Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q8C	18250	2025-02-11	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.54	0.0	0.05	16.55	0.00	2.587	0.60	0.81	2.2	97.8	0.0	-1.06	1.49	0.39	0.90	7.72	6618	429	6	0	0	0	3372	logfile
✔	8TVE	41639	2025-02-13	2023-08-18	3.9	4.16	3.79	4.1	0.013	1.52	0.0	0.09	9.81	0.01	2.020	3.65	0.33	2.2	97.8	0.0	0.30	0.76	0.82	3.62	4.1	0.007	0.99	3.0	0.05	14.23	0.00	2.556	5.21	2.88	3.3	96.5	0.2	1.64	0.63	0.79	0.85	2.47	9090	1227	6	0	6	0	0	logfile
✔	8KGE	37218	2025-02-11	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.003	0.71	0.0	0.05	16.87	0.00	2.383	8.16	7.25	8.5	91.3	0.2	-1.67	0.39	0.48	0.80	2.59	3584	486	2	0	0	0	0	logfile
✔	8Q8R	18258	2025-02-11	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.003	0.73	0.0	0.05	17.18	0.00	2.601	3.11	2.78	7.7	92.3	0.0	-1.59	1.64	0.44	0.88	5.86	3468	456	6	0	0	0	0	logfile
✔	8Q8F	18253	2025-02-11	2023-08-18	2.93	2.97	2.77	3.0	0.011	1.82	0.0	0.08	12.08	0.01	2.504	0.00	0.76	5.4	94.6	0.0	-1.60	0.37	0.78	6.53	3.0	0.003	0.67	0.0	0.05	17.02	0.00	2.536	3.82	1.52	2.7	97.3	0.0	-1.92	3.50	0.42	0.90	4.31	3468	456	6	0	0	0	0	logfile
✔	8Q8M	18255	2025-02-12	2023-08-18	2.95	3.13	2.89	3.1	0.011	1.96	7.0	0.12	11.82	0.01	2.510	0.00	0.00	7.4	92.6	0.0	-1.64	0.40	0.85	5.71	3.1	0.003	0.60	0.0	0.05	15.07	0.00	2.444	2.41	1.01	3.8	96.2	0.0	-1.70	1.10	0.41	0.87	5.90	7074	456	6	0	0	0	3606	logfile
✔	8Q7T	18233	2025-02-14	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	2.9	0.003	0.59	0.0	0.05	16.97	0.00	2.367	4.47	2.65	2.4	97.6	0.0	-1.83	1.95	0.33	0.82	4.65	10083	654	9	0	0	0	5136	logfile
✔	8Q7Y	18244	2025-02-14	2023-08-17	2.6	2.67	2.58	2.6	0.003	0.69	0.0	0.04	19.41	0.00	2.081	13.77	3.87	5.6	94.4	0.0	-1.10	0.64	0.77	3.25	2.6	0.006	0.79	0.0	0.05	18.88	0.01	2.533	10.20	5.75	8.3	91.7	0.0	-1.23	0.43	0.68	0.82	3.23	10032	1212	4	0	0	0	0	logfile
✔	8TVB	41636	2025-02-14	2023-08-17	2.9	3.12	2.93	3.2	0.010	1.21	0.0	0.07	10.85	0.01	2.017	1.55	0.00	1.2	98.6	0.2	-0.22	0.73	0.79	4.11	3.2	0.002	0.50	0.0	0.05	15.16	0.00	2.633	2.38	0.80	1.7	98.3	0.0	0.69	2.25	0.67	0.81	4.54	9687	1266	6	0	12	0	0	logfile
✔	8KFZ	37209	2025-02-13	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.004	0.67	0.0	0.04	16.16	0.00	2.500	12.65	4.76	3.1	96.9	0.0	0.62	0.34	0.72	0.73	1.65	8966	1139	5	0	0	0	0	logfile
✔	8Q7L	18219	2025-02-11	2023-08-16	2.82	2.80	2.86	2.9	0.011	1.90	4.0	0.11	11.68	0.01	2.159	2.03	0.00	4.4	95.6	0.0	-2.15	0.34	0.80	5.45	2.9	0.007	0.78	0.0	0.05	16.89	0.00	2.597	5.08	1.81	2.6	97.4	0.0	-2.43	0.82	0.39	0.91	4.95	3375	441	6	0	0	0	0	logfile
✔	8Q7M	18224	2025-02-11	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.004	0.70	0.0	0.05	15.15	0.00	2.532	2.88	2.05	1.8	98.2	0.0	-1.94	0.80	0.36	0.87	3.70	5109	669	9	0	0	0	0	logfile
✔	8Q7P	18228	2025-02-11	2023-08-16	3.28	3.24	3.20	3.3	0.011	1.82	0.0	0.09	11.62	0.01	2.479	0.00	0.00	1.4	98.6	0.0	-1.91	0.36	0.78	5.16	3.3	0.003	0.63	0.0	0.05	16.17	0.00	2.508	3.61	2.31	1.1	98.9	0.0	-2.37	1.41	0.42	0.86	5.09	3402	450	6	0	0	0	0	logfile
✔	8KFX	37207	2025-02-13	2023-08-16	2.96	2.23	3.09	2.0	0.004	0.61	0.0	0.04	16.55	0.00	2.189	11.28	0.51	2.5	97.5	0.0	0.90	0.79	0.79	2.90	2.0	0.003	0.58	0.0	0.04	17.01	0.00	2.515	7.87	3.95	2.6	97.4	0.0	1.06	1.09	0.79	0.80	2.61	9001	1139	6	0	1	0	0	logfile
✔	8Q7F	18215	2025-02-11	2023-08-16	3.72	2.86	3.58	3.2	0.011	1.88	2.0	0.10	12.87	0.01	2.492	0.00	0.00	1.1	98.9	0.0	-1.74	0.32	0.74	3.87	3.2	0.006	0.77	0.0	0.05	16.12	0.00	2.519	7.65	2.56	1.4	98.6	0.0	-1.90	0.86	0.39	0.81	4.15	3402	450	6	0	0	0	0	logfile
✔	8Q75	18204	2025-02-11	2023-08-15	3.2	4.13	3.25	3.8	0.006	1.56	0.0	0.05	14.77	0.01	1.828	20.97	0.62	12.3	86.1	1.6	-2.02	0.69	0.83	1.72	3.8	0.004	0.88	0.0	0.05	16.43	0.01	1.878	14.74	3.28	11.0	88.2	0.8	-1.17	0.66	0.69	0.84	1.34	5870	774	2	0	2	0	0	logfile
✔	8TU9	41620	2025-02-12	2023-08-15	3.26	3.58	3.38	3.6	0.011	1.68	0.0	0.08	14.55	0.02	2.023	2.59	0.00	4.4	95.6	0.0	-0.68	0.66	0.81	2.08	3.6	0.006	0.74	0.0	0.05	15.41	0.00	2.360	3.19	1.89	6.0	94.0	0.0	0.27	0.46	0.64	0.85	2.58	8390	1066	4	0	8	0	0	logfile
✔	8Q76	18205	2025-02-11	2023-08-15	3.29	4.20	3.31	3.8	0.005	0.85	0.0	0.05	14.28	0.01	1.945	17.61	0.16	12.2	87.3	0.5	-1.27	0.67	0.81	1.20	3.8	0.004	0.87	0.0	0.05	16.18	0.00	1.944	14.74	1.72	11.4	88.4	0.1	-0.56	1.03	0.67	0.83	1.17	5869	774	2	0	1	0	0	logfile
✔	8Q74	18203	2025-02-11	2023-08-15	3.68	4.60	3.68	4.2	0.004	1.02	0.0	0.05	14.01	0.01	1.633	20.98	0.15	15.9	83.2	0.9	-2.37	0.66	0.80	1.25	4.3	0.003	0.83	0.0	0.05	16.25	0.01	1.515	15.49	2.16	12.5	86.6	0.9	-1.34	1.04	0.66	0.80	0.62	5943	783	2	0	1	0	0	logfile
✔	8Q73	18202	2025-02-11	2023-08-15	3.58	5.00	3.87	4.6	0.004	0.92	0.0	0.05	14.50	0.01	2.243	12.12	0.00	12.6	86.4	1.0	-2.53	0.65	0.76	0.56	4.6	0.003	0.85	0.0	0.05	16.44	0.00	2.575	14.04	1.86	12.2	86.9	0.9	-1.65	1.07	0.65	0.80	0.68	5909	779	1	0	0	0	0	logfile

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