Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SDE	23517	2025-02-11	2021-09-29	3.2	3.37	—	3.3	0.004	0.92	1.0	0.06	17.03	0.00	2.201	25.84	8.60	10.6	89.1	0.3	-4.65	0.74	0.77	2.50	3.3	0.002	0.67	0.0	0.04	17.28	0.00	2.190	7.50	3.31	6.1	93.9	0.0	-0.22	1.20	0.74	0.79	2.26	5734	726	2	0	0	0	0	logfile
✔	7PU7	13654	2025-02-13	2021-09-28	2.9	2.65	—	3.1	0.008	1.34	2.0	0.11	16.90	0.01	2.280	4.23	1.28	3.1	96.9	0.0	-1.39	0.83	0.85	3.37	3.1	0.004	0.64	0.0	0.04	17.89	0.00	2.474	3.66	2.09	3.5	96.5	0.0	0.19	1.35	0.83	0.84	3.37	8990	1070	4	33	4	3	0	logfile
✔	7SCG	25034	2025-02-13	2021-09-28	3.0	3.41	—	3.3	0.005	0.61	0.0	0.04	12.87	0.00	2.274	9.34	0.00	4.4	95.6	0.0	-0.30	0.75	0.88	4.53	3.3	0.002	0.56	0.0	0.04	15.13	0.00	2.529	3.69	2.03	3.0	97.0	0.0	0.93	0.33	0.72	0.89	3.42	8539	1121	6	0	1	2	0	logfile
✔	7SCK	25037	2025-02-14	2021-09-28	2.8	2.26	2.83	2.1	0.005	0.61	0.0	0.05	13.39	0.00	1.744	9.55	0.36	5.5	94.5	0.0	-0.14	0.75	0.73	3.35	1.8	0.004	0.71	0.0	0.05	15.49	0.00	2.139	12.07	2.07	4.7	95.2	0.1	-0.58	0.56	0.77	0.77	2.82	10250	1240	8	2	9	0	0	logfile
✔	7SCH	25035	2025-02-14	2021-09-28	3.1	2.24	3.07	2.0	0.003	0.62	0.0	0.05	12.80	0.00	2.218	9.09	0.19	4.1	95.9	0.0	0.02	0.78	0.75	3.40	2.0	0.003	0.60	0.0	0.04	15.17	0.00	2.462	8.62	2.16	4.8	95.2	0.0	0.43	0.38	0.78	0.80	3.05	9711	1190	3	0	3	0	0	logfile
✔	7PTV	13641	2025-02-14	2021-09-27	3.3	3.13	2.96	3.1	0.008	0.80	0.0	0.05	14.24	0.01	2.259	8.31	2.05	8.4	91.6	0.0	-1.53	0.86	0.86	3.61	3.1	0.003	0.62	0.0	0.05	14.78	0.00	2.410	5.93	2.51	5.8	94.2	0.0	-0.67	1.15	0.87	0.89	3.08	9996	1290	4	0	2	0	0	logfile
✔	7PTX	13642	2025-02-12	2021-09-27	4.03	4.17	—	3.9	0.003	0.76	0.0	0.05	14.08	0.01	2.202	19.18	0.00	10.6	89.4	0.0	-1.97	0.84	0.72	—	4.0	0.003	0.77	0.0	0.05	14.41	0.00	2.403	14.50	0.00	9.0	91.0	0.0	-1.23	1.06	0.85	0.73	—	7653	1000	1	0	0	0	0	logfile
✔	7ViG	32008	2025-02-13	2021-09-26	2.89	3.12	—	3.1	0.006	0.71	0.0	0.05	13.09	0.00	2.203	7.92	0.00	2.8	97.2	0.0	0.90	0.70	0.87	4.29	3.1	0.003	0.55	0.0	0.04	15.55	0.00	2.439	6.18	2.15	2.3	97.7	0.0	1.30	0.37	0.63	0.86	3.56	8920	1133	6	0	1	0	0	logfile
✔	7ViH	32009	2025-02-13	2021-09-26	2.98	3.27	—	3.2	0.006	0.80	2.0	0.16	14.00	0.01	2.205	10.49	0.61	2.8	97.1	0.1	0.70	0.63	0.83	3.87	3.2	0.003	0.56	0.0	0.04	15.76	0.00	2.469	6.50	2.56	2.6	97.4	0.0	1.08	1.90	0.60	0.83	3.40	8938	1136	6	0	1	0	0	logfile
✔	7SBF	24978	2025-02-13	2021-09-24	2.9	3.28	—	3.2	0.005	0.65	0.0	0.05	12.82	0.00	2.200	7.87	0.23	3.8	96.1	0.1	-0.02	0.75	0.82	3.04	3.2	0.004	0.64	0.0	0.04	15.93	0.00	2.491	8.29	3.06	3.6	96.4	0.0	0.43	0.41	0.75	0.84	3.21	8525	1119	6	0	1	0	0	logfile
✔	7PSM	13614	2025-02-14	2021-09-23	3.4	3.99	—	3.9	0.008	1.04	0.0	0.05	17.19	0.01	2.078	3.51	0.00	3.7	96.3	0.0	-3.29	0.63	0.80	1.18	3.9	0.003	0.58	0.0	0.04	16.71	0.00	1.871	7.13	2.69	2.5	97.5	0.0	1.60	0.91	0.61	0.79	1.12	9394	1170	4	0	6	0	0	logfile
✔	7SAU	24957	2025-02-11	2021-09-23	3.0	2.41	2.77	2.7	0.005	0.61	0.0	0.04	13.77	0.01	2.122	6.13	0.15	5.1	94.9	0.0	0.64	0.61	0.84	3.01	2.7	0.003	0.56	0.0	0.04	17.18	0.00	2.564	5.19	1.82	4.5	95.5	0.0	2.29	0.45	0.60	0.85	2.64	6317	791	7	0	0	0	0	logfile
✔	7SAQ	24953	2025-02-11	2021-09-23	2.9	2.87	—	3.1	0.006	0.84	0.0	0.07	14.71	0.02	2.029	11.87	0.00	12.8	87.2	0.0	-3.19	0.57	0.76	4.42	3.1	0.005	0.80	0.0	0.07	15.84	0.00	2.617	7.82	4.29	8.0	92.0	0.0	-3.29	0.50	0.50	0.81	4.75	5710	675	10	0	20	0	0	logfile
✔	7SAX	24958	2025-02-11	2021-09-23	3.0	2.60	2.97	3.0	0.007	0.66	0.0	0.04	13.54	0.00	2.174	5.46	0.00	3.3	96.7	0.0	1.22	0.58	0.85	2.70	2.9	0.002	0.51	0.0	0.04	17.33	0.00	2.473	5.27	2.33	2.4	97.6	0.0	3.06	0.50	0.59	0.86	1.72	5305	689	7	0	0	0	0	logfile
✔	7PSN	13615	2025-02-14	2021-09-23	2.9	3.55	—	3.5	0.009	0.82	0.0	0.04	15.99	0.01	1.923	4.83	0.00	2.7	97.3	0.0	-3.01	0.59	0.78	3.43	3.5	0.003	0.56	0.0	0.04	15.95	0.00	2.027	5.79	1.70	2.0	98.0	0.0	1.67	0.51	0.57	0.78	2.33	9464	1170	4	0	8	0	0	logfile
✔	7SAT	24956	2025-02-12	2021-09-23	3.9	3.85	3.80	3.8	0.004	0.76	0.0	0.04	14.44	0.00	2.080	15.57	0.28	7.4	92.6	0.0	0.06	0.61	0.77	1.82	3.8	0.004	0.87	0.0	0.04	17.20	0.00	2.386	14.67	3.10	5.9	94.1	0.0	0.43	0.59	0.62	0.77	1.43	6581	822	7	0	0	0	0	logfile
✔	7SAZ	24959	2025-02-11	2021-09-23	3.0	3.13	2.81	3.1	0.004	0.63	0.0	0.04	13.70	0.00	2.188	9.47	0.00	3.7	96.2	0.1	0.22	0.63	0.85	2.55	3.1	0.004	0.60	0.0	0.04	17.15	0.00	2.616	6.93	2.04	3.4	96.6	0.0	1.63	0.43	0.62	0.86	2.07	5708	722	7	0	0	0	0	logfile
✔	7SB2	24961	2025-02-11	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.65	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.005	0.78	0.0	0.04	16.64	0.00	2.385	15.91	2.18	5.4	94.6	0.0	0.63	0.45	0.83	0.86	0.94	4715	598	2	0	0	0	0	logfile
✔	7PSL	13613	2025-02-14	2021-09-23	3.3	3.77	—	3.7	0.006	0.65	0.0	0.04	15.10	0.00	2.258	5.27	0.00	3.9	96.1	0.0	-3.04	0.61	0.76	2.57	3.7	0.003	0.60	0.0	0.04	16.40	0.00	2.493	7.33	1.07	2.2	97.8	0.0	1.64	1.29	0.57	0.74	1.68	9612	1200	4	0	4	0	0	logfile
✔	7SAM	24952	2025-02-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.87	0.0	0.04	28.10	0.01	1.833	65.98	0.00	0.0	0.0	0.0	—	5.47	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile

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