Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SQS	25392	2025-02-11	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.003	0.55	0.0	0.04	15.08	0.00	2.565	2.43	1.08	4.2	95.8	0.0	0.92	0.35	0.78	0.86	2.72	4376	560	5	0	0	0	0	logfile
✔	7VVo	32146	2025-02-12	2021-11-06	4.1	2.82	3.93	4.0	0.014	1.88	0.0	0.09	15.54	0.01	2.158	9.28	3.81	4.5	95.5	0.1	-1.84	0.70	0.74	—	3.9	0.004	0.71	0.0	0.04	14.01	0.00	2.490	12.79	0.00	4.0	96.0	0.0	-0.23	2.35	0.69	0.70	—	7942	1059	6	0	0	0	0	logfile
✔	7Q64	13851	2025-02-12	2021-11-05	2.76	2.81	2.66	2.9	0.014	1.34	0.0	0.09	10.20	0.01	2.276	7.23	3.83	8.3	91.7	0.0	-6.01	0.58	0.78	3.39	2.8	0.005	0.74	0.0	0.04	14.56	0.00	2.569	11.65	5.93	5.4	94.6	0.0	-5.73	0.74	0.59	0.86	3.85	7810	1100	30	0	0	0	0	logfile
✔	7SQG	25384	2025-02-11	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	17.27	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.003	0.58	0.0	0.04	17.03	0.00	2.545	7.17	1.74	3.0	97.0	0.0	1.52	0.96	0.81	0.82	3.42	6630	810	6	0	12	0	0	logfile
✔	7Q60	13848	2025-02-14	2021-11-05	3.13	3.73	—	3.4	0.007	1.26	1.0	0.07	15.64	0.01	2.271	5.00	0.57	5.2	94.8	0.1	-2.64	0.77	0.74	1.79	3.4	0.005	0.73	0.0	0.04	16.05	0.00	2.456	10.59	3.62	6.1	93.8	0.1	-1.18	0.44	0.78	0.76	1.93	9450	1212	1	0	0	0	0	logfile
✔	7Q66	13853	2025-02-11	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.006	0.80	0.0	0.05	16.31	0.00	2.448	12.40	11.26	0.8	99.2	0.0	-4.12	0.64	0.62	0.88	4.03	4807	682	22	0	0	0	0	logfile
✔	7Q65	13852	2025-02-11	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.004	0.69	0.0	0.03	13.30	0.00	2.566	11.62	10.00	8.4	91.6	0.0	-5.19	0.67	0.58	0.84	4.78	6204	880	22	0	0	0	0	logfile
✔	7Q61	13849	2025-02-14	2021-11-05	2.88	3.70	2.93	3.4	0.006	1.09	0.0	0.06	14.48	0.01	2.275	3.96	0.10	4.5	95.2	0.2	-1.84	0.82	0.81	3.62	3.4	0.006	0.80	0.0	0.05	15.22	0.00	2.385	11.13	2.86	4.7	95.1	0.2	-0.41	0.48	0.82	0.83	2.90	9535	1210	4	0	7	0	0	logfile
✔	7Q67	13854	2025-02-10	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.005	1.01	0.0	0.05	18.99	0.00	2.523	21.73	10.18	18.5	81.5	0.0	-5.05	2.51	0.44	0.69	0.92	2618	363	11	0	0	0	0	logfile
✔	7SQH	25385	2025-02-12	2021-11-05	2.5	2.77	—	3.0	0.006	0.74	0.0	0.05	19.41	0.00	2.257	3.85	0.00	2.4	97.6	0.0	1.93	0.85	0.83	3.23	3.0	0.004	0.64	0.0	0.05	17.02	0.00	2.520	5.01	1.66	3.3	96.7	0.0	1.78	0.62	0.87	0.87	3.26	6954	849	9	0	12	21	0	logfile
✔	7Q5Z	13847	2025-02-14	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.22	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.006	0.74	0.0	0.05	14.27	0.00	2.489	13.61	2.47	6.9	93.0	0.1	-0.92	1.18	0.82	0.74	1.30	10489	1344	1	0	0	0	0	logfile
✔	7SQF	25383	2025-02-11	2021-11-05	3.1	2.70	—	3.2	0.005	0.60	0.0	0.05	13.84	0.00	2.409	5.35	0.00	3.0	97.0	0.0	1.39	0.81	0.75	2.77	3.1	0.003	0.56	0.0	0.05	16.54	0.00	2.473	7.80	3.39	2.8	97.2	0.0	0.92	1.05	0.82	0.81	2.43	6630	819	6	0	12	0	0	logfile
✔	7VUZ	32132	2025-02-13	2021-11-04	2.89	3.37	—	3.3	0.010	1.40	3.0	0.08	13.54	0.01	2.035	6.79	1.39	5.3	94.7	0.0	-2.89	0.61	0.74	2.31	3.3	0.005	0.80	0.0	0.05	16.51	0.00	2.461	13.35	3.74	5.7	94.3	0.0	-0.28	1.32	0.58	0.74	1.46	8584	1097	6	0	1	0	0	logfile
✔	7VV5	32138	2025-02-13	2021-11-04	2.76	2.94	—	2.8	0.012	1.17	0.0	0.07	18.05	0.01	2.236	4.22	10.86	3.8	96.2	0.0	-2.82	0.77	0.86	3.43	2.8	0.003	0.65	0.0	0.04	17.67	0.00	2.434	7.64	3.24	1.9	98.1	0.0	1.20	1.19	0.74	0.86	3.17	8829	1122	6	0	2	0	0	logfile
✔	7VV4	32137	2025-02-10	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.73	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.73	0.0	0.05	17.14	0.00	2.585	9.91	3.33	2.3	97.4	0.4	2.23	0.62	0.59	0.77	0.88	2181	269	3	0	1	0	0	logfile
✔	7VV0	32133	2025-02-10	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.05	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.002	0.59	0.0	0.04	15.00	0.00	2.596	7.44	3.77	2.3	97.7	0.0	2.68	1.92	0.63	0.80	1.37	2175	268	3	0	1	0	0	logfile
✔	7VV6	32139	2025-02-10	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.05	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.5	0.003	0.61	0.0	0.04	16.88	0.00	2.588	5.11	2.49	2.2	97.8	0.0	3.02	1.25	0.64	0.86	2.36	2227	271	2	0	2	0	0	logfile
✔	7SQ0	25373	2025-02-13	2021-11-04	3.7	3.39	3.64	3.6	0.004	0.68	0.0	0.05	13.62	0.00	2.215	4.77	0.00	2.6	97.4	0.0	-2.87	0.72	0.83	3.99	3.6	0.002	0.57	0.0	0.05	14.76	0.00	1.944	4.87	0.20	2.6	97.4	0.0	1.38	1.90	0.72	0.83	3.49	9160	593	7	0	42	0	4286	logfile
✔	7SP6	25366	2025-02-12	2021-11-02	3.1	3.58	—	3.5	0.004	0.58	0.0	0.04	14.43	0.00	2.308	5.40	0.00	1.5	98.5	0.0	1.72	0.61	0.75	1.78	3.5	0.003	0.57	0.0	0.04	15.88	0.00	2.424	5.99	3.04	2.5	97.5	0.0	1.06	1.23	0.63	0.81	2.54	5957	733	5	0	3	0	0	logfile
✔	7VUH	32128	2025-02-13	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.68	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.003	0.63	0.0	0.04	15.88	0.00	2.529	12.04	2.44	6.2	93.8	0.0	-1.12	0.38	0.71	0.73	2.28	8302	1042	6	0	1	0	0	logfile

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