00	6.3	93.7	0.0	-1.15	0.70	0.74	1.70	3.9	0.003	0.67	0.0	0.04	14.27	0.00	2.119	9.44	2.96	6.1	93.9	0.0	-1.09	0.99	0.71	0.75	1.55	9855	1257	16	0	28	0	0	logfile
✔	8FSP	29421	2024-02-16	2023-01-10	3.79	3.87	3.58	3.8	0.015	1.50	0.0	0.06	14.88	0.01	2.428	4.79	0.00	4.5	95.5	0.0	-1.60	0.78	0.81	2.38	3.7	0.004	1.25	0.0	0.04	16.04	0.00	2.193	7.84	1.36	3.7	96.3	0.0	0.08	1.20	0.80	0.84	2.72	16685	1975	10	0	20	0	0	logfile
✔	8C5R	16441	2024-02-19	2023-01-10	3.7	3.73	3.75	3.7	0.003	0.59	0.0	0.04	8.09	0.00	0.567	18.93	0.00	3.1	96.6	0.3	-3.20	0.43	0.38	0.84	3.7	0.005	0.71	0.0	0.05	13.78	0.00	2.094	13.86	2.40	5.7	94.3	0.0	-1.25	1.25	0.60	0.69	1.56	24969	3178	3	0	0	0	0	logfile
✔	8C5U	16443	2024-02-15	2023-01-10	3.62	3.71	3.65	3.7	0.005	0.77	0.0	0.05	18.43	0.00	2.189	7.66	0.00	3.0	97.0	0.0	1.11	0.78	0.81	1.61	3.7	0.004	0.61	0.0	0.04	19.09	0.00	2.194	8.98	1.50	3.2	96.8	0.0	0.74	1.07	0.78	0.82	1.63	11419	1248	6	71	1	0	0	logfile
✔	8C5S	16442	2024-02-15	2023-01-10	3.75	3.51	3.79	3.7	0.007	1.04	0.0	0.09	18.48	0.01	1.842	7.99	0.00	4.1	95.9	0.0	0.62	0.66	0.78	2.02	3.7	0.004	0.59	0.0	0.04	19.20	0.00	2.184	8.99	2.42	5.2	94.6	0.2	0.34	1.03	0.66	0.79	1.76	11312	1260	6	62	1	0	0	logfile
✔	8C5Y	16444	2024-02-21	2023-01-10	3.35	3.63	3.46	3.6	0.004	0.71	0.0	0.05	14.44	0.00	2.111	8.14	0.18	3.4	96.3	0.3	0.01	0.70	0.75	2.46	3.6	0.004	0.61	0.0	0.05	16.36	0.00	2.180	7.85	1.72	3.9	95.9	0.2	0.14	0.47	0.73	0.84	2.08	15198	1868	16	0	4	0	0	logfile
✔	8C5Z	16445	2024-02-21	2023-01-10	3.8	4.17	3.98	4.1	0.004	0.70	0.0	0.05	14.17	0.00	2.063	12.18	0.17	3.1	96.7	0.2	-0.10	0.76	0.72	0.95	4.1	0.003	0.68	0.0	0.05	16.48	0.00	2.122	11.85	2.24	3.0	96.8	0.2	0.07	0.78	0.80	0.80	1.05	16615	2044	16	0	4	0	0	logfile

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