Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HSG	34996	2024-02-19	2022-12-19	3.2	3.75	3.14	3.3	0.003	0.59	0.0	0.04	15.67	0.00	2.059	12.05	0.00	5.3	94.7	0.0	-0.30	0.85	0.83	1.70	3.4	0.003	0.59	0.0	0.04	17.03	0.00	2.044	11.83	1.77	5.7	94.3	0.0	0.01	1.12	0.86	0.85	1.83	24636	2923	9	76	2	0	0	logfile
✔	8HSH	34997	2024-02-18	2022-12-19	3.4	4.05	3.31	3.5	0.004	0.70	0.0	0.05	13.14	0.01	2.046	15.38	0.08	6.1	93.9	0.0	-0.86	0.86	0.79	1.42	3.5	0.003	0.62	0.0	0.04	15.18	0.00	2.012	13.77	1.61	5.5	94.5	0.0	-0.30	1.17	0.86	0.80	1.29	23072	2923	6	0	3	0	0	logfile
✔	8FiX	29212	2024-02-19	2022-12-17	3.9	4.15	3.95	3.9	0.003	0.69	0.0	0.05	14.47	0.00	1.933	14.02	0.07	12.8	87.1	0.2	-2.81	0.79	0.65	0.34	3.9	0.003	0.68	0.0	0.04	16.27	0.00	1.951	13.07	1.95	5.6	94.4	0.0	-0.67	1.57	0.81	0.70	0.37	25943	3185	9	49	3	0	0	logfile
✔	8FiS	29209	2024-02-18	2022-12-16	3.18	3.36	3.47	3.5	0.006	0.83	1.0	0.05	19.55	0.00	2.110	3.15	0.25	5.5	94.5	0.0	-0.93	0.80	0.80	2.46	3.5	0.003	0.63	0.0	0.04	14.36	0.00	2.063	7.18	2.60	5.5	94.5	0.0	-0.40	0.62	0.80	0.84	2.41	20356	2357	57	0	142	0	0	logfile
✔	8C0B	16357	2024-02-21	2022-12-16	3.98	2.77	4.01	2.1	0.003	0.79	0.0	0.05	12.77	0.01	2.172	3.80	0.51	3.9	95.9	0.2	-0.95	0.69	0.68	2.06	2.1	0.005	0.92	2.0	0.05	16.03	0.01	1.852	15.61	3.28	3.7	96.3	0.0	0.15	1.34	0.70	0.69	1.49	29816	3768	8	0	0	0	0	logfile
✔	8HRU	34980	2024-02-13	2022-12-16	3.9	4.26	4.10	4.1	0.006	0.98	0.0	0.05	17.40	0.01	2.000	22.29	0.38	3.9	96.1	0.0	-1.28	0.75	0.69	0.45	4.1	0.003	0.76	0.0	0.05	18.02	0.00	2.081	20.18	2.47	4.9	95.1	0.0	-0.13	0.64	0.75	0.70	0.49	4870	597	1	0	0	0	0	logfile
✔	8HS2	34983	2024-02-13	2022-12-16	3.08	3.85	3.16	3.6	0.004	0.78	0.0	0.05	14.96	0.01	2.192	7.16	0.17	4.7	95.3	0.0	0.10	0.67	0.87	3.05	3.6	0.003	0.63	0.0	0.04	15.23	0.00	2.219	12.38	1.65	4.8	95.2	0.0	0.85	0.89	0.68	0.87	2.74	5456	716	3	0	0	0	0	logfile
✔	8HS3	34984	2024-02-14	2022-12-16	3.14	3.64	3.25	3.6	0.005	0.75	0.0	0.05	16.98	0.01	2.141	7.14	0.36	5.6	94.4	0.0	-1.38	0.55	0.78	2.00	3.6	0.003	0.56	0.0	0.04	17.31	0.00	2.157	9.87	4.63	4.3	95.7	0.0	-0.20	0.29	0.54	0.77	1.99	8258	1124	5	0	0	0	0	logfile
✔	8C0E	16364	2024-02-17	2022-12-16	3.6	3.52	3.40	3.7	0.004	0.72	0.0	0.04	18.45	0.01	2.166	10.30	0.77	3.1	96.5	0.4	1.91	0.61	0.73	1.86	3.7	0.003	0.54	0.0	0.03	18.81	0.01	2.234	8.71	3.56	2.6	97.1	0.4	2.38	1.27	0.69	0.82	2.14	18385	2301	8	0	0	0	0	logfile
✔	8C07	16356	2024-02-13	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	3.2	0.003	0.63	0.0	0.04	17.14	0.00	2.275	8.83	3.02	8.3	91.7	0.0	-1.13	0.38	0.78	0.74	1.61	4974	644	5	0	1	0	0	logfile
✔	8HRY	34982	2024-02-13	2022-12-16	3.11	3.51	3.06	3.4	0.003	0.66	0.0	0.04	15.76	0.01	2.228	9.30	0.74	4.9	95.1	0.0	0.28	0.54	0.84	2.28	3.4	0.003	0.66	0.0	0.04	16.27	0.00	2.209	9.21	4.59	5.2	94.8	0.0	0.37	0.23	0.54	0.84	2.30	6016	782	4	0	0	0	0	logfile
✔	8HRX	34981	2024-02-13	2022-12-16	2.89	3.36	2.88	3.4	0.003	0.70	0.0	0.05	16.54	0.00	1.709	10.40	3.52	6.6	93.1	0.3	0.01	0.59	0.86	3.16	3.4	0.003	0.66	0.0	0.04	16.95	0.00	2.186	9.32	3.67	7.3	92.7	0.0	-0.05	0.89	0.58	0.85	2.73	6013	780	4	0	0	0	0	logfile
✔	8FHW	29172	2024-02-20	2022-12-15	3.2	3.30	3.00	3.2	0.006	0.64	0.0	0.05	14.68	0.00	2.161	4.14	0.00	3.8	95.7	0.5	-0.11	0.79	0.82	4.11	3.2	0.003	0.49	0.0	0.04	15.60	0.00	2.165	3.92	1.22	3.6	96.4	0.0	0.93	0.33	0.82	0.85	3.71	26376	1728	12	4	4	0	12732	logfile
✔	8HRM	34978	2024-02-13	2022-12-15	2.56	2.74	2.64	3.1	0.005	0.82	0.0	0.05	15.72	0.00	2.138	18.48	4.07	6.0	93.2	0.9	-1.82	0.70	0.79	4.89	3.1	0.004	0.82	0.0	0.05	15.90	0.01	2.109	11.20	4.65	4.5	95.5	0.0	-2.00	0.71	0.69	0.78	4.00	3567	476	8	0	0	19	0	logfile
✔	8HRG	34972	2024-02-14	2022-12-15	4.5	4.83	4.51	4.6	0.003	0.70	0.0	0.05	12.33	0.00	2.127	11.61	0.00	7.0	92.7	0.3	-0.76	0.85	0.83	—	4.6	0.003	0.59	0.0	0.04	12.40	0.00	2.181	12.33	0.00	7.0	92.7	0.3	-0.42	1.50	0.85	0.84	—	61173	7854	21	0	0	0	0	logfile
✔	8HRJ	34975	2024-02-19	2022-12-15	3.1	3.46	3.33	3.4	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.91	0.26	4.9	94.8	0.3	-0.13	0.47	0.42	0.70	3.4	0.003	0.67	0.0	0.04	15.90	0.01	2.178	7.62	1.75	5.7	94.2	0.1	-0.57	1.74	0.66	0.78	1.53	24531	3126	3	0	0	0	0	logfile
✔	8HRK	34976	2024-02-13	2022-12-15	3.3	3.56	3.36	3.6	0.005	0.71	0.0	0.04	16.73	0.01	2.273	5.11	0.14	3.2	96.8	0.0	-1.80	0.67	0.74	1.69	3.6	0.002	0.55	0.0	0.04	17.43	0.00	2.213	4.55	1.73	3.0	97.0	0.0	-0.76	1.69	0.67	0.80	2.38	6412	791	2	0	0	0	0	logfile
✔	8HRi	34974	2024-02-19	2022-12-15	2.9	3.08	2.94	3.1	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.76	0.26	4.9	94.8	0.3	-0.13	0.39	0.39	0.61	3.1	0.003	0.65	0.0	0.04	16.24	0.01	2.130	6.86	1.53	5.6	94.3	0.0	-0.71	1.06	0.59	0.77	1.67	24531	3126	3	0	0	0	0	logfile
✔	8C03	16354	2024-02-13	2022-12-15	3.89	4.09	3.71	4.1	0.007	0.86	0.0	0.04	12.87	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.003	0.67	0.0	0.04	16.22	0.00	2.173	14.66	3.06	1.9	98.1	0.0	2.48	1.49	0.56	0.78	1.07	3330	429	1	0	1	0	0	logfile
✔	8C01	16349	2024-02-18	2022-12-15	2.7	3.36	—	2.7	0.009	0.86	0.0	0.06	20.55	0.01	2.038	3.08	0.79	3.5	96.2	0.3	-0.87	0.89	0.91	4.37	2.7	0.006	0.68	0.0	0.04	20.51	0.00	1.900	4.62	1.77	3.9	95.9	0.1	0.53	1.07	0.90	0.91	3.28	72685	5115	32	1545	1	0	0	logfile

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