Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KF5	37199	2025-02-10	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.003	0.59	0.0	0.06	15.87	0.00	2.658	4.32	0.00	0.0	100.0	0.0	-0.04	0.92	0.38	0.88	8.22	1500	204	6	0	0	0	0	logfile
✔	8KF4	37198	2025-02-10	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.48	0.0	0.06	14.12	0.00	2.664	1.33	0.00	0.0	100.0	0.0	-1.06	1.19	0.38	0.91	7.82	1500	204	6	0	0	0	0	logfile
✔	8KF6	37200	2025-02-10	2023-08-15	3.7	3.70	3.32	3.9	0.004	0.70	0.0	0.06	14.13	0.00	2.415	19.14	0.00	17.2	82.8	0.0	-5.74	0.34	0.84	6.36	3.9	0.006	0.77	0.0	0.06	16.08	0.00	2.613	7.52	4.11	22.2	77.8	0.0	-3.84	0.94	0.34	0.85	6.53	2175	297	9	0	0	0	0	logfile
✔	8KF3	37197	2025-02-10	2023-08-15	3.5	2.69	2.86	3.1	0.008	0.86	0.0	0.06	13.98	0.00	2.379	5.47	0.00	9.3	90.7	0.0	-3.58	0.37	0.87	7.61	3.1	0.003	0.68	0.0	0.06	16.17	0.00	2.621	3.42	1.37	9.0	91.0	0.0	-2.30	0.34	0.40	0.87	6.86	2175	297	9	0	0	0	0	logfile
✔	8TTL	41610	2025-02-11	2023-08-14	2.6	2.56	2.61	2.8	0.013	2.14	8.0	0.13	13.17	0.01	2.584	0.00	1.35	7.1	92.0	0.9	-3.09	0.42	0.79	4.83	2.8	0.003	0.65	0.0	0.05	16.05	0.01	2.572	3.47	1.68	6.5	93.5	0.0	-2.42	1.50	0.37	0.88	5.69	5190	351	6	0	0	0	2607	logfile
✔	8TTG	41607	2025-02-10	2023-08-13	3.35	3.48	3.26	3.6	0.004	0.74	0.0	0.04	16.51	0.00	2.114	12.06	0.62	2.3	97.7	0.0	2.06	0.55	0.77	1.24	3.6	0.003	0.66	0.0	0.04	17.03	0.01	2.534	9.61	5.57	2.1	97.9	0.0	2.01	0.37	0.56	0.80	1.33	3026	389	2	0	0	0	0	logfile
✔	8TTE	41605	2025-02-10	2023-08-13	3.26	3.39	2.96	3.5	0.006	0.92	0.0	0.06	16.55	0.00	2.301	10.89	0.94	4.2	95.8	0.0	0.55	0.58	0.80	2.53	3.5	0.003	0.72	0.0	0.04	17.69	0.00	2.614	11.38	4.39	4.2	95.8	0.0	1.99	0.31	0.58	0.80	2.34	2991	385	2	0	0	0	0	logfile
✔	8KEW	37170	2025-02-10	2023-08-13	3.3	2.65	2.55	3.4	0.010	0.84	0.0	0.07	14.46	0.00	2.387	8.30	0.00	3.1	96.9	0.0	-3.87	0.36	0.85	5.24	3.4	0.003	0.61	0.0	0.06	16.68	0.00	2.589	3.98	0.00	2.1	97.9	0.0	-1.23	0.41	0.33	0.83	6.43	1500	204	6	0	0	0	0	logfile
✔	8TTF	41606	2025-02-11	2023-08-13	3.61	3.77	3.24	3.8	0.003	0.60	0.0	0.04	13.41	0.00	2.144	9.30	0.00	2.4	97.6	0.0	1.37	0.61	0.77	1.92	3.8	0.005	0.71	0.0	0.05	15.60	0.00	2.561	8.88	3.09	4.1	95.9	0.0	1.22	0.38	0.61	0.78	2.07	4763	621	3	0	0	0	0	logfile
✔	8TTH	41608	2025-02-11	2023-08-13	3.54	3.67	3.52	3.7	0.003	0.69	0.0	0.04	16.67	0.00	2.174	12.41	0.20	2.9	97.1	0.0	0.88	0.60	0.75	2.01	3.7	0.003	0.71	0.0	0.05	17.33	0.00	2.579	11.65	5.40	3.5	96.5	0.0	1.06	0.40	0.59	0.76	2.01	4620	603	3	0	0	0	0	logfile
✔	8KE9	37150	2025-02-11	2023-08-11	3.76	4.61	3.81	3.9	0.003	0.70	0.0	0.08	14.47	0.00	1.931	12.94	7.55	5.7	94.1	0.2	-1.09	0.74	0.78	0.99	3.9	0.004	0.72	0.0	0.04	14.40	0.00	2.499	16.25	2.76	6.6	93.2	0.2	-0.57	1.83	0.76	0.86	1.34	4929	654	3	0	0	0	0	logfile
✔	8TSQ	41598	2025-02-13	2023-08-11	3.6	3.91	3.59	3.9	0.004	0.65	0.0	0.04	16.89	0.00	2.234	10.06	0.51	4.3	95.7	0.0	1.04	0.67	0.72	0.85	3.9	0.003	0.62	0.0	0.04	17.20	0.00	2.500	8.07	2.97	3.8	96.2	0.0	1.39	1.14	0.69	0.77	0.35	8918	1150	2	0	0	0	0	logfile
✔	8TSS	41600	2025-02-13	2023-08-11	3.7	4.10	3.81	4.1	0.004	0.75	0.0	0.04	15.89	0.01	2.244	11.94	0.41	4.5	95.5	0.1	0.31	0.67	0.72	0.82	4.1	0.003	0.65	0.0	0.04	16.63	0.00	2.566	8.90	4.81	3.9	96.1	0.0	1.23	1.59	0.66	0.74	0.96	8918	1150	2	0	0	0	0	logfile
✔	8KEK	37161	2025-02-12	2023-08-11	3.54	2.63	3.55	2.1	0.002	0.49	0.0	0.04	9.41	0.00	2.238	9.46	6.01	10.9	89.0	0.1	-5.10	0.60	0.57	1.53	2.1	0.003	0.76	0.0	0.05	13.27	0.00	2.509	12.95	3.24	14.4	85.5	0.1	-2.96	2.50	0.61	0.59	1.75	7721	994	3	0	0	0	0	logfile
✔	8KEJ	37160	2025-02-12	2023-08-11	3.73	2.84	3.69	2.1	0.003	0.65	0.0	0.04	9.63	0.00	2.252	7.21	5.75	7.7	92.1	0.2	-4.21	0.63	0.56	1.45	2.2	0.003	0.72	0.0	0.05	13.89	0.00	2.595	11.52	3.83	7.7	92.3	0.0	-2.50	0.80	0.65	0.60	1.09	8377	1075	3	0	0	0	0	logfile
✔	8TSP	41597	2025-02-13	2023-08-11	3.9	4.19	3.93	4.2	0.004	0.75	0.0	0.05	16.52	0.01	2.201	10.09	0.72	3.0	97.0	0.0	0.50	0.68	0.74	0.50	4.2	0.003	0.65	0.0	0.04	17.39	0.00	2.582	7.71	3.89	3.0	97.0	0.0	1.86	0.58	0.68	0.74	0.50	8888	1146	2	0	0	0	0	logfile
✔	8TSR	41599	2025-02-13	2023-08-11	3.9	4.25	3.96	4.2	0.005	0.83	0.0	0.05	16.02	0.01	2.219	11.20	0.51	3.2	96.8	0.0	0.80	0.71	0.76	0.88	4.2	0.003	0.75	0.0	0.04	17.08	0.00	2.554	9.98	4.30	3.4	96.6	0.0	1.80	1.20	0.70	0.76	0.70	8888	1146	2	0	0	0	0	logfile
✔	8KEi	37159	2025-02-14	2023-08-11	3.56	4.04	3.68	3.9	0.004	0.73	0.0	0.05	18.45	0.00	2.150	9.02	0.46	6.0	94.0	0.0	-0.29	0.69	0.83	1.56	3.9	0.003	0.67	0.0	0.04	17.55	0.00	2.415	6.37	5.09	5.7	94.3	0.0	-0.19	0.30	0.68	0.82	1.46	10209	1272	9	0	11	0	0	logfile
✔	8KDT	37145	2025-02-11	2023-08-10	3.04	2.47	3.21	2.2	0.002	0.51	0.0	0.04	8.53	0.00	2.240	7.77	5.91	6.6	93.4	0.0	-4.43	0.67	0.70	1.97	2.2	0.004	0.82	0.0	0.05	14.06	0.00	2.531	12.71	5.55	11.6	88.4	0.0	-2.30	1.47	0.69	0.75	2.21	4837	625	3	0	0	0	0	logfile
✔	8KDR	37143	2025-02-11	2023-08-10	3.4	2.45	3.47	2.1	0.010	1.49	8.0	0.10	18.68	0.01	2.287	10.31	26.92	17.1	79.9	3.0	-5.71	0.59	0.61	1.58	3.3	0.004	0.90	0.0	0.05	15.99	0.01	2.522	14.77	6.85	12.0	87.7	0.3	-3.49	1.49	0.63	0.70	2.17	5454	706	3	0	0	0	0	logfile

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