Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SHM	25130	2025-02-13	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.73	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.005	0.73	0.0	0.04	17.04	0.00	2.530	8.07	3.43	3.9	96.1	0.0	0.03	0.59	0.62	0.85	2.69	9186	1142	4	0	2	0	0	logfile
✔	7SHL	25128	2025-02-13	2021-10-09	3.5	3.40	—	2.9	0.003	0.65	0.0	0.04	14.14	0.00	2.087	15.79	0.00	3.9	96.1	0.0	0.05	0.83	0.78	1.51	2.9	0.003	0.71	0.0	0.04	16.51	0.00	2.451	12.53	1.34	3.1	96.9	0.0	0.43	0.94	0.83	0.78	1.33	9207	1138	6	0	1	0	0	logfile
✔	7SHK	25127	2025-02-14	2021-10-09	3.1	3.83	—	3.7	0.005	0.82	4.0	0.05	14.18	0.01	2.199	12.41	0.25	4.0	96.0	0.0	-0.23	0.82	0.76	1.56	3.7	0.003	0.71	0.0	0.04	15.91	0.00	2.348	10.69	1.70	3.6	96.4	0.0	0.20	0.54	0.81	0.78	1.56	10485	1299	7	0	4	0	0	logfile
✔	7PY2	13708	2025-02-10	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.003	0.79	0.0	0.04	18.08	0.00	2.516	2.93	5.50	5.2	94.8	0.0	-3.91	1.39	0.49	0.87	6.12	2152	316	4	0	0	0	0	logfile
✔	7VLR	32024	2025-02-13	2021-10-05	3.4	3.65	3.41	3.6	0.004	0.61	0.0	0.04	12.84	0.00	2.052	4.29	0.94	1.6	98.4	0.0	1.47	0.70	0.84	1.66	3.6	0.003	0.55	0.0	0.04	15.45	0.00	2.110	6.77	2.19	1.2	98.8	0.0	2.97	1.52	0.65	0.84	1.15	9003	1145	2	0	5	0	0	logfile
✔	7SGD	25107	2025-02-13	2021-10-05	3.97	4.40	3.79	4.1	0.024	1.80	3.0	0.17	14.41	0.01	2.477	1.47	0.00	1.8	98.2	0.0	0.20	0.84	0.81	2.57	4.1	0.005	0.94	0.0	0.05	15.11	0.00	2.417	14.49	3.95	4.4	95.5	0.1	0.57	1.50	0.85	0.83	2.08	9120	1014	39	0	75	0	0	logfile
✔	7VLT	32026	2025-02-14	2021-10-05	3.1	3.37	3.11	3.4	0.004	0.60	0.0	0.04	13.02	0.00	1.963	3.24	2.19	1.9	98.1	0.0	0.12	0.67	0.83	2.64	3.4	0.003	0.54	0.0	0.04	15.47	0.00	1.973	5.77	2.82	1.0	99.0	0.0	2.62	1.85	0.66	0.83	2.15	9024	1145	2	0	6	0	0	logfile
✔	7VLS	32025	2025-02-14	2021-10-05	3.3	3.54	3.30	3.5	0.004	0.62	0.0	0.04	13.16	0.00	1.926	2.53	1.46	2.6	97.4	0.0	-0.24	0.69	0.84	2.33	3.5	0.003	0.56	0.0	0.04	15.85	0.00	1.978	5.29	2.19	1.5	98.5	0.0	2.70	1.48	0.63	0.81	1.58	9003	1141	2	0	6	0	0	logfile
✔	7VLU	32027	2025-02-14	2021-10-05	3.3	3.71	3.36	3.6	0.004	0.63	0.0	0.04	13.04	0.00	1.978	3.76	1.96	2.5	97.5	0.0	-0.35	0.71	0.84	2.31	3.6	0.003	0.56	0.0	0.04	14.58	0.00	1.935	6.37	2.27	1.4	98.6	0.0	2.64	1.91	0.63	0.81	1.50	9110	1159	2	0	6	0	0	logfile
✔	7SFJ	25079	2025-02-12	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.49	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.004	0.55	0.0	0.04	17.65	0.00	2.629	4.75	1.85	3.2	96.8	0.0	2.86	0.47	0.58	0.78	3.21	7377	852	9	0	24	3	0	logfile
✔	7SFK	25091	2025-02-12	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.40	0.01	2.265	3.61	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.003	0.50	0.0	0.04	17.28	0.00	2.496	5.04	1.85	2.8	97.2	0.0	2.78	0.38	0.68	0.84	4.11	7419	852	9	0	24	57	0	logfile
✔	7SF7	25076	2025-02-11	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.2	0.004	0.64	0.0	0.04	15.74	0.00	2.517	4.93	2.40	7.9	92.1	0.0	-0.91	0.49	0.77	0.79	1.69	6776	879	5	0	0	3	0	logfile
✔	7SF8	25077	2025-02-11	2021-10-03	2.7	2.25	—	2.1	0.005	0.74	0.0	0.05	13.03	0.00	2.270	4.24	0.14	4.7	95.3	0.0	0.40	0.80	0.80	3.25	2.1	0.003	0.57	0.0	0.04	15.78	0.00	2.584	3.26	1.67	5.0	95.0	0.0	1.31	1.00	0.81	0.83	3.31	6661	860	4	0	0	0	0	logfile
✔	7PVD	13667	2025-02-13	2021-10-02	3.7	3.80	2.77	3.7	0.007	0.83	0.0	0.05	18.68	0.00	2.134	13.11	0.32	3.9	96.1	0.0	-1.16	0.69	0.67	1.54	3.7	0.003	0.73	0.0	0.04	16.02	0.00	2.353	12.53	2.36	4.0	96.0	0.0	-0.04	0.84	0.72	0.72	1.21	8902	1035	22	0	43	0	0	logfile
✔	7VL8	32020	2025-02-13	2021-10-02	2.9	3.53	—	3.5	0.008	0.93	0.0	0.07	12.53	0.00	2.289	5.92	0.00	3.2	96.8	0.0	-1.45	0.56	0.71	1.61	3.5	0.003	0.60	0.0	0.04	15.27	0.00	2.495	5.75	2.66	2.2	97.8	0.0	0.65	1.58	0.47	0.64	1.67	8834	1132	6	0	1	0	0	logfile
✔	7VLA	32022	2025-02-14	2021-10-02	2.7	2.79	—	2.8	0.006	0.87	0.0	0.06	12.46	0.01	1.634	9.80	0.09	2.4	97.6	0.0	1.07	0.67	0.79	3.93	2.8	0.004	0.63	0.0	0.04	15.37	0.00	2.567	5.29	1.04	2.9	97.1	0.0	1.30	0.47	0.71	0.85	3.12	9675	1222	7	0	1	0	0	logfile
✔	7VL9	32021	2025-02-14	2021-10-02	2.6	2.71	—	2.8	0.007	0.96	2.0	0.06	13.15	0.01	2.176	8.25	0.10	2.9	97.1	0.0	0.32	0.68	0.79	4.33	2.7	0.003	0.58	0.0	0.04	15.96	0.00	2.550	5.12	2.19	2.8	97.2	0.0	1.25	1.19	0.69	0.82	3.59	9605	1214	7	0	1	0	0	logfile
✔	7PUY	13662	2025-02-14	2021-10-01	3.3	3.42	2.55	3.3	0.006	0.74	0.0	0.05	17.93	0.00	2.067	13.87	1.90	3.0	97.0	0.0	-0.75	0.70	0.68	1.46	3.3	0.004	0.77	0.0	0.04	15.36	0.00	2.354	13.72	2.26	3.7	96.3	0.0	-0.24	0.70	0.73	0.74	1.63	10395	1224	24	0	42	0	0	logfile
✔	7SEP	25074	2025-02-12	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.6	0.003	0.68	0.0	0.05	16.81	0.00	2.464	10.62	5.96	2.9	97.1	0.0	-0.02	0.86	0.72	0.71	1.77	7641	930	2	0	0	0	0	logfile
✔	7VKU	32019	2025-02-13	2021-10-01	3.2	3.40	—	3.3	0.013	1.24	5.0	0.08	16.10	0.01	1.611	10.48	2.23	10.1	89.2	0.7	-5.75	0.76	0.83	2.96	3.3	0.003	0.71	0.0	0.04	16.88	0.00	2.515	6.46	2.81	9.0	90.8	0.2	-1.49	0.54	0.73	0.86	2.62	9219	1154	4	0	0	0	0	logfile

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