Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VUH	32128	2025-02-13	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.68	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.003	0.63	0.0	0.04	15.88	0.00	2.529	12.04	2.44	6.2	93.8	0.0	-1.12	0.38	0.71	0.73	2.28	8302	1042	6	0	1	0	0	logfile
✔	7SP7	25367	2025-02-12	2021-11-02	3.1	3.61	—	3.5	0.008	0.68	0.0	0.05	14.83	0.00	2.219	3.57	0.00	1.4	98.6	0.0	2.52	0.60	0.73	1.83	3.5	0.003	0.49	0.0	0.04	15.62	0.00	2.297	3.91	1.74	2.1	97.9	0.0	1.80	0.57	0.67	0.81	3.04	6052	739	4	1	4	0	0	logfile
✔	7SP6	25366	2025-02-12	2021-11-02	3.1	3.58	—	3.5	0.004	0.58	0.0	0.04	14.43	0.00	2.308	5.40	0.00	1.5	98.5	0.0	1.72	0.61	0.75	1.78	3.5	0.003	0.57	0.0	0.04	15.88	0.00	2.424	5.99	3.04	2.5	97.5	0.0	1.06	1.23	0.63	0.81	2.54	5957	733	5	0	3	0	0	logfile
✔	7SP8	25368	2025-02-12	2021-11-02	2.7	2.98	—	2.9	0.008	0.77	0.0	0.05	14.94	0.00	2.204	5.45	0.16	1.5	98.5	0.0	2.53	0.72	0.82	2.37	2.9	0.003	0.59	0.0	0.04	16.46	0.00	2.069	5.53	1.90	1.2	98.6	0.1	1.89	0.56	0.75	0.88	3.27	6090	742	4	0	5	0	0	logfile
✔	7VUi	32129	2025-02-13	2021-11-02	3.3	2.40	—	3.2	0.003	0.63	0.0	0.04	14.88	0.00	2.165	10.92	0.00	4.1	95.8	0.1	-0.34	0.73	0.71	1.24	2.2	0.003	0.64	0.0	0.04	16.82	0.00	2.287	9.28	3.24	3.8	96.0	0.2	0.15	0.41	0.75	0.76	1.81	8287	1034	7	0	3	0	0	logfile
✔	7SP9	25369	2025-02-12	2021-11-02	2.9	3.20	—	3.1	0.004	0.57	0.0	0.05	12.07	0.00	2.245	5.66	0.00	1.2	98.8	0.0	1.62	0.71	0.78	2.80	3.1	0.003	0.63	0.0	0.04	15.01	0.00	2.426	7.77	3.03	2.2	97.7	0.1	1.05	0.64	0.73	0.85	3.46	5966	737	4	0	2	0	0	logfile
✔	7VU8	32126	2025-02-10	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	16.69	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.003	0.67	0.0	0.04	19.67	0.01	2.574	5.65	3.97	3.6	96.4	0.0	-0.98	1.14	0.39	0.77	2.93	1433	170	2	0	1	0	0	logfile
✔	7Q4E	13804	2025-02-14	2021-10-30	3.63	3.95	3.60	3.8	0.008	0.99	0.0	0.06	19.12	0.01	1.857	5.12	0.00	2.5	97.5	0.0	-1.91	0.70	0.77	3.06	3.8	0.004	0.61	0.0	0.04	14.50	0.00	1.894	6.95	0.76	3.5	96.5	0.0	1.03	1.51	0.69	0.78	2.11	10049	608	9	0	29	0	4731	logfile
✔	7Q4C	13801	2025-02-14	2021-10-30	4.08	4.49	4.12	4.4	0.007	0.92	0.0	0.05	14.78	0.01	2.077	6.86	0.00	3.3	96.7	0.0	-1.44	0.71	0.75	—	4.4	0.003	0.60	0.0	0.04	14.17	0.00	2.400	5.92	0.00	2.2	97.8	0.0	1.82	0.91	0.69	0.74	—	9503	585	5	0	11	0	4598	logfile
✔	7SoF	25269	2025-02-11	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.31	1.0	0.08	11.42	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.005	0.70	0.0	0.05	12.84	0.00	2.393	4.48	3.82	3.0	97.0	0.0	-0.32	1.38	0.69	0.83	3.72	3735	488	5	0	9	0	0	logfile
✔	7SoC	25266	2025-02-11	2021-10-29	3.3	3.48	3.25	3.5	0.011	1.22	0.0	0.07	13.13	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	3.5	0.004	0.58	0.0	0.04	12.88	0.00	2.609	2.97	2.20	2.1	97.9	0.0	-0.01	0.50	0.68	0.90	3.61	3448	433	5	0	7	0	0	logfile
✔	7Q49	13799	2025-02-14	2021-10-29	3.72	4.35	3.97	4.2	0.008	1.08	0.0	0.06	19.17	0.01	1.995	6.54	0.19	2.9	97.1	0.0	-1.50	0.67	0.70	2.02	4.2	0.003	0.61	0.0	0.04	14.99	0.00	1.943	7.50	1.51	2.9	97.1	0.0	1.06	0.88	0.66	0.68	1.29	10124	616	8	0	26	1	4788	logfile
✔	7SoD	25267	2025-02-11	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.24	0.0	0.08	9.17	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.003	0.56	0.0	0.04	12.54	0.00	2.564	2.27	0.25	3.5	96.5	0.0	0.92	1.27	0.68	0.90	5.46	3830	473	5	0	7	0	0	logfile
✔	7Q3U	13795	2025-02-10	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.005	0.93	0.0	0.06	18.94	0.00	2.499	19.13	3.81	13.9	86.1	0.0	-6.07	2.25	0.35	0.61	3.36	2355	355	5	0	0	0	0	logfile
✔	7VT0	32117	2025-02-14	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.5	0.003	0.76	0.0	0.05	15.91	0.00	2.476	7.50	1.74	13.0	86.2	0.8	-3.05	1.61	0.69	0.78	2.84	10536	1326	2	0	0	0	0	logfile
✔	7SN2	25209	2025-02-14	2021-10-27	4.3	3.73	—	3.7	0.007	1.31	1.0	0.07	17.66	0.01	1.905	8.33	0.00	0.8	98.9	0.3	-1.92	0.54	0.70	—	3.7	0.003	0.71	0.0	0.05	13.80	0.01	2.345	9.02	0.00	7.0	93.0	0.0	-1.39	0.54	0.54	0.70	—	10092	650	5	0	10	0	4904	logfile
✔	7Q2Z	13786	2025-02-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.55	0.0	0.03	19.95	0.00	2.375	2.84	1.09	2.5	97.4	0.1	2.17	1.21	0.70	0.86	2.00	8258	902	4	46	0	0	0	logfile
✔	7SLP	25197	2025-02-11	2021-10-24	4.1	4.19	—	4.2	0.008	1.22	1.0	0.07	19.40	0.01	2.221	7.09	1.77	4.2	95.3	0.5	-3.76	0.62	0.56	—	4.1	0.003	0.69	0.0	0.04	17.92	0.01	2.501	10.63	0.00	4.0	96.0	0.0	0.11	1.42	0.71	0.71	—	5176	561	4	37	0	0	0	logfile
✔	7SLQ	25198	2025-02-11	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	19.87	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.002	0.57	0.0	0.04	19.14	0.01	2.486	4.97	2.02	3.8	96.2	0.0	0.20	1.69	0.75	0.72	1.77	5451	559	4	50	1	0	0	logfile
✔	7SL8	25194	2025-02-11	2021-10-23	3.4	3.98	—	3.9	0.005	0.97	0.0	0.06	14.66	0.01	2.316	8.99	0.92	8.1	91.9	0.0	-4.09	0.62	0.80	1.65	3.9	0.004	0.72	0.0	0.04	16.09	0.00	2.510	10.98	4.99	6.6	93.4	0.0	0.37	0.52	0.61	0.80	1.14	5295	700	3	0	1	0	0	logfile

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