Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HTi	35010	2024-02-13	2022-12-21	2.97	2.25	2.98	3.1	0.004	0.60	0.0	0.04	15.49	0.00	2.277	5.96	0.00	3.0	97.0	0.0	0.28	0.79	0.85	2.60	3.1	0.003	0.52	0.0	0.04	16.52	0.00	2.119	4.59	2.49	2.9	97.1	0.0	0.87	0.35	0.78	0.85	2.36	7390	962	6	0	1	0	0	logfile
✔	8HTT	35017	2024-02-13	2022-12-21	3.6	4.33	3.64	4.1	0.005	0.69	0.0	0.09	19.58	0.00	2.197	27.23	0.58	6.0	94.0	0.0	1.48	0.66	0.82	2.08	4.1	0.003	0.67	0.0	0.04	15.86	0.00	2.231	8.87	2.90	6.5	93.5	0.0	1.06	2.62	0.66	0.83	1.69	3292	389	5	0	8	0	0	logfile
✔	8FKX	29260	2024-02-20	2022-12-21	2.59	2.79	2.72	1.7	0.003	0.55	0.0	0.04	20.01	0.00	1.961	1.77	0.01	1.2	98.8	0.0	1.69	0.79	0.82	3.59	1.7	0.006	0.58	0.0	0.04	20.30	0.00	1.844	5.05	1.58	2.3	97.7	0.0	1.57	1.14	0.80	0.87	3.25	138643	10793	67	2472	65	0	0	logfile
✔	8FK0	29247	2024-02-15	2022-12-20	4.0	4.01	3.66	3.9	0.003	0.56	0.0	0.04	11.08	0.00	2.069	9.71	0.14	2.6	97.4	0.0	0.90	0.47	0.82	—	3.9	0.003	0.57	0.0	0.04	13.37	0.00	2.051	9.29	2.70	3.2	96.8	0.0	0.66	1.16	0.47	0.83	—	12628	1848	14	0	0	0	0	logfile
✔	8FJP	29245	2024-02-19	2022-12-20	3.3	3.44	3.57	3.4	0.004	0.88	0.0	0.06	17.12	0.01	2.224	6.09	0.67	5.7	94.3	0.0	-1.82	0.76	0.80	2.40	3.4	0.004	0.66	0.0	0.05	18.09	0.00	2.086	11.84	5.42	6.8	93.2	0.0	-1.25	0.46	0.76	0.81	2.28	23390	2932	3	0	3	0	0	logfile
✔	8BVW	16274	2024-02-20	2022-12-20	4.0	3.84	3.33	3.4	0.006	0.90	0.0	0.05	17.06	0.01	1.730	5.60	0.06	3.1	96.9	0.0	-0.71	0.71	0.56	—	3.4	0.004	0.61	0.0	0.04	18.66	0.00	1.973	11.02	1.10	2.7	97.3	0.0	0.82	0.61	0.71	0.57	—	84783	9510	54	412	46	0	0	logfile
✔	8C1B	16377	2024-02-15	2022-12-20	3.8	4.32	3.79	3.9	0.007	1.31	2.0	0.07	16.55	0.01	2.045	3.20	0.28	4.2	95.5	0.2	-0.06	0.76	0.70	0.87	3.9	0.003	0.59	0.0	0.04	14.12	0.00	1.919	10.31	0.70	3.7	96.3	0.0	0.88	0.56	0.78	0.73	1.42	12675	807	7	0	16	0	6106	logfile
✔	8HSR	35004	2024-02-24	2022-12-20	4.0	4.38	—	3.1	0.005	0.80	0.0	0.05	15.15	0.01	1.243	24.75	0.02	6.7	93.1	0.2	-0.72	0.73	0.54	—	3.0	0.003	0.70	0.0	0.04	16.74	0.00	1.881	19.11	1.68	5.6	94.3	0.1	-0.33	0.52	0.88	0.81	—	42577	5143	21	95	21	0	0	logfile
✔	8C1C	16378	2024-02-17	2022-12-20	4.1	5.17	4.18	4.0	0.008	1.21	1.0	0.06	14.93	0.01	2.072	2.46	0.00	3.2	96.7	0.2	-0.23	0.87	0.71	—	4.0	0.004	0.65	0.0	0.04	12.69	0.00	1.867	14.14	0.00	6.2	93.8	0.0	-0.01	1.56	0.88	0.75	—	19267	1237	13	0	28	0	9284	logfile
✔	8FK5	29248	2024-02-17	2022-12-20	3.4	2.99	3.40	3.5	0.005	0.72	1.0	0.06	15.60	0.00	2.052	3.66	0.12	3.0	97.0	0.0	0.37	0.72	0.76	2.57	3.5	0.003	0.64	0.0	0.05	14.39	0.00	2.148	5.63	2.95	3.6	96.4	0.0	0.28	0.66	0.77	0.83	2.72	16980	1970	37	0	112	0	0	logfile
✔	8FJS	29246	2024-02-18	2022-12-20	3.0	3.18	2.85	3.2	0.002	0.45	0.0	0.04	10.15	0.00	2.362	4.56	0.00	3.8	96.2	0.0	0.15	0.49	0.82	2.84	3.1	0.003	0.56	0.0	0.05	12.72	0.00	2.222	5.31	2.17	4.2	95.8	0.0	0.20	0.32	0.53	0.86	2.64	22550	3300	25	0	0	0	0	logfile
✔	8FK7	29249	2024-02-17	2022-12-20	4.3	4.38	4.11	4.2	0.003	0.56	0.0	0.05	11.64	0.00	2.156	10.45	0.00	0.7	99.3	0.0	2.48	0.56	0.82	—	4.2	0.004	0.61	0.0	0.05	12.21	0.00	2.140	11.57	0.09	0.6	99.4	0.0	2.35	0.55	0.57	0.83	—	19740	2720	20	0	0	0	0	logfile
✔	8HSY	35008	2024-02-19	2022-12-20	2.53	2.70	2.54	2.6	0.004	0.71	0.0	0.05	15.46	0.00	2.153	7.52	0.80	6.2	93.6	0.2	-0.75	0.83	0.86	3.64	2.6	0.004	0.61	0.0	0.05	16.34	0.00	2.149	5.44	1.99	7.4	92.4	0.2	-0.33	1.10	0.83	0.88	3.70	25320	3180	6	0	0	0	0	logfile
✔	8FJB	29221	2024-02-13	2022-12-19	3.06	3.49	3.03	3.4	0.006	0.68	0.0	0.05	13.23	0.01	2.135	3.71	0.00	2.7	97.2	0.1	-1.47	0.70	0.89	5.11	3.4	0.003	0.55	0.0	0.04	14.82	0.00	2.239	3.63	1.01	2.8	97.2	0.0	1.03	0.91	0.73	0.91	4.34	6330	802	5	0	0	0	0	logfile
✔	8HSJ	34999	2024-02-17	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.9	0.004	0.79	0.0	0.04	16.77	0.01	1.367	23.69	3.02	3.1	96.6	0.3	-0.48	1.67	0.85	0.73	0.51	17244	2166	12	0	18	0	0	logfile
✔	8HSG	34996	2024-02-19	2022-12-19	3.2	3.75	3.14	3.3	0.003	0.59	0.0	0.04	15.67	0.00	2.059	12.05	0.00	5.3	94.7	0.0	-0.30	0.85	0.83	1.70	3.4	0.003	0.59	0.0	0.04	17.03	0.00	2.044	11.83	1.77	5.7	94.3	0.0	0.01	1.12	0.86	0.85	1.83	24636	2923	9	76	2	0	0	logfile
✔	8HSC	34993	2024-02-14	2022-12-19	3.22	3.75	3.39	3.7	0.003	0.70	0.0	0.05	18.31	0.00	2.161	7.83	0.47	5.4	94.6	0.0	-1.27	0.63	0.82	1.68	3.7	0.003	0.59	0.0	0.04	18.41	0.00	2.077	11.32	5.32	5.9	94.1	0.0	-0.64	0.34	0.62	0.82	1.67	10180	1345	7	0	0	0	0	logfile
✔	8C0W	16373	2024-02-24	2022-12-19	4.7	4.86	4.66	4.7	0.004	0.89	0.0	0.05	14.89	0.01	1.748	6.29	0.00	9.8	90.2	0.0	-2.63	0.86	0.75	—	4.7	0.003	0.75	0.0	0.04	14.55	0.00	1.882	14.80	0.00	8.5	91.5	0.0	-1.73	1.45	0.88	0.79	—	43092	5555	13	0	31	0	0	logfile
✔	8HSi	34998	2024-02-13	2022-12-19	3.1	3.78	3.14	3.6	0.005	0.85	1.0	0.05	19.62	0.00	2.299	14.97	0.00	5.5	94.5	0.0	0.27	0.64	0.80	2.26	3.6	0.004	0.61	0.0	0.04	14.58	0.00	2.291	6.85	1.95	5.5	94.5	0.0	0.03	0.45	0.66	0.85	2.85	3516	405	5	0	10	0	0	logfile
✔	8FJA	29220	2024-02-13	2022-12-19	3.0	3.44	2.98	3.3	0.007	0.82	0.0	0.05	12.62	0.01	2.220	6.93	0.00	5.8	94.2	0.0	-2.60	0.71	0.89	4.79	3.3	0.003	0.55	0.0	0.04	15.32	0.00	2.244	5.34	1.14	3.4	96.6	0.0	0.08	0.38	0.71	0.89	4.17	6419	812	5	0	0	0	0	logfile

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