Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FR6	29396	2024-02-18	2023-01-06	2.5	3.15	2.54	2.9	0.005	0.79	0.0	0.05	22.07	0.00	2.125	3.16	0.98	2.5	97.5	0.0	0.44	0.80	0.79	3.20	2.9	0.004	0.69	0.0	0.04	15.02	0.00	2.123	8.04	2.01	3.1	96.8	0.1	0.58	0.49	0.80	0.86	3.39	21237	2448	60	0	159	0	0	logfile
✔	8HYJ	35086	2024-02-20	2023-01-06	4.3	6.01	4.31	3.1	0.015	1.48	32.0	0.10	17.34	0.01	2.155	10.48	2.39	6.5	93.5	0.0	-2.61	0.80	0.54	—	3.1	0.003	0.71	0.0	0.04	16.38	0.00	2.023	19.19	0.00	6.1	93.8	0.1	-1.01	1.08	0.89	0.73	—	28568	3529	21	83	5	0	0	logfile
✔	8HY0	35084	2024-02-20	2023-01-05	3.1	2.99	3.01	3.0	0.007	0.96	0.0	0.05	23.11	0.01	2.090	13.59	0.00	4.3	95.7	0.0	-1.87	0.65	0.70	2.26	3.0	0.004	0.60	0.0	0.04	23.70	0.00	2.155	11.01	2.58	2.7	97.3	0.0	0.96	1.20	0.75	0.82	2.44	28821	2691	19	340	7	0	0	logfile
✔	8HXX	35081	2024-02-16	2023-01-05	3.0	3.66	3.03	3.3	0.005	0.98	0.0	0.05	16.31	0.01	1.982	9.53	0.18	3.1	96.9	0.0	-1.25	0.78	0.82	2.44	3.4	0.004	0.99	1.0	0.04	17.07	0.00	1.804	13.75	2.69	2.7	97.3	0.1	1.15	0.51	0.78	0.85	2.54	14873	1817	10	0	7	0	0	logfile
✔	8HXZ	35083	2024-02-15	2023-01-05	3.4	4.97	3.38	2.8	0.005	0.98	0.0	0.05	29.12	0.01	2.303	7.66	0.00	3.0	97.0	0.0	-1.57	0.89	0.77	0.71	2.8	0.004	0.80	0.0	0.04	28.81	0.00	2.146	19.89	2.32	3.2	96.8	0.0	-0.14	1.27	0.92	0.86	0.43	13740	879	11	328	0	0	0	logfile
✔	8HXY	35082	2024-02-19	2023-01-05	3.1	3.10	3.10	3.2	0.007	0.94	0.0	0.05	23.63	0.01	2.090	13.36	0.10	4.4	95.6	0.0	-1.84	0.65	0.67	2.39	3.1	0.005	0.62	0.0	0.04	24.21	0.00	2.087	11.08	2.90	2.9	97.1	0.0	0.81	0.66	0.74	0.81	2.59	26263	2380	17	340	5	0	0	logfile
✔	8HXK	35079	2024-02-14	2023-01-04	3.8	4.30	4.02	4.0	0.005	1.00	0.0	0.06	14.61	0.01	2.159	12.80	0.00	9.1	90.9	0.0	-2.65	0.74	0.49	0.10	4.0	0.003	0.77	0.0	0.05	16.47	0.00	2.086	21.44	2.93	9.9	90.0	0.1	-2.20	1.61	0.82	0.71	0.57	10340	1273	6	0	9	0	0	logfile
✔	8HXJ	35078	2024-02-20	2023-01-04	3.5	3.64	3.70	3.6	0.004	0.67	0.0	0.05	13.25	0.02	1.242	12.08	0.00	9.4	90.6	0.0	-1.89	0.80	0.83	3.09	3.5	0.003	0.60	0.0	0.05	14.52	0.00	2.101	9.90	1.86	9.8	90.1	0.1	-1.37	0.32	0.81	0.85	2.74	27639	3399	30	0	81	0	0	logfile
✔	8BV5	16255	2024-02-13	2023-01-04	3.54	2.97	3.43	3.9	0.003	0.66	0.0	0.05	19.37	0.00	1.934	17.97	0.59	5.7	94.3	0.0	-0.26	0.67	0.65	1.40	3.8	0.003	0.66	0.0	0.04	19.21	0.00	1.918	14.76	5.57	6.1	93.7	0.1	-0.34	0.63	0.67	0.66	1.22	6296	767	4	0	3	0	0	logfile
✔	8HXA	35074	2024-02-16	2023-01-04	3.04	3.23	3.02	3.2	0.005	1.06	0.0	0.06	15.67	0.01	2.023	5.42	0.18	5.1	94.6	0.3	-0.78	0.68	0.80	2.73	3.2	0.005	0.65	0.0	0.05	16.80	0.00	2.205	10.87	3.89	4.8	94.8	0.3	-0.69	0.42	0.67	0.82	3.95	14790	1842	12	0	0	0	0	logfile
✔	8FPF	29362	2024-02-18	2023-01-04	3.27	2.55	3.31	3.0	0.008	0.89	0.0	0.04	20.44	0.02	2.235	5.93	0.00	6.9	93.1	0.0	-0.57	0.78	0.75	1.36	3.0	0.003	0.54	0.0	0.04	17.89	0.00	2.059	9.20	0.87	6.2	93.8	0.0	0.20	1.19	0.80	0.79	1.06	20478	1224	4	0	27	0	9854	logfile
✔	8HXC	35076	2024-02-17	2023-01-04	3.12	3.40	3.39	3.4	0.007	1.20	0.0	0.07	16.37	0.01	2.277	5.40	1.05	6.9	93.1	0.0	-1.46	0.64	0.75	2.25	3.4	0.003	0.68	0.0	0.04	16.69	0.00	2.227	8.63	3.26	6.9	93.0	0.1	-1.25	0.64	0.71	0.83	2.80	17374	2149	14	0	0	0	0	logfile
✔	8HXB	35075	2024-02-16	2023-01-04	2.7	2.94	2.73	3.1	0.007	1.15	6.0	0.07	16.22	0.01	2.277	5.31	1.64	6.9	93.1	0.0	-1.43	0.56	0.69	2.89	3.1	0.004	0.67	0.0	0.05	17.09	0.00	2.259	8.45	4.80	6.4	93.6	0.0	-0.69	0.52	0.69	0.82	3.33	14892	1842	12	0	0	0	0	logfile
✔	8C4V	16430	2024-02-15	2023-01-04	3.14	3.23	3.09	3.2	0.007	1.01	7.0	0.07	19.43	0.01	1.935	13.76	2.51	4.3	95.7	0.0	-0.71	0.74	0.81	2.54	3.2	0.004	0.60	0.0	0.04	19.42	0.00	1.938	13.23	4.06	4.0	96.0	0.0	0.45	1.14	0.73	0.81	2.46	11731	1308	7	56	1	0	0	logfile
✔	8C4S	16427	2024-02-14	2023-01-04	3.27	3.46	3.25	3.3	0.005	0.85	6.0	0.05	15.99	0.00	2.258	8.25	1.24	2.9	96.9	0.2	1.15	0.82	0.85	2.80	3.3	0.003	0.53	0.0	0.04	16.23	0.00	2.189	8.06	2.47	2.7	97.1	0.2	1.67	0.35	0.82	0.86	3.08	10292	1277	1	0	0	0	0	logfile
✔	8FPJ	29366	2024-02-19	2023-01-04	2.74	2.94	2.78	3.0	0.004	0.69	0.0	0.04	14.26	0.00	2.008	5.89	0.00	5.7	94.3	0.0	-0.24	0.69	0.82	2.96	3.0	0.003	0.54	0.0	0.04	16.91	0.00	1.996	4.89	1.05	5.3	94.7	0.0	0.45	0.94	0.71	0.85	2.65	25960	1596	6	0	1	0	13143	logfile
✔	8C4C	16424	2024-02-13	2023-01-03	2.7	1.97	2.55	2.5	0.004	0.59	0.0	0.04	15.85	0.00	1.875	3.52	0.89	2.3	97.6	0.1	1.30	0.63	0.80	4.55	2.3	0.004	0.62	0.0	0.04	16.93	0.00	1.779	4.66	2.18	3.1	96.8	0.1	0.88	0.95	0.69	0.83	4.36	56092	3584	20	0	24	0	27792	logfile
✔	8FoU	29354	2024-02-19	2023-01-03	3.3	3.70	3.37	3.7	0.003	0.60	0.0	0.04	16.43	0.00	0.843	25.35	0.00	4.8	95.2	0.0	-2.68	0.72	0.85	2.90	3.7	0.005	0.64	0.0	0.05	16.83	0.00	2.192	12.56	4.13	6.3	93.7	0.0	-2.23	0.42	0.73	0.86	1.98	23280	3048	24	0	0	0	0	logfile
✔	8FoP	29353	2024-02-13	2023-01-03	3.2	3.58	6.51	3.5	0.003	0.56	0.0	0.04	13.33	0.00	2.078	9.63	0.05	7.1	92.3	0.6	-0.82	0.51	0.79	2.41	3.5	0.006	0.84	2.0	0.05	15.76	0.01	2.045	11.49	3.23	9.8	89.8	0.4	-1.39	0.45	0.54	0.83	2.26	55484	7283	30	0	0	0	0	logfile
✔	8C4E	16425	2024-02-13	2023-01-03	2.6	2.28	2.42	2.4	0.005	0.66	0.0	0.04	16.88	0.00	1.847	4.09	1.13	2.5	97.4	0.1	0.56	0.71	0.86	5.33	2.4	0.004	0.62	0.0	0.04	16.97	0.00	1.779	5.22	1.85	2.6	97.3	0.1	0.91	0.87	0.71	0.86	5.12	57100	3648	20	0	24	0	28304	logfile

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