Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i03	35093	2024-02-21	2023-01-10	3.2	3.33	3.12	3.2	0.010	0.90	0.0	0.05	19.65	0.01	1.837	16.34	15.70	7.2	92.7	0.1	-2.95	0.77	0.83	2.25	3.2	0.002	0.58	0.0	0.04	17.96	0.00	2.112	8.92	3.49	3.7	96.3	0.0	0.61	1.25	0.77	0.85	2.04	29430	3638	13	0	6	0	0	logfile
✔	8C60	16449	2024-02-14	2023-01-10	3.4	2.44	3.66	3.2	0.004	0.78	0.0	0.05	17.71	0.01	1.750	16.32	0.80	3.4	96.6	0.0	-0.10	0.71	0.70	1.68	2.1	0.003	0.73	0.0	0.04	18.53	0.00	2.020	16.71	3.27	3.3	96.7	0.0	0.51	1.68	0.72	0.73	1.88	10393	1280	6	0	7	0	0	logfile
✔	8C5Z	16445	2024-02-21	2023-01-10	3.8	4.17	3.98	4.1	0.004	0.70	0.0	0.05	14.17	0.00	2.063	12.18	0.17	3.1	96.7	0.2	-0.10	0.76	0.72	0.95	4.1	0.003	0.68	0.0	0.05	16.48	0.00	2.122	11.85	2.24	3.0	96.8	0.2	0.07	0.78	0.80	0.80	1.05	16615	2044	16	0	4	0	0	logfile
✔	8FS6	29415	2024-02-18	2023-01-09	2.9	3.17	3.02	3.2	0.004	0.68	0.0	0.05	18.46	0.00	2.045	8.16	2.53	3.6	96.4	0.0	-0.78	0.62	0.81	2.33	3.2	0.003	0.57	0.0	0.04	18.70	0.00	1.894	9.32	4.38	3.4	96.6	0.0	0.01	1.24	0.65	0.84	2.51	22246	2621	16	58	9	0	0	logfile
✔	8FS8	29417	2024-02-18	2023-01-09	3.04	3.37	3.15	3.3	0.002	0.53	0.0	0.04	14.33	0.00	2.003	9.25	3.29	3.1	96.9	0.0	0.66	0.66	0.75	2.11	3.3	0.004	0.58	0.0	0.04	17.17	0.00	1.885	11.91	3.29	4.8	95.2	0.0	0.08	1.01	0.70	0.79	1.88	21906	2582	16	55	9	0	0	logfile
✔	8FS7	29416	2024-02-18	2023-01-09	2.85	3.12	2.96	3.1	0.003	0.56	0.0	0.04	19.01	0.00	2.068	6.91	2.37	3.4	96.6	0.0	0.67	0.68	0.84	2.77	3.1	0.002	0.53	0.0	0.04	19.20	0.00	1.967	8.14	3.80	3.5	96.5	0.0	1.05	0.34	0.71	0.87	2.89	22195	2616	16	58	9	0	0	logfile
✔	8FS5	29414	2024-02-18	2023-01-09	2.76	3.04	2.87	3.1	0.003	0.69	0.0	0.04	18.41	0.00	2.057	7.28	1.77	3.6	96.4	0.0	-0.31	0.61	0.81	2.53	3.1	0.003	0.54	0.0	0.04	18.82	0.00	1.970	8.77	3.16	3.5	96.5	0.0	0.26	0.35	0.63	0.84	2.87	22211	2619	16	58	9	0	0	logfile
✔	8FS3	29412	2024-02-18	2023-01-09	2.93	3.16	3.03	3.2	0.004	0.68	0.0	0.05	18.52	0.00	1.912	11.60	4.30	4.2	95.8	0.0	0.21	0.66	0.81	2.12	3.2	0.003	0.58	0.0	0.04	18.69	0.00	1.928	11.06	4.00	4.2	95.8	0.0	0.62	1.22	0.67	0.83	2.11	21222	2572	15	27	9	0	0	logfile
✔	8FRW	29409	2024-02-16	2023-01-09	2.92	3.40	2.85	3.2	0.013	1.02	0.0	0.23	16.37	0.01	2.312	2.81	0.11	1.5	98.5	0.0	0.72	0.80	0.84	2.23	3.2	0.003	1.00	0.0	0.09	17.69	0.00	2.155	3.83	1.14	1.9	98.1	0.0	1.37	0.60	0.79	0.86	2.80	16680	1975	15	0	20	5	0	logfile
✔	8FS4	29413	2024-02-18	2023-01-09	2.94	3.30	3.09	3.3	0.004	0.65	0.0	0.05	18.51	0.00	1.835	9.66	2.69	3.6	96.4	0.0	-0.22	0.66	0.78	1.97	3.3	0.004	0.63	0.0	0.04	18.80	0.00	1.927	11.31	2.91	3.4	96.6	0.0	0.30	0.49	0.64	0.79	2.15	21291	2539	16	42	9	0	0	logfile
✔	8FRX	29410	2024-02-16	2023-01-09	2.7	3.26	2.58	3.0	0.014	1.37	0.0	0.05	13.29	0.00	2.253	3.29	0.00	3.1	96.9	0.0	0.20	0.80	0.85	3.56	3.0	0.004	1.26	0.0	0.05	14.69	0.00	2.239	5.08	1.84	3.3	96.7	0.0	0.52	0.37	0.81	0.87	3.45	16670	1975	10	0	20	0	0	logfile
✔	8HZX	35091	2024-02-19	2023-01-09	2.68	2.91	2.72	2.8	0.006	0.77	0.0	0.06	15.72	0.00	2.107	8.72	0.00	6.4	93.4	0.2	-1.13	0.80	0.86	3.94	2.8	0.003	0.58	0.0	0.05	16.27	0.00	2.124	6.98	2.10	6.8	92.8	0.4	-0.44	1.49	0.79	0.86	3.95	25320	3180	6	0	0	0	0	logfile
✔	8HZS	35090	2024-02-13	2023-01-09	3.3	3.29	2.27	3.5	0.003	0.55	0.0	0.05	11.89	0.00	2.235	15.06	0.00	7.1	92.9	0.0	-5.68	0.40	0.80	4.81	3.5	0.005	0.71	0.0	0.05	13.23	0.00	2.155	8.25	7.50	11.3	88.7	0.0	-4.22	1.12	0.40	0.81	4.10	2376	348	6	0	0	0	0	logfile
✔	8C5i	16437	2024-02-20	2023-01-09	3.15	3.22	—	3.2	0.004	0.56	0.0	0.04	16.20	0.00	1.942	3.57	0.12	5.1	94.7	0.2	-0.98	0.64	0.85	4.24	3.2	0.004	0.55	0.0	0.04	16.62	0.00	1.947	4.38	1.07	4.9	94.7	0.4	-0.82	0.26	0.64	0.85	3.95	89156	5706	18	0	0	0	43742	logfile
✔	8HZB	35087	2024-02-13	2023-01-08	3.2	3.13	2.70	3.3	0.008	0.92	0.0	0.06	16.62	0.00	2.162	16.73	0.00	10.3	89.7	0.0	-4.16	0.34	0.74	2.17	3.3	0.003	0.66	0.0	0.05	18.42	0.00	2.194	8.37	4.33	11.8	88.2	0.0	-2.75	0.44	0.33	0.74	2.17	2976	432	6	0	0	0	0	logfile
✔	8FRS	29406	2024-02-21	2023-01-08	3.96	3.29	3.03	3.2	0.002	0.54	0.0	0.04	14.45	0.00	2.208	5.19	0.00	7.1	92.6	0.3	-1.68	0.40	0.86	3.34	3.2	0.002	0.56	0.0	0.04	15.83	0.00	2.205	5.62	1.14	7.6	92.2	0.2	-1.61	0.29	0.41	0.87	2.85	31497	4120	14	0	0	0	0	logfile
✔	8FRP	29404	2024-02-13	2023-01-07	3.8	4.05	3.81	4.0	0.002	0.43	0.0	0.04	13.74	0.00	2.290	4.81	0.00	1.9	98.1	0.0	-1.11	0.64	0.74	1.40	4.0	0.003	0.73	0.0	0.04	17.10	0.00	2.199	13.98	3.54	2.4	97.6	0.0	1.28	1.01	0.64	0.83	1.09	7488	934	5	0	21	0	0	logfile
✔	8HYA	35085	2024-02-16	2023-01-06	3.4	3.97	3.56	3.9	0.004	0.71	0.0	0.04	13.95	0.01	2.242	13.12	0.00	5.9	94.1	0.0	0.88	0.62	0.77	1.40	3.9	0.003	0.64	0.0	0.04	16.28	0.00	2.220	12.04	3.25	5.9	94.1	0.0	1.21	0.44	0.58	0.74	1.02	14586	1856	4	0	6	0	0	logfile
✔	8C54	16433	2024-02-16	2023-01-06	2.52	2.38	2.49	2.5	0.004	0.56	0.0	0.04	18.81	0.00	2.233	6.25	3.43	2.2	97.8	0.0	0.62	0.72	0.84	4.48	2.5	0.002	0.43	0.0	0.04	17.14	0.00	2.146	6.35	1.87	1.9	98.1	0.0	0.88	0.16	0.71	0.84	5.15	14266	1928	12	0	4	330	0	logfile
✔	8FR6	29396	2024-02-18	2023-01-06	2.5	3.15	2.54	2.9	0.005	0.79	0.0	0.05	22.07	0.00	2.125	3.16	0.98	2.5	97.5	0.0	0.44	0.80	0.79	3.20	2.9	0.004	0.69	0.0	0.04	15.02	0.00	2.123	8.04	2.01	3.1	96.8	0.1	0.58	0.49	0.80	0.86	3.39	21237	2448	60	0	159	0	0	logfile

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