Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SAM	24952	2025-02-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.87	0.0	0.04	28.10	0.01	1.833	65.98	0.00	0.0	0.0	0.0	—	5.47	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	7PSD	13612	2025-02-13	2021-09-22	3.0	3.33	2.96	3.2	0.015	1.12	0.0	0.07	14.39	0.01	2.146	7.65	0.00	5.5	94.5	0.0	-1.38	0.70	0.87	2.60	3.2	0.004	0.65	0.0	0.04	16.01	0.00	2.422	8.15	1.56	2.8	97.2	0.0	1.62	0.41	0.63	0.86	2.54	9032	1160	2	0	0	0	0	logfile
✔	7PQG	13593	2025-02-10	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.1	0.005	1.21	1.0	0.06	15.56	0.01	2.435	30.48	2.52	6.7	93.3	0.0	-1.24	1.24	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	7PQX	13606	2025-02-13	2021-09-20	3.08	3.48	—	3.4	0.010	1.11	0.0	0.06	14.20	0.01	2.296	4.37	0.00	4.3	95.7	0.0	-2.13	0.69	0.85	2.92	3.4	0.005	0.67	0.0	0.04	15.69	0.00	2.537	8.09	2.29	3.1	96.9	0.0	1.23	0.93	0.63	0.84	2.69	9032	1160	2	0	0	0	0	logfile
✔	7VGY	31980	2025-02-14	2021-09-20	3.1	3.36	—	3.2	0.005	0.66	0.0	0.05	14.18	0.00	2.194	10.78	0.43	6.7	93.3	0.0	-0.74	0.73	0.81	2.58	3.2	0.003	0.60	0.0	0.04	16.05	0.00	2.502	7.20	3.85	5.4	94.6	0.0	-0.20	0.91	0.73	0.84	2.43	8748	1121	6	0	2	0	0	logfile
✔	7PR1	13607	2025-02-13	2021-09-20	2.81	3.22	2.90	3.1	0.007	0.95	0.0	0.05	14.35	0.00	2.053	7.90	0.00	2.1	97.9	0.0	-0.18	0.63	0.83	3.36	3.1	0.004	0.61	0.0	0.04	16.70	0.00	2.195	8.87	1.85	1.8	98.2	0.0	1.82	0.94	0.58	0.81	2.71	9222	1174	4	0	4	0	0	logfile
✔	7PQT	13604	2025-02-14	2021-09-20	2.65	2.14	—	2.9	0.011	0.87	0.0	0.05	18.50	0.01	2.130	13.52	10.42	6.9	92.4	0.7	-3.82	0.76	0.71	4.07	2.9	0.005	0.79	0.0	0.05	18.22	0.01	2.474	8.90	4.35	4.7	95.0	0.3	-0.10	0.36	0.82	0.85	3.89	10464	1272	10	0	4	8	0	logfile
✔	7S9D	24933	2025-02-14	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.003	0.65	0.0	0.04	12.08	0.00	2.603	8.75	0.00	7.7	92.0	0.3	-0.65	0.43	0.60	0.78	—	10462	1354	2	0	0	0	0	logfile
✔	7S9B	24931	2025-02-14	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.003	0.65	0.0	0.04	11.97	0.00	2.580	10.46	0.00	6.7	93.2	0.1	0.52	0.41	0.60	0.80	—	10458	1356	2	0	0	0	0	logfile
✔	7S9A	24930	2025-02-14	2021-09-20	3.8	3.50	—	3.6	0.003	0.60	0.0	0.04	12.63	0.01	2.290	6.24	0.00	6.6	93.1	0.3	1.38	0.62	0.82	2.00	3.6	0.003	0.57	0.0	0.04	14.21	0.00	2.555	5.16	1.93	5.8	93.9	0.3	1.94	0.32	0.62	0.82	1.42	10420	1350	4	0	2	0	0	logfile
✔	7S8X	24928	2025-02-14	2021-09-20	3.3	3.00	—	3.3	0.005	0.73	0.0	0.05	14.05	0.00	2.237	11.81	0.00	6.6	93.3	0.1	0.01	0.64	0.83	2.58	3.3	0.003	0.58	0.0	0.04	15.80	0.00	2.495	9.07	2.71	5.3	94.7	0.0	1.14	1.16	0.66	0.85	2.18	10426	1350	2	0	0	0	0	logfile
✔	7S9E	24934	2025-02-14	2021-09-20	3.7	3.21	—	3.6	0.004	0.72	0.0	0.05	13.53	0.00	2.202	11.48	0.00	7.1	92.9	0.0	-0.36	0.60	0.81	2.60	3.6	0.003	0.64	0.0	0.04	15.54	0.00	2.433	9.46	2.61	6.2	93.8	0.0	0.82	1.18	0.62	0.82	2.51	10476	1354	4	0	2	0	0	logfile
✔	7S8U	24922	2025-02-11	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.003	0.83	0.0	0.05	16.77	0.00	2.535	14.25	4.56	8.6	91.3	0.2	-0.39	1.35	0.50	0.61	0.59	5210	667	1	0	0	0	0	logfile
✔	7S8L	24896	2025-02-12	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.7	0.002	0.56	0.0	0.04	15.35	0.00	2.482	2.26	2.92	3.1	96.9	0.0	1.54	0.33	0.84	0.83	3.81	8177	1096	6	0	0	0	0	logfile
✔	7S8N	24898	2025-02-12	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.07	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.1	0.005	0.65	0.0	0.04	15.78	0.00	2.476	2.90	2.08	3.9	96.1	0.0	1.18	1.00	0.82	0.82	2.74	8154	1090	6	0	1	0	0	logfile
✔	7S8M	24897	2025-02-12	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.57	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.57	0.0	0.04	14.87	0.00	2.508	5.66	2.17	3.9	96.1	0.0	1.17	0.31	0.81	0.83	3.76	8346	1102	6	0	0	0	0	logfile
✔	7PQQ	13596	2025-02-10	2021-09-18	3.3	3.44	—	3.5	0.004	0.69	0.0	0.04	14.02	0.00	2.244	12.20	0.00	4.6	95.4	0.0	-2.50	0.44	0.73	3.02	3.5	0.003	0.68	0.0	0.04	16.08	0.00	2.545	7.78	3.12	3.4	96.6	0.0	-1.43	0.49	0.44	0.75	2.02	3207	417	2	0	0	0	0	logfile
✔	7S8P	24900	2025-02-12	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.74	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.64	0.0	0.04	15.36	0.00	2.487	1.91	3.73	5.1	94.9	0.0	0.31	0.36	0.84	0.84	3.97	8093	1089	6	0	1	0	0	logfile
✔	7S8o	24899	2025-02-12	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.52	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.003	0.59	0.0	0.04	15.82	0.00	2.541	2.63	2.19	4.7	95.3	0.0	1.16	0.39	0.83	0.84	3.16	8331	1101	6	0	1	0	0	logfile
✔	7PQE	13591	2025-02-14	2021-09-17	3.7	3.72	—	3.6	0.006	0.68	0.0	0.04	13.13	0.00	2.107	12.33	0.09	5.6	94.4	0.0	-1.09	0.81	0.82	2.85	3.7	0.004	0.60	0.0	0.04	15.27	0.00	2.326	8.31	2.02	4.1	95.9	0.0	0.66	0.54	0.80	0.81	2.38	10746	1365	5	0	2	0	0	logfile

• ← previous
• Page 178 of 243
• next →