Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SL8	25194	2025-02-11	2021-10-23	3.4	3.98	—	3.9	0.005	0.97	0.0	0.06	14.66	0.01	2.316	8.99	0.92	8.1	91.9	0.0	-4.09	0.62	0.80	1.65	3.9	0.004	0.72	0.0	0.04	16.09	0.00	2.510	10.98	4.99	6.6	93.4	0.0	0.37	0.52	0.61	0.80	1.14	5295	700	3	0	1	0	0	logfile
✔	7VQX	32095	2025-02-13	2021-10-21	2.74	2.89	—	2.9	0.004	0.55	0.0	0.04	14.12	0.00	2.094	8.36	0.00	3.6	96.4	0.0	0.32	0.63	0.79	3.28	2.9	0.002	0.51	0.0	0.04	16.25	0.00	2.492	5.35	1.73	2.8	97.2	0.0	1.17	0.31	0.60	0.80	2.53	9049	1148	6	0	0	0	0	logfile
✔	7VR1	32096	2025-02-13	2021-10-21	3.4	3.67	—	3.6	0.003	0.55	0.0	0.04	13.99	0.00	2.253	7.05	0.00	5.8	94.2	0.0	-0.76	0.68	0.84	1.98	3.6	0.002	0.60	0.0	0.04	15.57	0.00	2.540	5.06	1.19	5.3	94.7	0.0	0.80	0.35	0.68	0.85	1.39	9522	1196	2	0	0	0	0	logfile
✔	7VQQ	32092	2025-02-10	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.003	0.70	0.0	0.04	12.32	0.00	2.573	1.11	2.74	3.4	96.6	0.0	-4.91	0.29	0.47	0.87	4.65	1968	273	3	0	0	0	0	logfile
✔	7SK2	25170	2025-02-11	2021-10-19	3.82	4.03	—	3.9	0.005	1.06	0.0	0.06	13.67	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.83	0.0	0.04	16.11	0.00	2.607	16.79	3.99	5.1	94.9	0.0	-0.63	0.96	0.50	0.69	0.64	4177	532	2	0	1	0	0	logfile
✔	7SK0	25168	2025-02-11	2021-10-19	3.33	3.63	2.74	3.6	0.009	1.04	0.0	0.06	14.22	0.01	2.005	3.11	0.44	4.3	95.7	0.0	0.35	0.47	0.66	1.21	3.6	0.004	0.75	0.0	0.04	16.20	0.00	2.468	12.07	0.66	2.9	97.1	0.0	2.30	0.57	0.47	0.68	2.10	4168	514	4	0	7	0	0	logfile
✔	7SK1	25169	2025-02-11	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	3.9	0.006	1.58	2.0	0.05	16.44	0.01	2.183	8.93	3.91	4.8	95.0	0.2	1.66	0.58	0.58	0.73	1.43	4291	524	4	0	7	0	0	logfile
✔	7VQ5	32086	2025-02-11	2021-10-19	3.1	3.31	—	3.3	0.009	0.77	0.0	0.05	14.85	0.00	2.110	7.38	0.14	7.4	92.6	0.0	-3.56	0.66	0.84	2.48	3.4	0.003	0.53	0.0	0.04	16.09	0.00	2.532	6.83	1.72	3.4	96.6	0.0	2.55	1.11	0.63	0.83	1.62	6315	800	3	0	1	0	0	logfile
✔	7VQ4	32085	2025-02-11	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.67	0.0	0.04	17.38	0.00	2.607	6.53	5.03	3.4	96.6	0.0	3.11	1.26	0.58	0.78	0.07	6306	800	2	0	0	0	0	logfile
✔	7VQ3	32084	2025-02-11	2021-10-19	3.2	3.40	—	3.4	0.005	0.55	0.0	0.04	14.66	0.00	2.061	5.90	0.00	6.6	93.4	0.0	-0.93	0.65	0.83	2.45	3.4	0.003	0.57	0.0	0.04	16.69	0.00	2.556	5.03	2.44	4.3	95.7	0.0	2.99	0.51	0.64	0.84	1.77	6306	800	2	0	0	0	0	logfile
✔	7VQ7	32087	2025-02-11	2021-10-19	3.6	3.68	—	3.7	0.007	0.75	0.0	0.04	16.81	0.00	2.070	11.39	4.87	3.9	96.1	0.0	-1.30	0.61	0.81	2.00	3.7	0.003	0.55	0.0	0.04	18.12	0.00	2.217	6.95	2.21	2.1	97.9	0.0	3.79	1.28	0.58	0.79	1.15	6127	778	3	0	1	0	0	logfile
✔	7SK6	25174	2025-02-13	2021-10-19	4.0	4.42	—	4.1	0.018	1.92	2.0	0.11	13.16	0.01	2.462	0.11	0.76	4.2	94.0	1.8	0.35	0.52	0.52	—	4.1	0.003	0.57	0.0	0.04	14.84	0.00	2.266	9.74	1.14	3.7	96.3	0.0	0.89	1.44	0.64	0.70	—	9144	585	4	0	0	0	4462	logfile
✔	7SJ0	25149	2025-02-11	2021-10-15	3.36	3.33	3.46	3.7	0.003	0.66	0.0	0.05	12.81	0.00	2.225	4.12	0.00	5.9	94.1	0.0	-1.98	0.69	0.79	3.48	3.7	0.004	0.82	0.0	0.05	15.73	0.01	2.294	5.40	2.83	6.2	93.8	0.0	-1.53	0.49	0.70	0.81	3.11	3590	452	4	0	5	0	0	logfile
✔	7SJ1	25152	2025-02-11	2021-10-15	2.9	3.13	—	3.3	0.011	1.01	0.0	0.04	16.62	0.00	2.351	8.63	0.61	2.1	97.9	0.0	2.80	0.58	0.77	3.41	3.3	0.003	0.61	0.0	0.04	16.29	0.01	2.605	10.21	1.06	0.5	99.5	0.0	3.26	1.09	0.50	0.79	2.10	6463	784	9	0	34	1	0	logfile
✔	7SJ4	25153	2025-02-11	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.47	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.60	0.0	0.04	14.87	0.00	2.491	5.66	3.02	1.7	98.3	0.0	1.47	0.62	0.60	0.71	2.49	3909	481	4	0	0	24	0	logfile
✔	7SiP	25147	2025-02-12	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	17.47	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.52	0.0	0.04	15.62	0.00	2.597	2.65	3.21	1.4	98.6	0.0	1.62	0.99	0.58	0.82	2.58	7560	892	12	0	36	20	0	logfile
✔	7VoJ	32050	2025-02-11	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.003	0.63	0.0	0.04	16.28	0.00	1.875	5.18	3.17	1.9	98.1	0.0	3.13	1.22	0.61	0.82	1.90	6318	800	4	0	6	0	0	logfile
✔	7Vo9	32049	2025-02-11	2021-10-13	3.8	3.98	3.82	3.8	0.011	1.58	1.0	0.09	23.20	0.00	2.124	6.40	0.76	0.8	99.2	0.0	2.89	0.75	0.63	0.88	3.9	0.005	0.79	0.0	0.04	27.01	0.00	1.864	16.44	4.80	1.0	99.0	0.0	0.67	1.12	0.78	0.68	0.48	5711	524	10	86	12	0	0	logfile
✔	7Vo0	32048	2025-02-12	2021-10-12	3.4	3.66	3.41	3.5	0.004	0.57	0.0	0.04	21.17	0.00	1.938	7.44	0.17	1.8	98.2	0.0	0.39	0.73	0.66	1.10	3.6	0.003	0.56	0.0	0.04	22.80	0.00	1.940	8.14	2.89	2.6	97.4	0.0	1.29	1.37	0.83	0.83	1.24	7661	786	14	86	18	0	0	logfile
✔	7SHS	25135	2025-02-12	2021-10-11	4.1	3.40	—	4.3	0.003	0.74	0.0	0.04	13.65	0.01	2.349	5.95	0.00	1.8	98.2	0.0	0.74	0.60	0.71	—	4.1	0.002	0.59	0.0	0.04	14.36	0.00	2.430	10.26	0.00	2.0	98.0	0.0	2.09	1.87	0.61	0.74	—	6873	849	3	0	0	0	0	logfile

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